Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 3.6e-49 198.0 102 100.0
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 6.5e-43 177.2 102 89.2
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.5e-39 166.0 102 82.4
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.5e-39 166.0 102 82.4
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 1.7e-27 125.9 100 69.0
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 1.8e-16 89.4 95 49.5
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 1.8e-16 89.4 93 50.5
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 5.2e-16 87.8 80 56.2
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 4.4e-15 84.7 96 50.0
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 4.4e-15 84.7 101 49.5
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 7.5e-15 84.0 77 55.8
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 1.7e-14 82.8 77 59.7
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 8.3e-14 80.5 76 56.6
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 1.4e-13 79.7 96 45.8
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 3.2e-13 78.6 73 56.2
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 5.4e-13 77.8 78 55.1
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 9.2e-13 77.0 72 56.9
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 1.2e-12 76.6 79 48.1
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 1.2e-12 76.6 79 46.8
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 2.0e-12 75.9 77 55.8
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 4.6e-12 74.7 98 44.9
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 6.0e-12 74.3 68 57.4
ClCG10G004500 Citrullus lanatus HOM05D006736 ORTHO05D008459 7.8e-12 73.9 87 52.9
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 1.0e-11 73.6 98 43.9
RcHm_v2.0_Chr5g0075611 Rosa chinensis HOM05D006736 ORTHO05D008459 1.0e-11 73.6 87 48.3
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 1.7e-11 72.8 53 66.0
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 2.3e-11 72.4 94 43.6
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 2.3e-11 72.4 105 41.9
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 3.0e-11 72.0 70 55.7
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 3.9e-11 71.6 104 42.3
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 3.9e-11 71.6 89 49.4
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 3.9e-11 71.6 86 50.0
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 3.9e-11 71.6 77 50.6
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 5.0e-11 71.2 86 44.2
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 8.6e-11 70.5 79 45.6
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 1.1e-10 70.1 79 51.9
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 3.3e-10 68.6 79 46.8
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 4.3e-10 68.2 98 40.8
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 7.3e-10 67.4 89 43.8
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 7.3e-10 67.4 65 55.4
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 7.3e-10 67.4 104 44.2
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 9.5e-10 67.0 88 44.3
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 1.2e-09 66.6 71 52.1
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 1.2e-09 66.6 92 45.7
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 1.2e-09 66.6 98 39.8
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.2e-09 66.6 98 39.8
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.2e-09 66.6 98 39.8
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 2.1e-09 65.9 93 44.1
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 2.1e-09 65.9 86 48.8
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 2.8e-09 65.5 49 63.3
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 4.7e-09 64.7 99 41.4
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 4.7e-09 64.7 104 38.5
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 8.0e-09 63.9 63 55.6
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 1.4e-08 63.2 45 64.4
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 1.8e-08 62.8 83 43.4
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 1.8e-08 62.8 56 55.4
ATR0751G116 Amborella trichopoda HOM05D006736 ORTHO05D008459 2.3e-08 62.4 91 44.0
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 3.1e-08 62.0 85 43.5
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 3.1e-08 62.0 84 47.6
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 3.1e-08 62.0 87 40.2
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 3.1e-08 62.0 65 53.8
A10p13210 Brassica napus HOM05D006736 ORTHO05D008459 4.0e-08 61.6 40 67.5
BraA10t43419Z Brassica rapa HOM05D006736 ORTHO05D008459 4.0e-08 61.6 40 67.5
MBI14_g39127_MAGBIO Magnolia biondii HOM05D006736 ORTHO05D008459 5.2e-08 61.2 57 54.4
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 5.2e-08 61.2 94 41.5
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 6.8e-08 60.8 45 60.0
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 6.8e-08 60.8 45 60.0
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 8.9e-08 60.5 56 53.6
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 1.2e-07 60.1 88 45.5
Sp6g17830 Schrenkiella parvula HOM05D006736 ORTHO05D008459 1.2e-07 60.1 48 60.4
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 1.5e-07 59.7 76 44.7
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 1.5e-07 59.7 79 48.1
Atru.chr2.3834 Acer truncatum HOM05D006736 ORTHO05D008459 2.0e-07 59.3 87 46.0
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 2.0e-07 59.3 62 53.2
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 2.0e-07 59.3 77 48.1
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 2.0e-07 59.3 53 54.7
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 2.0e-07 59.3 53 54.7
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 2.6e-07 58.9 48 60.4
Thhalv10021795m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 2.6e-07 58.9 79 48.1
Gohir.A01G093700 Gossypium hirsutum HOM05D006736 ORTHO05D008459 2.6e-07 58.9 69 39.1
AL3G25020 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 3.4e-07 58.5 83 45.8
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 3.4e-07 58.5 99 41.4
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 4.4e-07 58.2 84 44.0
Carub.0008s1632 Capsella rubella HOM05D006736 ORTHO05D008459 4.4e-07 58.2 45 62.2
ECA234G2793 Erigeron canadensis HOM05D006736 ORTHO05D008459 4.4e-07 58.2 63 50.8
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 4.4e-07 58.2 42 69.0
BcaB01g04378 Brassica carinata HOM05D006736 ORTHO05D008459 5.8e-07 57.8 39 64.1
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 7.5e-07 57.4 69 39.1
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 7.5e-07 57.4 69 39.1
PGR083G0815 Punica granatum HOM05D006736 ORTHO05D008459 7.5e-07 57.4 98 39.8
Sp3g11420 Schrenkiella parvula HOM05D006736 ORTHO05D008459 7.5e-07 57.4 73 49.3
BcaB06g25478 Brassica carinata HOM05D006736 ORTHO05D008459 9.8e-07 57.0 80 47.5
BcaC05g29199 Brassica carinata HOM05D006736 ORTHO05D008459 9.8e-07 57.0 80 47.5
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 9.8e-07 57.0 76 46.1
TAR629G1528 Trochodendron aralioides HOM05D007247 ORTHO05D009208 9.8e-07 57.0 78 43.6
BolC5t34141H Brassica oleracea HOM05D006736 ORTHO05D008459 2.2e-06 55.8 48 64.6
CARHR087850 Cardamine hirsuta HOM05D006736 ORTHO05D008459 2.2e-06 55.8 79 46.8
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 2.2e-06 55.8 80 43.8
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 3.7e-06 55.1 53 56.6
DCAR_008749 Daucus carota HOM05D006736 ORTHO05D008459 3.7e-06 55.1 90 35.6
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 3.7e-06 55.1 72 45.8
Manes.12G022500 Manihot esculenta HOM05D007247 ORTHO05D009208 3.7e-06 55.1 69 47.8
BcaC01g04005 Brassica carinata HOM05D006736 ORTHO05D008459 6.4e-06 54.3 80 43.8
A03p38090 Brassica napus HOM05D006736 ORTHO05D008459 6.4e-06 54.3 80 43.8
C03p46220 Brassica napus HOM05D006736 ORTHO05D008459 6.4e-06 54.3 80 43.8
BraA03t12962Z Brassica rapa HOM05D006736 ORTHO05D008459 6.4e-06 54.3 80 43.8
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 6.4e-06 54.3 73 43.8
THA.LOC104822717 Tarenaya hassleriana HOM05D006736 ORTHO05D008459 6.4e-06 54.3 97 43.3
Aa31sc790G10 Aethionema arabicum HOM05D007247 ORTHO05D009208 8.3e-06 53.9 58 51.7
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 8.3e-06 53.9 60 46.7
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 8.3e-06 53.9 70 50.0


User provided reference genes

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