Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G002920 Cucumis sativus L. HOM05D033278 ORTHO05D028930 1.0e-55 219.9 116 100.0
CsaV3_3G002930 Cucumis sativus L. HOM05D033278 ORTHO05D028930 1.3e-23 113.2 118 57.6
MELO3C013956.2 Cucumis melo HOM05D033278 ORTHO05D028930 1.8e-20 102.8 120 52.5
ClCG10G002870 Citrullus lanatus HOM05D000220 ORTHO05D028930 7.0e-17 90.9 116 46.6
Duzib138G0266 Durio zibethinus HOM05D000220 ORTHO05D000141 1.3e-07 60.1 127 35.4
MELO3C032267.2 Cucumis melo HOM05D000220 ORTHO05D044898 1.7e-07 59.7 129 35.7
Gohir.D08G190000 Gossypium hirsutum HOM05D000220 ORTHO05D000141 5.0e-07 58.2 125 34.4
Gorai.004G199900 Gossypium raimondii HOM05D000220 ORTHO05D000141 6.6e-07 57.8 127 34.6
DCAR_029826 Daucus carota HOM05D000220 ORTHO05D000141 1.1e-06 57.0 115 36.5
Gorai.004G200400 Gossypium raimondii HOM05D000220 ORTHO05D000141 1.1e-06 57.0 125 33.6
Manes.01G078200 Manihot esculenta HOM05D000220 ORTHO05D000141 1.1e-06 57.0 123 32.5
Nitab4.5_0003417g0010 Nicotiana tabacum HOM05D000220 ORTHO05D000141 1.1e-06 57.0 118 33.9
MSTRG.12080 Avicennia marina HOM05D000220 ORTHO05D000141 1.5e-06 56.6 117 35.0
MSTRG.25532 Avicennia marina HOM05D000220 ORTHO05D000141 1.5e-06 56.6 109 34.9
DCAR_028070 Daucus carota HOM05D000220 ORTHO05D000141 1.5e-06 56.6 118 34.7
Solyc03g083993.1 Solanum lycopersicum HOM05D000220 ORTHO05D000141 1.5e-06 56.6 115 33.0
Solyc03g083994.1 Solanum lycopersicum HOM05D000220 ORTHO05D000141 1.5e-06 56.6 115 33.0
PGSC0003DMG400036126 Solanum tuberosum HOM05D000220 ORTHO05D000141 1.5e-06 56.6 122 31.1
Duzib205G0796 Durio zibethinus HOM05D000220 ORTHO05D000141 1.9e-06 56.2 126 34.1
PGR031G3466 Punica granatum HOM05D000220 ORTHO05D000141 1.9e-06 56.2 111 34.2
Solyc03g083990.1 Solanum lycopersicum HOM05D000220 ORTHO05D000141 1.9e-06 56.2 115 33.0
Solyc03g083995.1 Solanum lycopersicum HOM05D000220 ORTHO05D000141 1.9e-06 56.2 115 33.0
AT4G12545 Arabidopsis thaliana HOM05D000220 ORTHO05D000141 2.5e-06 55.8 106 34.9
Peaxi162Scf00045g01313 Petunia axillaris HOM05D000220 ORTHO05D000141 2.5e-06 55.8 132 30.3
CAN.G940.16 Capsicum annuum HOM05D000220 ORTHO05D000141 3.3e-06 55.5 130 33.1
Sed0003362 Sechium edule HOM05D000220 ORTHO05D000141 4.2e-06 55.1 129 29.5
PGSC0003DMG400013860 Solanum tuberosum HOM05D000220 ORTHO05D000141 4.2e-06 55.1 122 32.0
Carub.0006s3179 Capsella rubella HOM05D000220 ORTHO05D000141 5.5e-06 54.7 105 33.3
Carub.0006s3180 Capsella rubella HOM05D000220 ORTHO05D000141 5.5e-06 54.7 106 34.0
DCAR_029317 Daucus carota HOM05D000220 ORTHO05D000141 5.5e-06 54.7 114 34.2
DCAR_029318 Daucus carota HOM05D000220 ORTHO05D000141 5.5e-06 54.7 114 34.2
Gohir.A12G148750 Gossypium hirsutum HOM05D000220 ORTHO05D000141 5.5e-06 54.7 113 35.4
Gohir.D08G189900 Gossypium hirsutum HOM05D000220 ORTHO05D000141 5.5e-06 54.7 127 33.9
Peaxi162Scf00213g00153 Petunia axillaris HOM05D000220 ORTHO05D000141 5.5e-06 54.7 121 33.9
BraA02t07542Z Brassica rapa HOM05D000220 ORTHO05D000141 7.2e-06 54.3 107 35.5
DCAR_028071 Daucus carota HOM05D000220 ORTHO05D000141 7.2e-06 54.3 118 33.1
Nitab4.5_0000860g0060 Nicotiana tabacum HOM05D000220 ORTHO05D000141 7.2e-06 54.3 131 32.1
Nitab4.5_0003763g0030 Nicotiana tabacum HOM05D000220 ORTHO05D000141 7.2e-06 54.3 132 30.3
PGSC0003DMG400014850 Solanum tuberosum HOM05D000220 ORTHO05D000141 7.2e-06 54.3 131 33.6
BcaB05g23742 Brassica carinata HOM05D000220 ORTHO05D000141 9.5e-06 53.9 107 35.5
BcaC03g16276 Brassica carinata HOM05D000220 ORTHO05D000141 9.5e-06 53.9 107 36.4
BcaC04g21237 Brassica carinata HOM05D000220 ORTHO05D000141 9.5e-06 53.9 93 36.6
A02p25520 Brassica napus HOM05D000220 ORTHO05D000141 9.5e-06 53.9 107 35.5
A02p25550 Brassica napus HOM05D000220 ORTHO05D000141 9.5e-06 53.9 107 35.5
C09p34010 Brassica napus HOM05D000220 ORTHO05D000141 9.5e-06 53.9 93 36.6
BolC2t10089H Brassica oleracea HOM05D000220 ORTHO05D000141 9.5e-06 53.9 107 36.4
BolC9t56239H Brassica oleracea HOM05D000220 ORTHO05D000141 9.5e-06 53.9 93 36.6
DCAR_008474 Daucus carota HOM05D000220 ORTHO05D000141 9.5e-06 53.9 121 31.4
Gohir.A08G171500 Gossypium hirsutum HOM05D000220 ORTHO05D000141 9.5e-06 53.9 126 31.0
Gohir.A11G025900 Gossypium hirsutum HOM05D000220 ORTHO05D000141 9.5e-06 53.9 125 31.2
Gohir.D08G189800 Gossypium hirsutum HOM05D000220 ORTHO05D000141 9.5e-06 53.9 126 31.0
Nitab4.5_0002588g0020 Nicotiana tabacum HOM05D000220 ORTHO05D000141 9.5e-06 53.9 123 33.3


User provided reference genes

Program Settings