Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G002530 Cucumis sativus L. HOM05D002756 ORTHO05D002896 4.7e-218 761.1 451 100.0
ClCG10G002500 Citrullus lanatus HOM05D002756 ORTHO05D002896 2.0e-160 569.7 439 80.0
MELO3C013922.2 Cucumis melo HOM05D002756 ORTHO05D002896 5.6e-147 525.0 441 74.1
Sed0017596 Sechium edule HOM05D002756 ORTHO05D002896 5.3e-121 438.7 446 63.5
FvH4_5g19610 Fragaria vesca HOM05D002756 ORTHO05D002896 2.3e-55 220.7 481 41.6
RcHm_v2.0_Chr7g0204301 Rosa chinensis HOM05D002756 ORTHO05D002896 3.3e-54 216.9 483 41.0
Sabra03G0049800 Salix brachista HOM05D002756 ORTHO05D002896 7.3e-54 215.7 466 43.8
FAN04G0448 Fragaria x ananassa HOM05D002756 ORTHO05D002896 1.1e-52 211.8 481 40.7
FAN13G0091 Fragaria x ananassa HOM05D002756 ORTHO05D002896 5.2e-52 209.5 481 41.0
Potri.001G155000 Populus trichocarpa HOM05D002756 ORTHO05D002896 6.8e-52 209.1 471 45.0
FAN08G2407 Fragaria x ananassa HOM05D002756 ORTHO05D002896 1.5e-51 208.0 480 40.8
FAN18G1828 Fragaria x ananassa HOM05D002756 ORTHO05D002896 2.0e-51 207.6 481 40.3
MD04G1061300 Malus domestica HOM05D002756 ORTHO05D002896 9.9e-51 205.3 478 39.5
Manes.02G041900 Manihot esculenta HOM05D002756 ORTHO05D002896 1.7e-50 204.5 480 41.5
QL12p011144 Quercus lobata HOM05D002756 ORTHO05D002896 1.9e-49 201.1 498 42.6
Duzib068G0659 Durio zibethinus HOM05D002756 ORTHO05D002896 2.4e-49 200.7 475 39.4
Prupe.5G064100 Prunus persica HOM05D002756 ORTHO05D002896 2.4e-49 200.7 494 39.3
QL12p010923 Quercus lobata HOM05D002756 ORTHO05D002896 2.4e-49 200.7 498 42.6
Ciclev10019703m.g Citrus clementina HOM05D002756 ORTHO05D002896 9.2e-49 198.7 469 40.3
CSS0004447 Camellia sinensis var. sinensis HOM05D002756 ORTHO05D002896 1.3e-47 194.9 468 42.7
CiPaw.12G049400 Carya illinoinensis HOM05D002756 ORTHO05D002896 8.7e-47 192.2 480 36.5
Duzib084G0904 Durio zibethinus HOM05D002756 ORTHO05D002896 2.5e-46 190.7 467 39.6
Thecc.03G246800 Theobroma cacao HOM05D002756 ORTHO05D002896 1.3e-45 188.3 469 40.3
Duzib205G1850 Durio zibethinus HOM05D002756 ORTHO05D002896 3.6e-45 186.8 467 40.3
Potri.003G079900 Populus trichocarpa HOM05D002756 ORTHO05D002896 1.2e-43 181.8 475 42.3
Cfa012698 Carpinus fangiana HOM05D002756 ORTHO05D002896 1.5e-43 181.4 466 39.5
Sabra01G0124600 Salix brachista HOM05D002756 ORTHO05D002896 4.4e-43 179.9 464 42.7
TAR629G2869 Trochodendron aralioides HOM05D002756 ORTHO05D002896 7.6e-43 179.1 467 38.8
TAR629G0742 Trochodendron aralioides HOM05D002756 ORTHO05D002896 4.9e-42 176.4 480 37.7
CiPaw.11G082800 Carya illinoinensis HOM05D002756 ORTHO05D002896 1.9e-41 174.5 494 36.0
Atru.chr9.1260 Acer truncatum HOM05D002756 ORTHO05D002896 2.1e-40 171.0 476 36.3
Haze_07935 Corylus avellana HOM05D002756 ORTHO05D002896 7.8e-40 169.1 473 37.8
TAR375G0301 Trochodendron aralioides HOM05D002756 ORTHO05D002896 1.1e-38 165.2 460 34.3
Lj4g0006676 Lotus japonicus HOM05D002756 ORTHO05D002896 7.3e-38 162.5 473 35.5
TWI81G0105 Tripterygium wilfordii HOM05D002756 ORTHO05D002896 7.3e-38 162.5 457 35.4
Lalb_Chr05g0221081 Lupinus albus HOM05D002756 ORTHO05D002896 1.6e-37 161.4 506 32.0
Eucgr.E00399 Eucalyptus grandis HOM05D002756 ORTHO05D002896 8.1e-37 159.1 475 37.9
Hma1.2p1_1196F.1_g266030 Hydrangea macrophylla HOM05D002756 ORTHO05D002896 3.1e-36 157.1 453 36.2
Hma1.2p1_1335F.1_g276370 Hydrangea macrophylla HOM05D002756 ORTHO05D002896 3.1e-36 157.1 453 36.2
Nn6g33844 Nelumbo nucifera HOM05D002756 ORTHO05D002896 9.0e-36 155.6 477 36.1
Nitab4.5_0007283g0010 Nicotiana tabacum HOM05D002756 ORTHO05D002896 1.5e-35 154.8 468 36.3
PGR042G1682 Punica granatum HOM05D002756 ORTHO05D002896 2.6e-35 154.1 473 35.5
vmacro00014 Vaccinium macrocarpon HOM05D002756 ORTHO05D002896 3.8e-34 150.2 479 37.4
Cc08_g12030 Coffea canephora HOM05D002756 ORTHO05D002896 1.1e-33 148.7 449 36.1
Dinv39178 Davidia involucrata HOM05D002756 ORTHO05D002896 1.0e-31 142.1 456 36.0
PGSC0003DMG400026237 Solanum tuberosum HOM05D002756 ORTHO05D002896 1.0e-31 142.1 447 36.2
Nn6g33847 Nelumbo nucifera HOM05D002756 ORTHO05D002896 3.9e-31 140.2 476 34.5
Aqoxy3G02766 Aquilegia oxysepala HOM05D002756 ORTHO05D002896 5.1e-31 139.8 460 33.5
Lj8C270T8 Lonicera japonica HOM05D002756 ORTHO05D002896 1.1e-30 138.7 480 36.2
Nitab4.5_0002601g0020 Nicotiana tabacum HOM05D002756 ORTHO05D002896 4.3e-30 136.7 470 36.0
Sopen08g026790 Solanum pennellii HOM05D002756 ORTHO05D002896 4.3e-30 136.7 461 34.3
Solyc08g078290.1 Solanum lycopersicum HOM05D002756 ORTHO05D002896 1.6e-29 134.8 453 34.2
Rhsim11G0050900 Rhododendron simsii HOM05D002756 ORTHO05D002896 2.8e-29 134.0 471 35.0
DCAR_008518 Daucus carota HOM05D002756 ORTHO05D002896 6.2e-29 132.9 462 33.5
Dinv21670 Davidia involucrata HOM05D002756 ORTHO05D002896 3.1e-28 130.6 355 37.5
CANSAT21G1520 Cannabis sativa HOM05D002756 ORTHO05D002896 6.9e-28 129.4 458 31.9
Oeu017053.1 Olea europaea HOM05D002756 ORTHO05D002896 1.5e-27 128.3 460 34.3
CAN.G1178.4 Capsicum annuum HOM05D002756 ORTHO05D002896 2.0e-27 127.9 470 35.5
VMungo0251G0835 Vigna mungo HOM05D002756 ORTHO05D002896 2.6e-27 127.5 535 32.1
GSVIVG01005822001 Vitis vinifera HOM05D002756 ORTHO05D002896 2.6e-27 127.5 441 33.3
AUR62007124 Chenopodium quinoa HOM05D002756 ORTHO05D002896 2.9e-26 124.0 420 31.2
Actinidia14397 Actinidia chinensis HOM05D002756 ORTHO05D002896 4.9e-26 123.2 471 32.1
Ah.12g054420 Amaranthus hybridus HOM05D002756 ORTHO05D002896 1.1e-25 122.1 551 33.6
Peaxi162Scf00346g00062 Petunia axillaris HOM05D002756 ORTHO05D002896 1.4e-25 121.7 477 35.6
Phvul.003G223300 Phaseolus vulgaris HOM05D002756 ORTHO05D002896 1.9e-25 121.3 539 32.7
EL10Ac5g12331 Beta vulgaris HOM05D002756 ORTHO05D002896 3.2e-25 120.6 546 32.8
Sc07g0009180 Simmondsia chinensis HOM05D002756 ORTHO05D002896 9.3e-25 119.0 509 30.5
PSO675G5676 Papaver somniferum HOM05D002756 ORTHO05D002896 6.0e-24 116.3 513 30.6
Lalb_Chr09g0329931 Lupinus albus HOM05D002756 ORTHO05D002896 1.3e-23 115.2 493 28.6
AUR62019993 Chenopodium quinoa HOM05D002756 ORTHO05D002896 3.0e-23 114.0 422 31.5
CSS0042834 Camellia sinensis var. sinensis HOM05D002756 ORTHO05D002896 8.7e-23 112.5 265 39.6
Gohir.A12G214900 Gossypium hirsutum HOM05D002756 ORTHO05D002896 7.4e-22 109.4 450 31.3
PSO732G0525 Papaver somniferum HOM05D002756 ORTHO05D002896 7.4e-22 109.4 501 27.1
HanXRQChr17g0549241 Helianthus annuus HOM05D002756 ORTHO05D002896 1.3e-21 108.6 448 32.4
Gohir.D12G217500 Gossypium hirsutum HOM05D002756 ORTHO05D002896 1.6e-21 108.2 451 31.9
GSVIVG01018249001 Vitis vinifera HOM05D001866 ORTHO05D001915 1.1e-20 105.5 346 32.1
COL.COLO4_37105 Corchorus olitorius HOM05D002756 ORTHO05D002896 2.6e-19 100.9 434 31.8
Gorai.008G233100 Gossypium raimondii HOM05D002756 ORTHO05D002896 3.4e-19 100.5 454 30.8
vmacro22653 Vaccinium macrocarpon HOM05D002756 ORTHO05D002896 4.5e-19 100.1 315 36.8
Actinidia02163 Actinidia chinensis HOM05D002756 ORTHO05D002896 3.8e-18 97.1 476 32.4
arahy.Tifrunner.gnm1.ann1.4S09TY Arachis hypogaea HOM05D002756 ORTHO05D002896 4.2e-17 93.6 439 33.5
Glyma.01G122700 Glycine max HOM05D002756 ORTHO05D002896 1.2e-16 92.0 466 31.8
PSO063G5636 Papaver somniferum HOM05D002756 ORTHO05D002896 7.9e-16 89.4 561 27.5
Ca_21993_v3 Cicer arietinum L. HOM05D002756 ORTHO05D002896 1.9e-14 84.7 450 29.6
arahy.Tifrunner.gnm1.ann1.73EWJC Arachis hypogaea HOM05D002756 ORTHO05D002896 2.5e-14 84.3 439 32.3
MD07G1103700 Malus domestica HOM05D002756 ORTHO05D002896 3.3e-14 84.0 483 29.2
arahy.Tifrunner.gnm1.ann1.X0SKZJ Arachis hypogaea HOM05D002756 ORTHO05D002896 4.3e-14 83.6 440 32.7
TPR.G37630 Trifolium pratense HOM05D002756 ORTHO05D002896 4.3e-14 83.6 459 27.9
arahy.Tifrunner.gnm1.ann1.X9KLSS Arachis hypogaea HOM05D002756 ORTHO05D002896 5.7e-14 83.2 440 31.4
PSO782G0082 Papaver somniferum HOM05D002756 ORTHO05D002896 9.7e-14 82.4 566 28.1
Lalb_Chr16g0386581 Lupinus albus HOM05D002756 ORTHO05D002896 1.3e-13 82.0 219 32.4
Actinidia12652 Actinidia chinensis HOM05D002756 ORTHO05D002896 1.8e-12 78.2 454 29.5
THA.LOC104807911 Tarenaya hassleriana HOM05D002756 ORTHO05D002896 3.1e-12 77.4 458 29.0
SGA_v2.0_scaffold199G41225 Striga asiatica HOM05D002756 ORTHO05D002896 1.2e-11 75.5 446 30.7
Thecc.01G392600 Theobroma cacao HOM05D002756 ORTHO05D002896 4.5e-11 73.6 456 27.0
BolC8t48410H Brassica oleracea HOM05D002756 ORTHO05D002896 5.9e-11 73.2 442 28.7
BcaC07g38020 Brassica carinata HOM05D002756 ORTHO05D002896 7.7e-11 72.8 442 28.7
Dinv44072 Davidia involucrata HOM05D001866 ORTHO05D002896 7.7e-11 72.8 217 37.8
FAN06G1585 Fragaria x ananassa HOM05D002756 ORTHO05D002896 1.7e-10 71.6 454 26.4
FAN06G0867 Fragaria x ananassa HOM05D002756 ORTHO05D008812 2.2e-10 71.2 459 26.6
Gohir.A03G006140 Gossypium hirsutum HOM05D002756 ORTHO05D002896 2.9e-10 70.9 44 79.5
Gorai.003G175800 Gossypium raimondii HOM05D002756 ORTHO05D002896 2.9e-10 70.9 44 79.5
Gohir.D03G166200 Gossypium hirsutum HOM05D002756 ORTHO05D002896 3.8e-10 70.5 44 77.3
FvH4_7g09850 Fragaria vesca HOM05D002756 ORTHO05D002896 6.5e-10 69.7 454 26.2
Medtr4g100530 Medicago truncatula HOM05D002756 ORTHO05D002896 6.5e-10 69.7 455 30.1
TWI59G1099 Tripterygium wilfordii HOM05D002756 ORTHO05D002896 1.1e-09 68.9 196 34.7
BraA01t01971Z Brassica rapa HOM05D002756 ORTHO05D002896 1.4e-09 68.6 441 28.1
Glyma.05G062801 Glycine max HOM05D002756 ORTHO05D002896 1.4e-09 68.6 301 34.2
Cpa.g.sc89.63 Carica papaya HOM05D002756 ORTHO05D002896 1.9e-09 68.2 197 35.5
FAN10G1547 Fragaria x ananassa HOM05D002756 ORTHO05D008812 1.9e-09 68.2 459 26.4
Gorai.003G175700 Gossypium raimondii HOM05D002756 ORTHO05D002896 2.5e-09 67.8 44 75.0
Psat4g073480 Pisum sativum HOM05D002756 ORTHO05D002896 3.2e-09 67.4 454 26.2
Glyma.19G105000 Glycine max HOM05D002756 ORTHO05D002896 4.2e-09 67.0 441 30.6
A01p20420 Brassica napus HOM05D002756 ORTHO05D002896 5.5e-09 66.6 441 27.9
Cpa.g.sc101.27 Carica papaya HOM05D002756 ORTHO05D002896 5.5e-09 66.6 196 34.2
Manes.01G272300 Manihot esculenta HOM05D002756 ORTHO05D002896 9.4e-09 65.9 457 26.0
Peaxi162Scf00190g00123 Petunia axillaris HOM05D002756 ORTHO05D002896 1.2e-08 65.5 313 30.4
MD06G1054900 Malus domestica HOM05D002756 ORTHO05D002896 2.1e-08 64.7 46 73.9
Aa31LG2G12970 Aethionema arabicum HOM05D002756 ORTHO05D002896 2.7e-08 64.3 452 26.8
FAN10G3136 Fragaria x ananassa HOM05D002756 ORTHO05D008812 3.6e-08 63.9 468 26.5
FAN01G1526 Fragaria x ananassa HOM05D002756 ORTHO05D002896 4.6e-08 63.5 471 25.3
Haze_02809 Corylus avellana HOM05D002756 ORTHO05D002896 6.1e-08 63.2 199 32.7
Ciclev10024461m.g Citrus clementina HOM05D001866 ORTHO05D001915 7.9e-08 62.8 316 29.7
Migut.A01149 Erythranthe guttata HOM05D002756 ORTHO05D002896 7.9e-08 62.8 78 46.2
Sp7g17320 Schrenkiella parvula HOM05D002756 ORTHO05D002896 1.0e-07 62.4 449 29.6
Glyma.17G144800 Glycine max HOM05D002756 ORTHO05D002896 1.4e-07 62.0 45 71.1
AL7G37860 Arabidopsis lyrata HOM05D002756 ORTHO05D002896 1.8e-07 61.6 441 26.8
FAN03G0252 Fragaria x ananassa HOM05D002756 ORTHO05D002896 1.8e-07 61.6 432 26.9
BcaC09g50418 Brassica carinata HOM05D002756 ORTHO05D002896 2.3e-07 61.2 450 27.1
AT4G16790 Arabidopsis thaliana HOM05D002756 ORTHO05D002896 3.9e-07 60.5 42 71.4
BolC1t02520H Brassica oleracea HOM05D002756 ORTHO05D002896 3.9e-07 60.5 450 26.4
C01p25660 Brassica napus HOM05D002756 ORTHO05D002896 5.1e-07 60.1 450 26.9
CARHR223410 Cardamine hirsuta HOM05D002756 ORTHO05D002896 6.7e-07 59.7 43 69.8
CDE04G1179 Ceratophyllum demersum HOM05D000033 ORTHO05D002896 6.7e-07 59.7 461 24.1
BcaB04g18397 Brassica carinata HOM05D002756 ORTHO05D002896 1.1e-06 58.9 443 30.5
A08p12710 Brassica napus HOM05D002756 ORTHO05D002896 3.3e-06 57.4 46 69.6
Gorai.N024700 Gossypium raimondii HOM05D002756 ORTHO05D002896 3.3e-06 57.4 129 33.3
MD02G1216600 Malus domestica HOM05D002756 ORTHO05D002896 3.3e-06 57.4 533 26.8
Lj1g0002162 Lotus japonicus HOM05D002756 ORTHO05D002896 4.3e-06 57.0 126 35.7
Prupe.2G127500 Prunus persica HOM05D002756 ORTHO05D002896 4.3e-06 57.0 421 28.7
BcaNung00149 Brassica carinata HOM05D002756 ORTHO05D002896 5.7e-06 56.6 442 27.6
Potri.002G136600 Populus trichocarpa HOM05D002756 ORTHO05D002896 5.7e-06 56.6 510 23.9
BraA08t33260Z Brassica rapa HOM05D002756 ORTHO05D002896 7.4e-06 56.2 443 27.1
CSS0007822 Camellia sinensis var. sinensis HOM05D002756 ORTHO05D002896 7.4e-06 56.2 448 27.9
PGR042G0175 Punica granatum HOM05D002756 ORTHO05D002896 7.4e-06 56.2 172 31.4
SGA_v2.0_scaffold153G36916 Striga asiatica HOM05D002756 ORTHO05D002896 7.4e-06 56.2 435 22.5
HanXRQChr06g0164481 Helianthus annuus HOM05D002756 ORTHO05D002896 9.7e-06 55.8 428 22.2


User provided reference genes

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