Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G004660 Cucumis sativus L. HOM05D004357 ORTHO05D005064 3.7e-81 305.1 184 100.0
MELO3C014164.2 Cucumis melo HOM05D004357 ORTHO05D005064 1.2e-50 203.8 127 83.5
ClCG10G005000 Citrullus lanatus HOM05D004357 ORTHO05D005064 8.4e-41 171.0 125 75.2
Sed0014123 Sechium edule HOM05D004357 ORTHO05D005064 5.9e-26 121.7 122 56.6
Sabra16G0234300 Salix brachista HOM05D004357 ORTHO05D005064 3.9e-22 109.0 125 48.0
Sabra16G0234600 Salix brachista HOM05D004357 ORTHO05D005064 3.9e-22 109.0 125 48.0
QL08p009100 Quercus lobata HOM05D004357 ORTHO05D005064 5.7e-21 105.1 131 46.6
Potri.001G356600 Populus trichocarpa HOM05D004357 ORTHO05D005064 1.7e-20 103.6 126 44.4
Potri.011G080800 Populus trichocarpa HOM05D004357 ORTHO05D005064 4.8e-20 102.1 133 45.9
MD11G1213000 Malus domestica HOM05D004357 ORTHO05D005064 3.1e-19 99.4 131 51.1
Phvul.006G047200 Phaseolus vulgaris HOM05D004357 ORTHO05D005064 4.1e-19 99.0 129 45.0
FAN21G0700 Fragaria x ananassa HOM05D004357 ORTHO05D005064 1.2e-18 97.4 128 49.2
FAN25G0038 Fragaria x ananassa HOM05D004357 ORTHO05D005064 1.2e-18 97.4 128 49.2
FAN25G2170 Fragaria x ananassa HOM05D004357 ORTHO05D005064 3.4e-18 95.9 128 48.4
FvH4_3g23190 Fragaria vesca HOM05D004357 ORTHO05D005064 7.7e-18 94.7 128 49.2
FAN11G2993 Fragaria x ananassa HOM05D004357 ORTHO05D005064 7.7e-18 94.7 128 49.2
FAN16G2316 Fragaria x ananassa HOM05D004357 ORTHO05D005064 7.7e-18 94.7 128 47.7
Eucgr.F00736 Eucalyptus grandis HOM05D004357 ORTHO05D005064 2.2e-17 93.2 121 45.5
Ca_03254_v3 Cicer arietinum L. HOM05D004357 ORTHO05D005064 2.9e-17 92.8 123 43.9
VMungo0540G0503 Vigna mungo HOM05D004357 ORTHO05D005064 2.9e-17 92.8 126 48.4
RcHm_v2.0_Chr5g0040831 Rosa chinensis HOM05D004357 ORTHO05D005064 6.5e-17 91.7 128 46.9
Glyma.18G092400 Glycine max HOM05D004357 ORTHO05D005064 1.4e-16 90.5 121 44.6
HanXRQChr13g0408531 Helianthus annuus HOM05D004357 ORTHO05D005064 1.4e-16 90.5 64 59.4
Dinv40782 Davidia involucrata HOM05D001348 ORTHO05D008393 1.9e-16 90.1 129 44.2
Manes.03G133800 Manihot esculenta HOM05D004357 ORTHO05D005064 1.9e-16 90.1 125 41.6
Medtr4g044463 Medicago truncatula HOM05D004357 ORTHO05D005064 1.9e-16 90.1 122 44.3
HanXRQChr17g0546371 Helianthus annuus HOM05D004357 ORTHO05D005064 2.5e-16 89.7 124 44.4
Nitab4.5_0004983g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 2.5e-16 89.7 121 42.1
Duzib170G0654 Durio zibethinus HOM05D004357 ORTHO05D005064 3.2e-16 89.4 130 42.3
Glyma.08G320000 Glycine max HOM05D004357 ORTHO05D005064 3.2e-16 89.4 121 43.8
HanXRQChr03g0076711 Helianthus annuus HOM05D004357 ORTHO05D005064 3.2e-16 89.4 64 60.9
Manes.15G068600 Manihot esculenta HOM05D004357 ORTHO05D005064 3.2e-16 89.4 130 40.8
Lsat_1_v5_gn_9_92180 Lactuca sativa HOM05D004357 ORTHO05D005064 5.5e-16 88.6 64 60.9
CiPaw.12G131900 Carya illinoinensis HOM05D004357 ORTHO05D005064 9.4e-16 87.8 129 43.4
Ciclev10010614m.g Citrus clementina HOM05D004357 ORTHO05D005064 9.4e-16 87.8 126 44.4
Sc16g0005860 Simmondsia chinensis HOM05D004357 ORTHO05D005064 2.1e-15 86.7 137 41.6
TWI39G1080 Tripterygium wilfordii HOM05D004357 ORTHO05D005064 2.1e-15 86.7 133 44.4
DCAR_016717 Daucus carota HOM05D004357 ORTHO05D005064 2.7e-15 86.3 128 42.2
Lsat_1_v5_gn_7_114381 Lactuca sativa HOM05D004357 ORTHO05D005064 2.7e-15 86.3 125 41.6
CANSAT11G1041 Cannabis sativa HOM05D004357 ORTHO05D005064 3.6e-15 85.9 125 40.8
Gohir.A01G082600 Gossypium hirsutum HOM05D004357 ORTHO05D005064 3.6e-15 85.9 124 40.3
Gorai.002G091500 Gossypium raimondii HOM05D004357 ORTHO05D005064 4.7e-15 85.5 128 41.4
Lj8C171T1 Lonicera japonica HOM05D004357 ORTHO05D005064 4.7e-15 85.5 71 56.3
HanXRQChr11g0334081 Helianthus annuus HOM05D004357 ORTHO05D005064 6.1e-15 85.1 75 54.7
Lalb_Chr20g0115381 Lupinus albus HOM05D004357 ORTHO05D005064 6.1e-15 85.1 122 43.4
Oeu039200.1 Olea europaea HOM05D004357 ORTHO05D005064 6.1e-15 85.1 112 42.9
Sc07g0002830 Simmondsia chinensis HOM05D004357 ORTHO05D005064 6.1e-15 85.1 128 42.2
Nitab4.5_0012195g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 7.9e-15 84.7 120 40.8
Psat5g173760 Pisum sativum HOM05D004357 ORTHO05D005064 7.9e-15 84.7 121 42.1
TPR.G14428 Trifolium pratense HOM05D004357 ORTHO05D005064 7.9e-15 84.7 120 42.5
Medtr3g053240 Medicago truncatula HOM05D004357 ORTHO05D005064 1.8e-14 83.6 126 40.5
Lsat_1_v5_gn_2_77680 Lactuca sativa HOM05D004357 ORTHO05D005064 2.3e-14 83.2 126 42.1
Gohir.D01G069200 Gossypium hirsutum HOM05D004357 ORTHO05D005064 3.9e-14 82.4 124 41.1
Solyc05g050730.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 3.9e-14 82.4 64 59.4
DCAR_022585 Daucus carota HOM05D004357 ORTHO05D005064 5.1e-14 82.0 123 39.8
Lsat_1_v5_gn_3_15001 Lactuca sativa HOM05D004357 ORTHO05D005064 6.7e-14 81.6 62 58.1
AUR62015821 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.1e-13 80.9 73 52.1
Lsat_1_v5_gn_7_114360 Lactuca sativa HOM05D004357 ORTHO05D005064 1.1e-13 80.9 63 60.3
Nitab4.5_0002598g0090 Nicotiana tabacum HOM05D004357 ORTHO05D005064 1.5e-13 80.5 66 54.5
PGSC0003DMG402027015 Solanum tuberosum HOM05D004357 ORTHO05D005064 1.5e-13 80.5 63 57.1
Thecc.07G032000 Theobroma cacao HOM05D004357 ORTHO05D005064 1.5e-13 80.5 129 39.5
TAR627G1104 Trochodendron aralioides HOM05D004357 ORTHO05D005064 1.5e-13 80.5 64 57.8
TAR629G2714 Trochodendron aralioides HOM05D004357 ORTHO05D005064 1.5e-13 80.5 124 39.5
Actinidia35360 Actinidia chinensis HOM05D004357 ORTHO05D005064 2.0e-13 80.1 125 37.6
MD03G1197000 Malus domestica HOM05D004357 ORTHO05D005064 2.0e-13 80.1 118 46.6
PGSC0003DMG400007032 Solanum tuberosum HOM05D004357 ORTHO05D005064 2.0e-13 80.1 64 59.4
Sopen06g029590 Solanum pennellii HOM05D007023 ORTHO05D008684 2.6e-13 79.7 127 37.0
ECA236G2715 Erigeron canadensis HOM05D004357 ORTHO05D005064 3.3e-13 79.3 78 52.6
Duzib213G0508 Durio zibethinus HOM05D004357 ORTHO05D005064 4.4e-13 79.0 124 37.9
Oeu028003.1 Olea europaea HOM05D004357 ORTHO05D005064 4.4e-13 79.0 64 54.7
Sopen05g029140 Solanum pennellii HOM05D004357 ORTHO05D005064 7.4e-13 78.2 129 40.3
CAN.G112.17 Capsicum annuum HOM05D004357 ORTHO05D005064 9.7e-13 77.8 135 40.0
AUR62020395 Chenopodium quinoa HOM05D004357 ORTHO05D005064 9.7e-13 77.8 71 49.3
PSO135G0247 Papaver somniferum HOM05D004357 ORTHO05D005064 9.7e-13 77.8 79 51.9
SalBow1G5576 Salvia bowleyana HOM05D004357 ORTHO05D005064 9.7e-13 77.8 63 55.6
Cpa.g.sc12.272 Carica papaya HOM05D004357 ORTHO05D005064 1.3e-12 77.4 68 54.4
Solyc06g073220.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 1.3e-12 77.4 127 35.4
Atru.chr2.3491 Acer truncatum HOM05D004357 ORTHO05D005064 2.8e-12 76.3 66 56.1
AUR62015823 Chenopodium quinoa HOM05D004357 ORTHO05D005064 2.8e-12 76.3 131 40.5
ECA236G1539 Erigeron canadensis HOM05D004357 ORTHO05D005064 4.8e-12 75.5 123 42.3
Cc05_g14030 Coffea canephora HOM05D004357 ORTHO05D005064 1.4e-11 73.9 124 39.5
Ah.06g182580 Amaranthus hybridus HOM05D004357 ORTHO05D005064 1.8e-11 73.6 130 36.9
PSO541G1695 Papaver somniferum HOM05D004357 ORTHO05D005064 1.8e-11 73.6 132 36.4
PSO541G4299 Papaver somniferum HOM05D004357 ORTHO05D005064 1.8e-11 73.6 134 35.8
Peaxi162Scf00126g00115 Petunia axillaris HOM05D004357 ORTHO05D005064 1.8e-11 73.6 115 45.2
AUR62020397 Chenopodium quinoa HOM05D004357 ORTHO05D005064 5.3e-11 72.0 131 35.9
Thhalv10027097m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 5.3e-11 72.0 86 45.3
THA.LOC104798766 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 1.2e-10 70.9 132 36.4
AUR62020398 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.6e-10 70.5 129 41.1
Prupe.4G218300 Prunus persica HOM05D004357 ORTHO05D005064 1.6e-10 70.5 134 37.3
Sp7g24830 Schrenkiella parvula HOM05D004357 ORTHO05D005064 2.0e-10 70.1 66 50.0
AUR62015824 Chenopodium quinoa HOM05D004357 ORTHO05D005064 3.5e-10 69.3 130 32.3
BraA01t01764Z Brassica rapa HOM05D004357 ORTHO05D005064 4.5e-10 68.9 131 35.1
TPR.G14421 Trifolium pratense HOM05D004357 ORTHO05D005064 4.5e-10 68.9 113 36.3
THA.LOC104811623 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 5.9e-10 68.6 125 37.6
AUR62020394 Chenopodium quinoa HOM05D004357 ORTHO05D005064 7.7e-10 68.2 130 33.1
Haze_09713 Corylus avellana HOM05D004357 ORTHO05D005064 1.0e-09 67.8 127 38.6
PGR083G1129 Punica granatum HOM05D004357 ORTHO05D005064 1.0e-09 67.8 129 41.1
THA.LOC104817674 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 1.0e-09 67.8 126 38.1
Lj6g0011908 Lotus japonicus HOM05D004357 ORTHO05D005064 1.3e-09 67.4 132 38.6
Carub.0008s1540 Capsella rubella HOM05D004357 ORTHO05D005064 2.2e-09 66.6 75 41.3
CARHR268450 Cardamine hirsuta HOM05D004357 ORTHO05D005064 2.9e-09 66.2 81 40.7
Thhalv10014856m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 2.9e-09 66.2 75 41.3
Lj6g0017870 Lotus japonicus HOM05D004357 ORTHO05D005064 2.9e-09 66.2 133 38.3
A06p02900 Brassica napus HOM05D004357 ORTHO05D005064 3.8e-09 65.9 77 40.3
C01p23050 Brassica napus HOM05D004357 ORTHO05D005064 3.8e-09 65.9 86 40.7
BolC1t02239H Brassica oleracea HOM05D004357 ORTHO05D005064 3.8e-09 65.9 86 40.7
Nitab4.5_0011467g0070 Nicotiana tabacum HOM05D004357 ORTHO05D005064 3.8e-09 65.9 128 37.5
BcaC03g14266 Brassica carinata HOM05D004357 ORTHO05D005064 5.0e-09 65.5 75 41.3
Aa31LG5G12090 Aethionema arabicum HOM05D002991 ORTHO05D003480 6.5e-09 65.1 101 39.6
BcaC04g20269 Brassica carinata HOM05D004357 ORTHO05D005064 6.5e-09 65.1 75 41.3
BolC9t57436H Brassica oleracea HOM05D004357 ORTHO05D005064 6.5e-09 65.1 75 41.3
Carub.0007s1397 Capsella rubella HOM05D004357 ORTHO05D005064 6.5e-09 65.1 131 34.4
BcaB07g33511 Brassica carinata HOM05D004357 ORTHO05D005064 8.5e-09 64.7 131 35.9
C02p16430 Brassica napus HOM05D002089 ORTHO05D005064 8.5e-09 64.7 75 41.3
BolC2t07743H Brassica oleracea HOM05D002089 ORTHO05D005064 8.5e-09 64.7 75 41.3
COL.COLO4_09694 Corchorus olitorius HOM05D004357 ORTHO05D005064 1.1e-08 64.3 84 44.0
C09p45880 Brassica napus HOM05D004357 ORTHO05D005064 1.5e-08 63.9 128 35.2
Sp6g17040 Schrenkiella parvula HOM05D004357 ORTHO05D005064 1.5e-08 63.9 75 41.3
BcaB05g22181 Brassica carinata HOM05D004357 ORTHO05D005064 1.9e-08 63.5 75 40.0
BcaC08g43251 Brassica carinata HOM05D004357 ORTHO05D005064 1.9e-08 63.5 77 39.0
C06p05970 Brassica napus HOM05D004357 ORTHO05D005064 1.9e-08 63.5 77 39.0
BolC6t35710H Brassica oleracea HOM05D004357 ORTHO05D005064 1.9e-08 63.5 77 39.0
Migut.K00212 Erythranthe guttata HOM05D004357 ORTHO05D005064 1.9e-08 63.5 126 32.5
Sp1g37560 Schrenkiella parvula HOM05D004357 ORTHO05D005064 1.9e-08 63.5 65 47.7
AT4G26880 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 2.5e-08 63.2 128 32.8
Aa31LG3G11030 Aethionema arabicum HOM05D004357 ORTHO05D005064 3.2e-08 62.8 90 34.4
A03p14230 Brassica napus HOM05D004357 ORTHO05D005064 3.2e-08 62.8 73 41.1
BraA03t10721Z Brassica rapa HOM05D000020 ORTHO05D002694 3.2e-08 62.8 73 41.1
A02p09880 Brassica napus HOM05D002089 ORTHO05D002848 4.2e-08 62.4 75 40.0
A10p12380 Brassica napus HOM05D004357 ORTHO05D005064 4.2e-08 62.4 123 32.5
BraA02t06052Z Brassica rapa HOM05D002089 ORTHO05D002848 4.2e-08 62.4 75 40.0
BraA06t23496Z Brassica rapa HOM05D004357 ORTHO05D005064 4.2e-08 62.4 78 43.6
BraA10t43333Z Brassica rapa HOM05D004357 ORTHO05D005064 4.2e-08 62.4 123 32.5
Aqoxy1G03059 Aquilegia oxysepala HOM05D004357 ORTHO05D005064 5.5e-08 62.0 129 38.8
AT1G50720 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 5.5e-08 62.0 124 33.1
SGA_v2.0_scaffold12G06084 Striga asiatica HOM05D004357 ORTHO05D005064 5.5e-08 62.0 121 34.7
arahy.Tifrunner.gnm1.ann1.DG0M13 Arachis hypogaea HOM05D002014 ORTHO05D001958 7.2e-08 61.6 63 47.6
CARHR234490 Cardamine hirsuta HOM05D004357 ORTHO05D005064 7.2e-08 61.6 128 34.4
A01p18090 Brassica napus HOM05D004357 ORTHO05D005064 1.2e-07 60.8 67 41.8
Thecc.06G225200 Theobroma cacao HOM05D002014 ORTHO05D001958 1.2e-07 60.8 78 43.6
AT5G55110 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 1.6e-07 60.5 75 40.0
Duzib235G1176 Durio zibethinus HOM05D002014 ORTHO05D001958 2.1e-07 60.1 126 36.5
BcaC01g06348 Brassica carinata HOM05D004357 ORTHO05D005064 3.6e-07 59.3 125 33.6
A03p14260 Brassica napus HOM05D004357 ORTHO05D005064 3.6e-07 59.3 71 40.8
BraA03t10723Z Brassica rapa HOM05D004357 ORTHO05D005064 3.6e-07 59.3 71 40.8
FvH4_7g17590 Fragaria vesca HOM05D002014 ORTHO05D001958 3.6e-07 59.3 65 46.2
FAN03G3151 Fragaria x ananassa HOM05D002014 ORTHO05D001958 3.6e-07 59.3 65 46.2
FAN06G0196 Fragaria x ananassa HOM05D002014 ORTHO05D001958 3.6e-07 59.3 65 46.2
FAN06G4303 Fragaria x ananassa HOM05D002014 ORTHO05D001958 3.6e-07 59.3 65 46.2
FAN10G4021 Fragaria x ananassa HOM05D002014 ORTHO05D001958 3.6e-07 59.3 65 46.2
Nitab4.5_0011467g0030 Nicotiana tabacum HOM05D004357 ORTHO05D005064 4.7e-07 58.9 135 32.6
Duzib235G0981 Durio zibethinus HOM05D002014 ORTHO05D001958 8.0e-07 58.2 126 37.3
AL8G30610 Arabidopsis lyrata HOM05D004357 ORTHO05D005064 1.0e-06 57.8 129 31.0
arahy.Tifrunner.gnm1.ann1.DPYD9S Arachis hypogaea HOM05D002014 ORTHO05D001958 1.0e-06 57.8 76 43.4
BcaB08g35875 Brassica carinata HOM05D004357 ORTHO05D005064 1.4e-06 57.4 123 35.8
TWI38G0617 Tripterygium wilfordii HOM05D002014 ORTHO05D001958 1.4e-06 57.4 62 43.5
BcaNung03559 Brassica carinata HOM05D004357 ORTHO05D005064 1.8e-06 57.0 128 31.2
FAN25G1699 Fragaria x ananassa HOM05D002014 ORTHO05D001958 1.8e-06 57.0 63 46.0
COL.COLO4_31810 Corchorus olitorius HOM05D002014 ORTHO05D001958 2.3e-06 56.6 58 50.0
QL05p072432 Quercus lobata HOM05D002014 ORTHO05D001958 3.0e-06 56.2 63 44.4
QL05p072457 Quercus lobata HOM05D002014 ORTHO05D001958 3.0e-06 56.2 63 44.4
QL12p029974 Quercus lobata HOM05D002014 ORTHO05D001958 3.0e-06 56.2 63 44.4
Haze_06838 Corylus avellana HOM05D002014 ORTHO05D001958 4.0e-06 55.8 68 41.2
Peaxi162Scf01626g00015 Petunia axillaris HOM05D004357 ORTHO05D005064 4.0e-06 55.8 98 40.8
Thhalv10012189m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 5.2e-06 55.5 129 31.0
Lj6C73T0 Lonicera japonica HOM05D002014 ORTHO05D001958 5.2e-06 55.5 108 35.2
CARHR040820 Cardamine hirsuta HOM05D004357 ORTHO05D005064 6.7e-06 55.1 129 31.0
Duzib235G0137 Durio zibethinus HOM05D002014 ORTHO05D001958 6.7e-06 55.1 125 34.4
FAN01G2575 Fragaria x ananassa HOM05D002014 ORTHO05D001958 6.7e-06 55.1 65 44.6
Gohir.A05G172300 Gossypium hirsutum HOM05D002014 ORTHO05D001958 6.7e-06 55.1 61 42.6
BolC3t14083H Brassica oleracea HOM05D004357 ORTHO05D005064 8.8e-06 54.7 125 32.8
Nn1g03453 Nelumbo nucifera HOM05D004357 ORTHO05D005064 8.8e-06 54.7 142 33.1


User provided reference genes

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