Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G002820 Cucumis sativus L. HOM05D006632 ORTHO05D008224 7.2e-127 457.2 225 100.0
MELO3C013948.2 Cucumis melo HOM05D006632 ORTHO05D008224 4.1e-114 414.8 240 87.5
Sed0019633 Sechium edule HOM05D006632 ORTHO05D008224 2.0e-108 396.0 240 82.5
ClCG10G002780 Citrullus lanatus HOM05D006632 ORTHO05D008224 1.3e-107 393.3 233 85.0
Solyc08g007410.4 Solanum lycopersicum HOM05D006632 ORTHO05D008224 9.2e-90 334.0 207 76.3
Sopen08g003360 Solanum pennellii HOM05D006632 ORTHO05D008224 6.0e-89 331.3 207 76.3
Nitab4.5_0004059g0060 Nicotiana tabacum HOM05D006632 ORTHO05D008224 1.3e-88 330.1 186 83.3
Cfa012746 Carpinus fangiana HOM05D006632 ORTHO05D008224 3.0e-88 328.9 221 71.9
Psat4g070160 Pisum sativum HOM05D006632 ORTHO05D008224 3.9e-88 328.6 184 83.7
TPR.G37669 Trifolium pratense HOM05D006632 ORTHO05D008224 1.9e-87 326.2 199 77.4
Oeu062975.1 Olea europaea HOM05D006632 ORTHO05D008224 4.3e-87 325.1 207 74.9
Haze_07882 Corylus avellana HOM05D006632 ORTHO05D008224 5.6e-87 324.7 217 73.7
Manes.01G079200 Manihot esculenta HOM05D006632 ORTHO05D008224 5.6e-87 324.7 214 76.2
PGSC0003DMG400012506 Solanum tuberosum HOM05D006632 ORTHO05D008224 7.3e-87 324.3 207 74.9
Migut.A00961 Erythranthe guttata HOM05D006632 ORTHO05D008224 2.8e-86 322.4 237 67.9
Thecc.03G254100 Theobroma cacao HOM05D006632 ORTHO05D008224 3.6e-86 322.0 222 71.6
TWI81G0482 Tripterygium wilfordii HOM05D006632 ORTHO05D008224 3.6e-86 322.0 193 77.7
Gorai.008G238100 Gossypium raimondii HOM05D006632 ORTHO05D008224 4.7e-86 321.6 223 71.7
Nitab4.5_0001707g0010 Nicotiana tabacum HOM05D006632 ORTHO05D008224 4.7e-86 321.6 209 74.6
GSVIVG01001305001 Vitis vinifera HOM05D006632 ORTHO05D008224 4.7e-86 321.6 224 71.0
Actinidia05199 Actinidia chinensis HOM05D006632 ORTHO05D008224 1.1e-85 320.5 210 73.8
Gohir.A12G219900 Gossypium hirsutum HOM05D006632 ORTHO05D008224 1.1e-85 320.5 223 71.7
Nn6g34002 Nelumbo nucifera HOM05D006632 ORTHO05D008224 1.1e-85 320.5 208 75.0
CiPaw.11G152400 Carya illinoinensis HOM05D006632 ORTHO05D008224 1.4e-85 320.1 182 80.2
Duzib205G0315 Durio zibethinus HOM05D006632 ORTHO05D008224 1.4e-85 320.1 208 73.6
CANSAT21G1011 Cannabis sativa HOM05D006632 ORTHO05D008224 3.1e-85 318.9 221 70.1
Gohir.D12G222100 Gossypium hirsutum HOM05D006632 ORTHO05D008224 4.0e-85 318.5 223 70.9
Potri.003G111100 Populus trichocarpa HOM05D006632 ORTHO05D008224 4.0e-85 318.5 183 80.9
Potri.008G135980 Populus trichocarpa HOM05D006632 ORTHO05D008224 4.0e-85 318.5 183 80.9
CARHR222910 Cardamine hirsuta HOM05D006632 ORTHO05D008224 6.8e-85 317.8 208 73.1
Glyma.05G058200 Glycine max HOM05D006632 ORTHO05D008224 6.8e-85 317.8 222 70.3
Phvul.003G219500 Phaseolus vulgaris HOM05D006632 ORTHO05D008224 1.5e-84 316.6 222 69.4
Hma1.2p1_0916F.1_g236520 Hydrangea macrophylla HOM05D006632 ORTHO05D008224 5.8e-84 314.7 209 74.2
Carub.0007s2499 Capsella rubella HOM05D006632 ORTHO05D008224 7.5e-84 314.3 207 72.5
Lj2A215T22 Lonicera japonica HOM05D006632 ORTHO05D008224 7.5e-84 314.3 221 69.2
AT4G16510 Arabidopsis thaliana HOM05D006632 ORTHO05D008224 9.8e-84 313.9 207 72.5
Ciclev10022042m.g Citrus clementina HOM05D006632 ORTHO05D008224 9.8e-84 313.9 183 80.3
Lsat_1_v5_gn_6_91561 Lactuca sativa HOM05D006632 ORTHO05D008224 9.8e-84 313.9 221 69.2
THA.LOC104814709 Tarenaya hassleriana HOM05D006632 ORTHO05D008224 9.8e-84 313.9 179 80.4
VMungo0251G2371 Vigna mungo HOM05D006632 ORTHO05D008224 9.8e-84 313.9 222 69.4
Medtr4g101100 Medicago truncatula HOM05D006632 ORTHO05D008224 1.3e-83 313.5 200 74.0
Rhsim07G0107100 Rhododendron simsii HOM05D006632 ORTHO05D008224 1.3e-83 313.5 196 75.5
Lalb_Chr05g0225741 Lupinus albus HOM05D006632 ORTHO05D008224 1.7e-83 313.2 219 69.9
AL7G38450 Arabidopsis lyrata HOM05D006632 ORTHO05D008224 2.2e-83 312.8 208 72.6
CAN.G1227.10 Capsicum annuum HOM05D006632 ORTHO05D008224 2.2e-83 312.8 175 82.3
RcHm_v2.0_Chr7g0202881 Rosa chinensis HOM05D006632 ORTHO05D008224 2.2e-83 312.8 229 67.2
A08p12540 Brassica napus HOM05D006632 ORTHO05D008224 2.9e-83 312.4 223 68.2
BraA08t33245Z Brassica rapa HOM05D006632 ORTHO05D008224 2.9e-83 312.4 223 68.2
Prupe.5G072600 Prunus persica HOM05D006632 ORTHO05D008224 2.9e-83 312.4 201 74.1
Aa31LG2G12620 Aethionema arabicum HOM05D006632 ORTHO05D008224 4.9e-83 311.6 194 75.3
Atru.chr9.1340 Acer truncatum HOM05D006632 ORTHO05D008224 8.3e-83 310.8 224 68.3
arahy.Tifrunner.gnm1.ann1.UQJ0AM Arachis hypogaea HOM05D006632 ORTHO05D008224 8.3e-83 310.8 223 69.5
arahy.Tifrunner.gnm1.ann1.E5X9TE Arachis hypogaea HOM05D006632 ORTHO05D008224 1.1e-82 310.5 223 69.5
Cc08_g12700 Coffea canephora HOM05D006632 ORTHO05D008224 1.1e-82 310.5 232 67.2
BolC8t48376H Brassica oleracea HOM05D006632 ORTHO05D008224 2.4e-82 309.3 223 66.8
Lj4g0001078 Lotus japonicus HOM05D006632 ORTHO05D008224 3.2e-82 308.9 226 69.0
MSTRG.25531 Avicennia marina HOM05D006632 ORTHO05D008224 4.1e-82 308.5 227 69.2
CSS0044555 Camellia sinensis var. sinensis HOM05D006632 ORTHO05D008224 2.1e-81 306.2 238 65.5
DCAR_027784 Daucus carota HOM05D006632 ORTHO05D008224 2.1e-81 306.2 232 67.2
MD06G1061300 Malus domestica HOM05D006632 ORTHO05D008224 3.5e-81 305.4 181 77.9
ECA240G2825 Erigeron canadensis HOM05D006632 ORTHO05D008224 4.6e-81 305.1 221 66.5
FAN18G2132 Fragaria x ananassa HOM05D006632 ORTHO05D008224 7.8e-81 304.3 224 67.4
Sp7g15070 Schrenkiella parvula HOM05D006632 ORTHO05D008224 7.8e-81 304.3 207 69.6
HanXRQChr03g0088651 Helianthus annuus HOM05D006632 ORTHO05D008224 1.0e-80 303.9 218 69.7
Nitab4.5_0000312g0210 Nicotiana tabacum HOM05D006632 ORTHO05D008224 1.3e-80 303.5 181 77.9
PSO063G6697 Papaver somniferum HOM05D006632 ORTHO05D008224 3.0e-80 302.4 211 67.3
PSO782G3692 Papaver somniferum HOM05D006632 ORTHO05D008224 3.9e-80 302.0 181 75.1
Thhalv10026162m.g Eutrema salsugineum HOM05D006632 ORTHO05D008224 6.6e-80 301.2 207 69.6
AUR62039953 Chenopodium quinoa HOM05D006632 ORTHO05D008224 2.5e-79 299.3 204 71.1
Sabra03G0077000 Salix brachista HOM05D006632 ORTHO05D008224 5.6e-79 298.1 224 65.2
EL10Ac5g13049 Beta vulgaris HOM05D006632 ORTHO05D008224 7.3e-79 297.7 194 72.7
Ah.12g056690 Amaranthus hybridus HOM05D006632 ORTHO05D008224 9.5e-79 297.4 221 65.6
unitig_27.g25096 Utricularia gibba HOM05D006632 ORTHO05D008224 2.1e-78 296.2 224 65.2
CDE02G1947 Ceratophyllum demersum HOM05D006632 ORTHO05D008224 2.8e-78 295.8 182 74.7
AUR62007500 Chenopodium quinoa HOM05D006632 ORTHO05D008224 4.7e-78 295.0 189 75.1
Eucgr.E00435 Eucalyptus grandis HOM05D006632 ORTHO05D008224 6.2e-78 294.7 181 75.7
Aqoxy5G03914 Aquilegia oxysepala HOM05D006632 ORTHO05D008224 1.1e-77 293.9 203 70.0
SGA_v2.0_scaffold120G32870 Striga asiatica HOM05D006632 ORTHO05D008224 2.3e-77 292.7 288 57.3
PGR042G2887 Punica granatum HOM05D006632 ORTHO05D008224 4.0e-77 292.0 235 61.3
FAN08G0873 Fragaria x ananassa HOM05D006632 ORTHO05D008224 2.0e-76 289.7 231 63.6
vmacro14091 Vaccinium macrocarpon HOM05D006632 ORTHO05D008224 2.6e-76 289.3 267 57.3
FAN13G0450 Fragaria x ananassa HOM05D006632 ORTHO05D008224 5.8e-76 288.1 220 65.0
FAN04G0341 Fragaria x ananassa HOM05D006632 ORTHO05D008224 7.6e-76 287.7 228 64.0
Rhsim07G0106500 Rhododendron simsii HOM05D006632 ORTHO05D008224 1.3e-75 287.0 263 56.7
HPP92_014478 Vanilla planifolia HOM05D006632 ORTHO05D008224 1.7e-72 276.6 215 62.8
Os02g0662200 Oryza sativa ssp. japonica HOM05D006632 ORTHO05D008224 4.3e-71 271.9 195 65.6
BcaC07g37993 Brassica carinata HOM05D006632 ORTHO05D008224 3.6e-70 268.9 196 66.8
Peaxi162Scf00102g01151 Petunia axillaris HOM05D006632 ORTHO05D008224 3.6e-70 268.9 181 72.4
SEGI_31519 Sequoiadendron giganteum HOM05D006632 ORTHO05D008224 1.1e-69 267.3 192 66.1
Sc01g0008570 Simmondsia chinensis HOM05D006632 ORTHO05D008224 5.2e-69 265.0 160 76.2
SMO143G0241 Selaginella moellendorffii HOM05D006632 ORTHO05D008224 6.8e-69 264.6 182 65.9
Dinv21617 Davidia involucrata HOM05D006632 ORTHO05D008224 2.2e-67 259.6 225 61.8
Mapoly0121s0036 Marchantia polymorpha HOM05D006632 ORTHO05D008224 1.9e-66 256.5 184 66.3
Pp3c24_4050 Physcomitrium patens HOM05D006632 ORTHO05D008224 4.2e-66 255.4 178 65.7
Zm00001eb249830 Zea mays HOM05D006632 ORTHO05D008224 5.4e-66 255.0 196 61.7
QL12p012693 Quercus lobata HOM05D006632 ORTHO05D008224 5.6e-63 245.0 184 67.9
MD00G1115100 Malus domestica HOM05D006632 ORTHO05D008224 6.9e-61 238.0 214 57.5
Hund14588 Selenicereus undatus HOM05D006632 ORTHO05D008224 7.6e-60 234.6 354 41.5
CBR_g26463 Chara braunii HOM05D006632 ORTHO05D008224 2.1e-57 226.5 185 55.7
Nitab4.5_0017825g0010 Nicotiana tabacum HOM05D006632 ORTHO05D008224 5.6e-55 218.4 183 59.0
DCAR_004945 Daucus carota HOM05D006632 ORTHO05D008224 1.1e-53 214.2 223 52.0
Cre07.g338250 Chlamydomonas reinhardtii HOM05D006632 ORTHO05D008224 1.6e-46 190.3 197 46.7
SalBow6G7145 Salvia bowleyana HOM05D006632 ORTHO05D008224 6.2e-46 188.3 136 69.9
Ca_22220_v3 Cicer arietinum L. HOM05D006632 ORTHO05D008224 4.0e-45 185.7 125 72.0
Ca_21955_v3 Cicer arietinum L. HOM05D006632 ORTHO05D008224 1.0e-43 181.0 109 79.8
C01p26240 Brassica napus HOM05D006632 ORTHO05D008224 4.1e-37 159.1 133 60.9
BolC1t02568H Brassica oleracea HOM05D006632 ORTHO05D008224 4.1e-37 159.1 133 60.9
MCO15G182 Micromonas commoda HOM05D006632 ORTHO05D008224 1.3e-35 154.1 199 43.2
PRCOL_00001140 Prasinoderma coloniale HOM05D006632 ORTHO05D008224 2.9e-35 152.9 186 41.4
ATR0564G418 Amborella trichopoda HOM05D006632 ORTHO05D008224 5.5e-34 148.7 148 52.0
Dinv39125 Davidia involucrata HOM05D006632 ORTHO05D008224 6.9e-29 131.7 137 55.5
BraA01t02010Z Brassica rapa HOM05D006632 ORTHO05D008224 1.5e-28 130.6 142 50.7
A01p20910 Brassica napus HOM05D006632 ORTHO05D008224 1.3e-27 127.5 142 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1014 Anthoceros agrestis HOM05D006632 ORTHO05D008224 3.7e-22 109.4 157 43.3
Peaxi162Scf00002g00156 Petunia axillaris HOM05D006632 ORTHO05D008224 6.9e-21 105.1 79 64.6
Duzib068G0053 Durio zibethinus HOM05D006632 ORTHO05D008224 2.2e-19 100.1 54 81.5
Cpa.g.sc276.6 Carica papaya HOM05D006632 ORTHO05D008224 1.8e-16 90.5 102 52.9
FvH4_5g00080 Fragaria vesca HOM05D011292 ORTHO05D013599 7.4e-15 85.1 99 50.5
TAR636G0287 Trochodendron aralioides HOM05D006632 ORTHO05D008224 1.2e-12 77.8 99 49.5
Potri.001G122501 Populus trichocarpa HOM05D006632 ORTHO05D008224 1.1e-10 71.2 97 45.4
Sabra01G0094400 Salix brachista HOM05D006632 ORTHO05D008224 1.9e-10 70.5 45 68.9
DCAR_004944 Daucus carota HOM05D006632 ORTHO05D008224 8.8e-08 61.6 95 43.2


User provided reference genes

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