Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G003110 Cucumis sativus L. HOM05D005835 ORTHO05D007187 3.9e-99 364.8 182 100.0
MELO3C013977.2 Cucumis melo HOM05D005835 ORTHO05D007187 2.5e-93 345.5 182 94.0
ClCG10G003070 Citrullus lanatus HOM05D005835 ORTHO05D007187 4.8e-89 331.3 182 90.1
Sed0018910 Sechium edule HOM05D005835 ORTHO05D007187 4.2e-77 291.6 182 77.5
Prupe.4G260700 Prunus persica HOM05D005835 ORTHO05D007187 1.4e-59 233.4 182 64.8
Haze_08597 Corylus avellana HOM05D005835 ORTHO05D007187 3.4e-58 228.8 183 66.1
CiPaw.12G105500 Carya illinoinensis HOM05D005835 ORTHO05D007187 3.2e-56 222.2 182 64.3
MD04G1080500 Malus domestica HOM05D005835 ORTHO05D007187 4.6e-55 218.4 182 62.6
Manes.01G074300 Manihot esculenta HOM05D005835 ORTHO05D007187 7.8e-55 217.6 179 62.6
Hma1.2p1_2131F.1_g314730 Hydrangea macrophylla HOM05D005835 ORTHO05D007187 1.0e-54 217.2 183 61.2
Dinv21579 Davidia involucrata HOM05D005835 ORTHO05D007187 3.9e-54 215.3 176 64.2
CiPaw.11G149200 Carya illinoinensis HOM05D005835 ORTHO05D007187 1.5e-53 213.4 180 62.2
Cpa.g.sc29.103 Carica papaya HOM05D005835 ORTHO05D007187 3.3e-53 212.2 182 58.2
Dinv39089 Davidia involucrata HOM05D005835 ORTHO05D007187 5.6e-53 211.5 175 63.4
Cfa012808 Carpinus fangiana HOM05D005835 ORTHO05D007187 9.5e-53 210.7 181 63.0
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 9.5e-53 210.7 182 61.0
TWI81G0081 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 2.8e-52 209.1 181 57.5
FAN08G1980 Fragaria x ananassa HOM05D005835 ORTHO05D007187 3.6e-52 208.8 183 57.9
FAN13G2021 Fragaria x ananassa HOM05D005835 ORTHO05D007187 3.6e-52 208.8 183 57.9
FvH4_5g00490 Fragaria vesca HOM05D005835 ORTHO05D007187 4.7e-52 208.4 183 57.9
FAN18G1180 Fragaria x ananassa HOM05D005835 ORTHO05D007187 4.7e-52 208.4 183 57.9
Duzib068G0435 Durio zibethinus HOM05D005835 ORTHO05D007187 1.5e-50 203.4 182 57.1
FAN04G1493 Fragaria x ananassa HOM05D005835 ORTHO05D007187 2.0e-50 203.0 183 57.4
Duzib205G1381 Durio zibethinus HOM05D005835 ORTHO05D007187 3.4e-50 202.2 180 56.1
Eucgr.E01477 Eucalyptus grandis HOM05D005835 ORTHO05D007187 7.5e-50 201.1 181 58.6
TAR375G0176 Trochodendron aralioides HOM05D005835 ORTHO05D007187 9.8e-50 200.7 173 61.8
Atru.chr9.1404 Acer truncatum HOM05D005835 ORTHO05D007187 1.3e-49 200.3 178 58.4
Sabra03G0079300 Salix brachista HOM05D005835 ORTHO05D007187 1.7e-49 199.9 182 56.0
Potri.001G118700 Populus trichocarpa HOM05D005835 ORTHO05D007187 6.4e-49 198.0 182 57.1
TAR374G0447 Trochodendron aralioides HOM05D005835 ORTHO05D007187 6.4e-49 198.0 180 59.4
Manes.02G034200 Manihot esculenta HOM05D005835 ORTHO05D007187 1.9e-48 196.4 180 56.1
MBI04_g35668_MAGBIO Magnolia biondii HOM05D005835 ORTHO05D007187 2.4e-48 196.1 179 58.1
QL03p017823 Quercus lobata HOM05D005835 ORTHO05D007187 3.2e-48 195.7 182 58.2
Potri.003G114200 Populus trichocarpa HOM05D005835 ORTHO05D007187 4.1e-48 195.3 182 56.6
Rhsim07G0102800 Rhododendron simsii HOM05D005835 ORTHO05D007187 5.4e-48 194.9 171 59.6
QL93p2009_0035 Quercus lobata HOM05D005835 ORTHO05D007187 7.0e-48 194.5 182 57.7
Nitab4.5_0005535g0030 Nicotiana tabacum HOM05D005835 ORTHO05D007187 9.2e-48 194.1 183 55.7
CANSAT21G1576 Cannabis sativa HOM05D005835 ORTHO05D007187 1.2e-47 193.7 181 58.0
Migut.A00868 Erythranthe guttata HOM05D005835 ORTHO05D007187 1.6e-47 193.4 183 56.3
Oeu040228.1 Olea europaea HOM05D005835 ORTHO05D007187 1.6e-47 193.4 183 55.7
RcHm_v2.0_Chr7g0202021 Rosa chinensis HOM05D005835 ORTHO05D007187 1.6e-47 193.4 183 56.8
PGSC0003DMG400029987 Solanum tuberosum HOM05D005835 ORTHO05D007187 2.0e-47 193.0 183 55.7
CAN.G1528.1 Capsicum annuum HOM05D005835 ORTHO05D007187 4.6e-47 191.8 179 55.3
MSTRG.12070 Avicennia marina HOM05D005835 ORTHO05D007187 6.0e-47 191.4 183 61.7
Migut.A00824 Erythranthe guttata HOM05D005835 ORTHO05D007187 6.0e-47 191.4 183 55.7
Nn1g01126 Nelumbo nucifera HOM05D005835 ORTHO05D007187 6.0e-47 191.4 181 56.9
Nitab4.5_0005230g0060 Nicotiana tabacum HOM05D005835 ORTHO05D007187 1.0e-46 190.7 183 54.6
Nn1g01130 Nelumbo nucifera HOM05D005835 ORTHO05D007187 2.3e-46 189.5 181 56.4
Cc08_g13120 Coffea canephora HOM05D005835 ORTHO05D007187 3.9e-46 188.7 180 57.8
Solyc11g065270.2 Solanum lycopersicum HOM05D005835 ORTHO05D007187 6.6e-46 188.0 183 55.2
Thecc.03G259800 Theobroma cacao HOM05D005835 ORTHO05D007187 8.6e-46 187.6 182 54.4
Sopen11g025020 Solanum pennellii HOM05D005835 ORTHO05D007187 1.9e-45 186.4 183 55.2
Ciclev10022502m.g Citrus clementina HOM05D005835 ORTHO05D007187 2.5e-45 186.0 182 54.4
Aqoxy7G00679 Aquilegia oxysepala HOM05D005835 ORTHO05D007187 3.3e-45 185.7 176 55.7
Peaxi162Scf00004g03718 Petunia axillaris HOM05D005835 ORTHO05D007187 4.3e-45 185.3 175 54.3
Sc02g0009280 Simmondsia chinensis HOM05D005835 ORTHO05D007187 1.6e-44 183.3 178 54.5
QL12p014300 Quercus lobata HOM05D005835 ORTHO05D007187 3.6e-44 182.2 173 57.2
Duzib084G0572 Durio zibethinus HOM05D005835 ORTHO05D007187 4.7e-44 181.8 180 54.4
Gohir.D03G159700 Gossypium hirsutum HOM05D005835 ORTHO05D007187 6.2e-44 181.4 182 52.2
SalBow6G1585 Salvia bowleyana HOM05D005835 ORTHO05D007187 6.2e-44 181.4 174 55.7
Sc16g0006190 Simmondsia chinensis HOM05D005835 ORTHO05D007187 6.2e-44 181.4 175 52.6
Gohir.D12G222800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 4.0e-43 178.7 183 53.0
Gorai.008G238900 Gossypium raimondii HOM05D005835 ORTHO05D007187 4.0e-43 178.7 183 53.0
ECA233G2089 Erigeron canadensis HOM05D005835 ORTHO05D007187 6.8e-43 177.9 181 54.1
Gorai.003G168000 Gossypium raimondii HOM05D005835 ORTHO05D007187 8.9e-43 177.6 182 51.6
Sabra01G0091600 Salix brachista HOM05D005835 ORTHO05D007187 8.9e-43 177.6 182 53.8
COL.COLO4_23892 Corchorus olitorius HOM05D005835 ORTHO05D007187 3.4e-42 175.6 182 53.3
Gohir.A03G013800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 5.8e-42 174.9 182 50.5
arahy.Tifrunner.gnm1.ann1.7G3HX4 Arachis hypogaea HOM05D005835 ORTHO05D007187 9.8e-42 174.1 171 53.8
PGR031G1343 Punica granatum HOM05D005835 ORTHO05D007187 3.7e-41 172.2 182 52.7
AUR62029858 Chenopodium quinoa HOM05D005835 ORTHO05D007187 8.3e-41 171.0 173 52.0
Gohir.A12G220500 Gossypium hirsutum HOM05D005835 ORTHO05D007187 8.3e-41 171.0 183 51.4
Lalb_Chr05g0225471 Lupinus albus HOM05D005835 ORTHO05D007187 1.1e-40 170.6 171 53.2
SGA_v2.0_scaffold120G32837 Striga asiatica HOM05D005835 ORTHO05D007187 1.1e-40 170.6 179 53.1
AUR62025857 Chenopodium quinoa HOM05D005835 ORTHO05D007187 1.9e-40 169.9 173 50.9
EL10Ac4g07900 Beta vulgaris HOM05D005835 ORTHO05D007187 3.2e-40 169.1 174 50.0
SGA_v2.0_scaffold146G36171 Striga asiatica HOM05D005835 ORTHO05D007187 3.2e-40 169.1 181 52.5
PSO782G1790 Papaver somniferum HOM05D005835 ORTHO05D007187 4.1e-40 168.7 190 51.6
PSO478G0096 Papaver somniferum HOM05D005835 ORTHO05D007187 7.1e-40 167.9 192 52.1
HanXRQChr02g0049681 Helianthus annuus HOM05D005835 ORTHO05D007187 1.2e-39 167.2 182 52.7
Ah.01g013950 Amaranthus hybridus HOM05D005835 ORTHO05D007187 2.1e-39 166.4 169 52.1
HanXRQChr13g0394681 Helianthus annuus HOM05D005835 ORTHO05D007187 2.1e-39 166.4 180 51.7
arahy.Tifrunner.gnm1.ann1.4SJ6CH Arachis hypogaea HOM05D005835 ORTHO05D007187 2.7e-39 166.0 166 53.0
Hund02098 Selenicereus undatus HOM05D005835 ORTHO05D007187 1.0e-38 164.1 172 49.4
Aa31LG9G10270 Aethionema arabicum HOM05D005835 ORTHO05D007187 5.1e-38 161.8 184 51.6
Lalb_Chr16g0389651 Lupinus albus HOM05D005835 ORTHO05D007187 5.1e-38 161.8 171 51.5
CDE02G0720 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 1.1e-37 160.6 182 48.4
Glyma.05G051800 Glycine max HOM05D005835 ORTHO05D007187 1.2e-36 157.1 171 50.9
Sp6g05250 Schrenkiella parvula HOM05D005835 ORTHO05D007187 1.2e-36 157.1 180 47.8
Phvul.003G214325 Phaseolus vulgaris HOM05D005835 ORTHO05D007187 3.6e-36 155.6 171 49.7
CDE04G3390 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 8.1e-36 154.5 180 47.2
Ca_12275_v3 Cicer arietinum L. HOM05D005835 ORTHO05D007187 8.1e-36 154.5 171 50.3
AL6G47200 Arabidopsis lyrata HOM05D005835 ORTHO05D007187 1.1e-35 154.1 182 47.8
Psat0s1988g0040 Pisum sativum HOM05D005835 ORTHO05D007187 1.8e-35 153.3 171 50.3
Medtr4g102330 Medicago truncatula HOM05D005835 ORTHO05D007187 5.2e-35 151.8 171 50.3
TPR.G37587 Trifolium pratense HOM05D005835 ORTHO05D007187 1.5e-34 150.2 171 51.5
VMungo1215G0693 Vigna mungo HOM05D005835 ORTHO05D007187 2.6e-34 149.4 171 48.0
AT4G12340 Arabidopsis thaliana HOM05D005835 ORTHO05D007187 4.4e-34 148.7 182 45.6
C02p40850 Brassica napus HOM05D005835 ORTHO05D007187 4.4e-34 148.7 180 45.6
BcaC03g16290 Brassica carinata HOM05D005835 ORTHO05D007187 5.8e-34 148.3 180 45.6
BolC2t10102H Brassica oleracea HOM05D005835 ORTHO05D007187 5.8e-34 148.3 180 45.6
TWI15G0429 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 5.8e-34 148.3 118 61.0
CSS0045584 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 7.6e-34 147.9 114 61.4
CARHR253910 Cardamine hirsuta HOM05D005835 ORTHO05D007187 2.2e-33 146.4 177 45.8
Carub.0006s3148 Capsella rubella HOM05D005835 ORTHO05D007187 3.8e-33 145.6 182 46.2
A02p25690 Brassica napus HOM05D005835 ORTHO05D007187 6.4e-33 144.8 180 44.4
A09p26960 Brassica napus HOM05D005835 ORTHO05D007187 6.4e-33 144.8 182 45.1
C09p34190 Brassica napus HOM05D005835 ORTHO05D007187 6.4e-33 144.8 182 45.6
BolC9t56264H Brassica oleracea HOM05D005835 ORTHO05D007187 6.4e-33 144.8 182 45.6
BraA09t38266Z Brassica rapa HOM05D005835 ORTHO05D007187 6.4e-33 144.8 182 45.1
GSVIVG01004287001 Vitis vinifera HOM05D005835 ORTHO05D007187 6.4e-33 144.8 178 46.1
CSS0008349 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 1.1e-32 144.1 183 47.0
GSVIVG01007420001 Vitis vinifera HOM05D005835 ORTHO05D007187 1.1e-32 144.1 177 46.3
BraA02t07561Z Brassica rapa HOM05D005835 ORTHO05D007187 3.2e-32 142.5 180 43.9
Zm00001eb356210 Zea mays HOM05D005835 ORTHO05D007187 7.1e-32 141.4 171 47.4
Os05g0103500 Oryza sativa ssp. japonica HOM05D005835 ORTHO05D007187 1.2e-31 140.6 181 47.0
BcaC04g21221 Brassica carinata HOM05D005835 ORTHO05D007187 7.8e-31 137.9 175 45.1
Thhalv10029018m.g Eutrema salsugineum HOM05D005835 ORTHO05D007187 7.8e-31 137.9 178 44.9
SHI20590 Sapria himalayana HOM05D005835 ORTHO05D007187 1.0e-30 137.5 182 46.7
ATR0115G012 Amborella trichopoda HOM05D005835 ORTHO05D007187 1.7e-30 136.7 179 50.8
BcaB01g01732 Brassica carinata HOM05D005835 ORTHO05D007187 3.9e-30 135.6 181 43.6
BcaB05g23754 Brassica carinata HOM05D005835 ORTHO05D007187 8.6e-30 134.4 180 42.8
HPP92_005292 Vanilla planifolia HOM05D005835 ORTHO05D007187 1.9e-29 133.3 177 47.5
THA.LOC104806344 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 9.6e-29 131.0 195 43.1
Lsat_1_v5_gn_6_4381 Lactuca sativa HOM05D005835 ORTHO05D007187 1.2e-28 130.6 173 46.2
THA.LOC104813805 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 1.4e-27 127.1 184 44.6
SEGI_03973 Sequoiadendron giganteum HOM05D005835 ORTHO05D007187 1.2e-23 114.0 188 41.5
CARHR253930 Cardamine hirsuta HOM05D005835 ORTHO05D007187 2.7e-23 112.8 112 50.9
Actinidia05173 Actinidia chinensis HOM05D005835 ORTHO05D000538 8.7e-22 107.8 115 54.8
Mapoly0001s0295 Marchantia polymorpha HOM05D005835 ORTHO05D007187 5.1e-14 82.0 182 33.0
Pp3c8_11610 Physcomitrium patens HOM05D005835 ORTHO05D007187 1.5e-10 70.5 180 30.6
CBR_g50926 Chara braunii HOM05D005835 ORTHO05D007187 7.6e-10 68.2 92 41.3
Pp3c15_5650 Physcomitrium patens HOM05D005835 ORTHO05D007187 7.6e-10 68.2 183 29.0


User provided reference genes

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