Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 3.1e-181 638.3 310 100.0
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 5.7e-175 617.5 310 96.5
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 6.0e-156 554.3 308 86.7
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 2.4e-141 505.8 295 81.4
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 3.2e-141 505.4 295 81.0
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 1.6e-140 503.1 298 80.5
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 2.7e-140 502.3 295 80.3
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 3.0e-139 498.8 297 78.8
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 2.5e-138 495.7 306 76.1
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 3.3e-138 495.4 285 80.7
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 5.6e-138 494.6 299 78.9
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 7.3e-138 494.2 294 78.2
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 9.6e-138 493.8 306 75.5
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 9.6e-138 493.8 304 77.0
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 2.8e-137 492.3 300 77.7
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 2.8e-137 492.3 294 79.3
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 2.8e-137 492.3 306 75.8
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 4.7e-137 491.5 296 78.7
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 2.4e-136 489.2 297 78.1
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 5.2e-136 488.0 308 76.3
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 8.9e-136 487.3 297 79.1
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 5.8e-135 484.6 293 78.2
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 5.8e-135 484.6 299 78.9
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 2.9e-134 482.3 279 79.6
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 3.8e-134 481.9 295 78.0
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 3.8e-134 481.9 277 80.5
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 4.9e-134 481.5 294 76.9
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 6.4e-134 481.1 293 77.1
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 8.4e-134 480.7 298 75.8
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 1.4e-133 479.9 298 75.8
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 1.9e-133 479.6 293 77.5
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 2.4e-133 479.2 285 78.2
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 4.2e-133 478.4 298 75.5
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 4.2e-133 478.4 298 75.5
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 5.4e-133 478.0 294 78.2
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 9.3e-133 477.2 294 75.9
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 2.1e-132 476.1 298 75.5
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 2.7e-132 475.7 296 76.7
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 4.6e-132 474.9 295 76.3
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 4.6e-132 474.9 296 76.4
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 7.8e-132 474.2 298 75.8
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 7.8e-132 474.2 296 75.3
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 2.3e-131 472.6 303 74.6
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 2.3e-131 472.6 299 75.6
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 1.1e-130 470.3 296 74.3
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 1.5e-130 469.9 302 76.5
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 5.6e-130 468.0 306 72.9
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 5.6e-130 468.0 295 74.9
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 7.3e-130 467.6 294 76.2
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 1.6e-129 466.5 298 75.2
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 3.6e-129 465.3 295 74.9
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 1.1e-128 463.8 293 74.7
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 1.4e-128 463.4 296 74.3
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 2.4e-128 462.6 319 70.5
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 4.0e-128 461.8 303 72.9
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 6.9e-128 461.1 297 74.4
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 6.9e-128 461.1 300 73.0
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 2.0e-127 459.5 289 76.5
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 2.6e-127 459.1 296 73.0
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 2.6e-127 459.1 295 74.2
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 4.5e-127 458.4 310 73.2
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 3.8e-126 455.3 297 73.7
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 3.8e-126 455.3 296 72.6
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 3.8e-126 455.3 259 80.3
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 4.9e-126 454.9 295 71.2
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 2.4e-125 452.6 291 73.2
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 3.2e-125 452.2 297 71.4
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 3.2e-125 452.2 273 78.0
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 7.1e-125 451.1 312 71.5
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 1.6e-124 449.9 296 72.6
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 2.7e-124 449.1 299 71.2
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 1.3e-123 446.8 280 76.1
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 2.3e-123 446.0 294 69.7
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 3.0e-123 445.7 294 68.7
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 3.9e-123 445.3 295 72.5
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 8.7e-123 444.1 295 70.2
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 3.3e-122 442.2 291 71.8
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 5.6e-122 441.4 303 70.0
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 7.4e-122 441.0 399 57.9
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 1.6e-121 439.9 295 68.5
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 1.6e-121 439.9 295 69.5
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 2.8e-121 439.1 296 68.9
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 3.7e-121 438.7 283 74.2
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 4.0e-120 435.3 310 67.7
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 9.0e-120 434.1 297 68.4
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 3.4e-119 432.2 306 70.9
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 3.5e-116 422.2 287 69.7
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 1.3e-115 420.2 297 70.0
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 5.6e-114 414.8 259 75.3
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 2.1e-113 412.9 278 71.6
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 5.3e-112 408.3 297 68.7
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 5.3e-112 408.3 297 68.7
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 1.2e-111 407.1 275 68.0
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 7.6e-111 404.4 316 63.6
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 1.0e-110 404.1 245 78.4
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 6.5e-110 401.4 295 67.5
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 1.6e-108 396.7 248 75.4
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 1.0e-102 377.5 277 66.8
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 8.5e-102 374.4 211 82.9
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 7.9e-100 367.9 249 70.7
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 2.8e-97 359.4 265 61.9
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 2.8e-97 359.4 210 80.0
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 8.5e-94 347.8 277 62.8
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 2.3e-91 339.7 242 69.4
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 4.8e-89 332.0 247 64.8
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 6.3e-89 331.6 201 76.1
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 1.4e-88 330.5 201 74.6
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 2.3e-83 313.2 299 61.2
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 4.8e-73 278.9 299 51.5
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 2.1e-68 263.5 280 46.8
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 8.0e-68 261.5 193 67.9
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 4.0e-67 259.2 262 49.2
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 1.4e-64 250.8 269 52.0
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 2.3e-54 216.9 262 44.7
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 1.5e-53 214.2 126 76.2
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 2.5e-53 213.4 172 63.4
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 2.9e-49 199.9 144 69.4
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 6.0e-39 165.6 96 80.2
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 6.2e-36 155.6 162 53.1
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 1.2e-34 151.4 98 75.5
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 2.3e-30 137.1 102 63.7
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 8.6e-30 135.2 80 73.8
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 1.2e-28 131.3 68 82.4
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 7.1e-16 89.0 91 51.6
MELO3C000773.2 Cucumis melo HOM05D006150 ORTHO05D007745 6.6e-14 82.4 41 97.6
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 7.3e-13 79.0 56 66.1
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 2.6e-10 70.5 57 61.4
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 4.2e-08 63.2 33 81.8
Cpa.g.sc3814.1 Carica papaya HOM05D006150 ORTHO05D007745 2.1e-07 60.8 36 75.0
Lsat_1_v5_gn_2_23540 Lactuca sativa HOM05D002379 ORTHO05D003469 2.3e-06 57.4 91 39.6
Lsat_1_v5_gn_8_14120 Lactuca sativa HOM05D002379 ORTHO05D021531 2.3e-06 57.4 91 39.6
Lsat_1_v5_gn_9_81181 Lactuca sativa HOM05D002379 ORTHO05D003469 2.3e-06 57.4 91 39.6


User provided reference genes

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