Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 3556.1 1799 100.0
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 3372.0 1799 94.5
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 3283.8 1813 92.1
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 3173.3 1804 89.1
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 2727.6 1818 75.7
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 2720.7 1813 75.1
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2712.6 1818 75.2
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 2699.5 1819 74.8
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2697.2 1820 74.2
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 2695.2 1822 74.9
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2693.7 1819 74.8
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2686.0 1818 74.5
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2683.7 1819 74.1
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2682.5 1820 74.2
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2681.7 1820 74.2
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 2671.7 1824 73.9
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 2670.6 1818 74.1
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2669.4 1820 74.0
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 2661.7 1804 74.3
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 2657.9 1818 73.4
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 2655.6 1818 74.0
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 2655.6 1818 73.4
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 2645.9 1815 73.3
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 2638.6 1820 73.3
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 2632.8 1765 75.3
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 2622.0 1831 72.0
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 2620.5 1818 72.0
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 2618.6 1832 72.4
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2615.5 1818 71.9
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2607.0 1774 75.1
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2600.5 1804 73.1
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2600.1 1820 71.4
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 2595.8 1818 71.2
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 2595.8 1814 71.4
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2594.3 1819 71.7
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 2593.5 1821 71.7
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2592.0 1818 71.7
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2587.0 1818 71.6
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2583.9 1817 70.8
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 2581.2 1924 68.9
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 2578.5 1760 73.7
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2575.8 1856 71.8
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2567.3 1895 68.3
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 2562.3 1973 66.8
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 2561.9 1818 70.5
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 2560.4 1815 70.4
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 2550.8 1819 71.9
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2529.2 1816 70.2
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 2528.8 1818 70.3
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 2526.9 1817 70.0
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 2524.2 1817 70.0
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 2519.2 1816 70.4
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 2509.2 1813 70.1
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 2506.9 1819 69.9
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2506.9 1812 70.1
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2506.9 1817 69.2
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 2505.7 1816 69.9
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 2504.6 1819 70.0
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2502.2 1816 69.8
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2500.7 1812 70.0
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 2499.5 1760 71.2
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 2489.9 1817 69.0
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 2489.5 1818 69.6
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 2487.6 1827 69.5
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 2484.1 1818 68.5
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 2477.6 1814 69.0
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2476.8 1818 69.0
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 2475.3 1816 68.9
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 2473.7 1820 69.2
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 2467.2 1812 68.5
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2457.9 1675 74.3
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 2455.2 1817 68.1
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2433.7 1814 67.8
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2431.4 1818 67.8
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 2428.3 1817 67.4
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2424.4 1831 67.3
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 2422.9 1893 66.1
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2419.0 1803 68.1
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 2416.7 1808 67.8
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2412.5 1812 67.4
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2393.2 1847 66.2
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2387.5 1950 64.2
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2370.9 1856 66.0
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 2349.3 1835 66.1
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 2345.1 1790 66.3
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 2336.6 1816 66.1
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2331.6 1905 65.0
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2326.2 1827 64.8
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 2304.2 1834 64.3
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 0.0e+00 2297.3 1813 64.6
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 0.0e+00 2276.5 1626 71.2
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 2251.9 1823 62.0
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 2243.0 1820 62.4
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2221.4 1561 73.2
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2186.0 1652 68.0
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2157.5 1679 66.3
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 2109.7 1517 69.8
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2093.9 1440 71.5
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 0.0e+00 2077.0 1740 63.7
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 2059.6 1815 58.3
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1756.9 1253 71.7
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 0.0e+00 1742.6 1442 62.6
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1714.9 1147 73.9
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 0.0e+00 1637.5 1812 50.6
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1398.3 1933 41.1
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 0.0e+00 1388.6 1848 42.3
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1385.9 1852 42.2
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 0.0e+00 1379.8 945 72.0
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1292.3 1877 39.5
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1219.5 1821 38.9
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1209.5 1849 38.9
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1174.8 1823 38.0
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1121.7 863 67.2
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 3.2e-302 1042.7 1834 36.0
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 8.5e-295 1018.1 721 69.9
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 1.1e-286 991.1 954 57.1
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 5.3e-273 945.7 1951 33.0
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 2.0e-248 864.0 689 62.0
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 7.0e-241 839.0 1158 46.0
Potri.011G167650 Populus trichocarpa HOM05D004535 ORTHO05D005341 5.1e-199 699.9 502 70.7
Actinidia00829 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.2e-165 588.2 631 55.2
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 2.8e-141 508.1 630 49.5
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 2.7e-139 501.5 457 54.5
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 1.6e-123 449.1 1914 25.3
Ca_14860_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 9.5e-121 439.9 339 67.6
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 4.3e-113 414.5 322 65.5
SEGI_38328 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 2.9e-109 401.7 467 46.5
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.2e-107 396.4 301 66.8
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 4.6e-107 394.4 220 80.5
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 7.3e-97 360.5 247 77.7
VMungo1127G2045 Vigna mungo HOM05D004535 ORTHO05D005341 1.5e-89 336.3 271 62.0
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 3.7e-80 305.1 225 65.3
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.3e-77 296.6 359 50.4
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 2.5e-76 292.4 1687 22.8
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 7.9e-75 287.3 167 78.4
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 6.3e-72 277.7 346 47.4
SEGI_15666 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 5.0e-37 161.8 138 63.0
Cpa.g.sc12.82 Carica papaya HOM05D004535 ORTHO05D005341 2.3e-34 152.9 100 77.0
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 2.8e-32 146.0 657 25.0
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.2e-30 140.6 210 41.0
arahy.Tifrunner.gnm1.ann1.A7P7U5 Arachis hypogaea HOM05D004535 ORTHO05D005341 9.2e-23 114.4 106 64.2
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 4.5e-22 112.1 577 22.9
PSO541G1144 Papaver somniferum HOM05D004535 ORTHO05D005341 8.6e-21 107.8 76 63.2
Ca_31034_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 1.6e-19 103.6 72 70.8
Lsat_1_v5_gn_0_5420 Lactuca sativa HOM05D004535 ORTHO05D005341 2.1e-19 103.2 75 58.7
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 1.4e-18 100.5 65 78.5
arahy.Tifrunner.gnm1.ann1.QBA8JR Arachis hypogaea HOM05D004535 ORTHO05D005341 2.9e-16 92.8 160 42.5
arahy.Tifrunner.gnm1.ann1.6S2B7N Arachis hypogaea HOM05D012221 ORTHO05D005341 1.8e-15 90.1 176 39.2
VMungo0110G0001 Vigna mungo HOM05D004535 ORTHO05D005341 2.4e-15 89.7 69 65.2
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 5.0e-13 82.0 76 57.9
SEGI_18126 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.1e-12 80.9 72 45.8
arahy.Tifrunner.gnm1.ann1.EHT35G Arachis hypogaea HOM05D004535 ORTHO05D005341 1.9e-12 80.1 108 47.2
PGSC0003DMG402022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 3.6e-11 75.9 96 46.9
arahy.Tifrunner.gnm1.ann1.HQ6FCP Arachis hypogaea HOM05D004535 ORTHO05D005341 7.5e-09 68.2 167 37.1
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 2.7e-06 59.7 64 50.0
Psat4g112520 Pisum sativum HOM05D004535 ORTHO05D005341 6.0e-06 58.5 44 61.4


User provided reference genes

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