Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G002390 Cucumis sativus L. HOM05D006599 ORTHO05D008304 4.1e-147 524.6 250 100.0
MELO3C013909.2 Cucumis melo HOM05D006599 ORTHO05D008304 8.2e-140 500.4 250 94.8
ClCG07G007400 Citrullus lanatus HOM05D006599 ORTHO05D008304 4.0e-134 481.5 250 90.8
Sed0027615 Sechium edule HOM05D006599 ORTHO05D008304 8.8e-126 453.8 250 84.4
TWI34G0408 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 3.5e-114 415.2 250 74.0
QL02p067958 Quercus lobata HOM05D006599 ORTHO05D008304 3.9e-113 411.8 249 75.9
Thecc.04G093300 Theobroma cacao HOM05D006599 ORTHO05D008304 5.6e-112 407.9 250 74.8
COL.COLO4_21402 Corchorus olitorius HOM05D006599 ORTHO05D008304 1.2e-111 406.8 250 74.0
Duzib147G0316 Durio zibethinus HOM05D006599 ORTHO05D008304 3.6e-111 405.2 250 74.8
CSS0025230 Camellia sinensis var. sinensis HOM05D006599 ORTHO05D008304 1.2e-109 400.2 250 73.6
TAR629G1530 Trochodendron aralioides HOM05D006599 ORTHO05D008304 2.0e-109 399.4 248 72.2
Potri.004G119500 Populus trichocarpa HOM05D006599 ORTHO05D008304 4.4e-109 398.3 250 74.0
TWI32G0394 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 1.7e-108 396.4 250 72.0
FvH4_6g47020 Fragaria vesca HOM05D006599 ORTHO05D008304 3.7e-108 395.2 250 72.0
FAN14G4927 Fragaria x ananassa HOM05D006599 ORTHO05D008304 3.7e-108 395.2 250 72.0
Cfa007654 Carpinus fangiana HOM05D006599 ORTHO05D008304 4.9e-108 394.8 250 71.6
Gohir.A11G072300 Gossypium hirsutum HOM05D006599 ORTHO05D008304 6.4e-108 394.4 250 72.8
RcHm_v2.0_Chr2g0166081 Rosa chinensis HOM05D006599 ORTHO05D008304 1.4e-107 393.3 250 72.8
Gohir.D11G076400 Gossypium hirsutum HOM05D006599 ORTHO05D008304 2.4e-107 392.5 250 72.4
Gorai.007G082000 Gossypium raimondii HOM05D006599 ORTHO05D008304 2.4e-107 392.5 250 72.4
FAN09G1977 Fragaria x ananassa HOM05D006599 ORTHO05D008304 5.4e-107 391.3 250 71.2
Nn4g23391 Nelumbo nucifera HOM05D006599 ORTHO05D008304 9.2e-107 390.6 250 70.4
Manes.02G054000 Manihot esculenta HOM05D006599 ORTHO05D008304 1.6e-106 389.8 250 70.0
Potri.017G092800 Populus trichocarpa HOM05D006599 ORTHO05D008304 1.6e-106 389.8 250 72.0
Sabra04G0069000 Salix brachista HOM05D006599 ORTHO05D008304 1.6e-106 389.8 250 72.8
Prupe.3G256500 Prunus persica HOM05D006599 ORTHO05D008304 2.0e-106 389.4 250 72.4
FAN02G1129 Fragaria x ananassa HOM05D006599 ORTHO05D008304 2.7e-106 389.0 250 71.2
GSVIVG01032932001 Vitis vinifera HOM05D006599 ORTHO05D008304 3.5e-106 388.7 250 71.6
Nn3g17418 Nelumbo nucifera HOM05D006599 ORTHO05D008304 4.6e-106 388.3 250 70.0
Hma1.2p1_0481F.1_g162060 Hydrangea macrophylla HOM05D006599 ORTHO05D008304 1.3e-105 386.7 251 70.9
Atru.chr8.423 Acer truncatum HOM05D006599 ORTHO05D008304 2.3e-105 386.0 250 70.8
DCAR_025424 Daucus carota HOM05D006599 ORTHO05D008304 5.0e-105 384.8 250 69.6
Nitab4.5_0010051g0050 Nicotiana tabacum HOM05D006599 ORTHO05D008304 1.1e-104 383.6 251 71.3
Nitab4.5_0000565g0260 Nicotiana tabacum HOM05D006599 ORTHO05D008304 1.5e-104 383.3 251 71.3
Sabra17G0081900 Salix brachista HOM05D006599 ORTHO05D008304 2.5e-104 382.5 250 72.0
Solyc02g088730.2 Solanum lycopersicum HOM05D006599 ORTHO05D008304 2.5e-104 382.5 251 70.1
CiPaw.03G089500 Carya illinoinensis HOM05D006599 ORTHO05D008304 7.3e-104 380.9 250 71.6
Sopen02g033440 Solanum pennellii HOM05D006599 ORTHO05D008304 1.2e-103 380.2 251 70.1
PGSC0003DMG400001449 Solanum tuberosum HOM05D006599 ORTHO05D008304 2.1e-103 379.4 251 69.3
Rhsim08G0074600 Rhododendron simsii HOM05D006599 ORTHO05D008304 6.2e-103 377.9 250 68.8
arahy.Tifrunner.gnm1.ann1.CT2P3Y Arachis hypogaea HOM05D006599 ORTHO05D008304 1.1e-102 377.1 252 69.8
Ca_04338_v3 Cicer arietinum L. HOM05D006599 ORTHO05D008304 1.1e-102 377.1 252 69.4
MD09G1064500 Malus domestica HOM05D006599 ORTHO05D008304 1.1e-102 377.1 250 70.4
Lalb_Chr17g0337021 Lupinus albus HOM05D006599 ORTHO05D008304 1.4e-102 376.7 252 69.8
Peaxi162Scf00166g00058 Petunia axillaris HOM05D006599 ORTHO05D008304 1.4e-102 376.7 251 69.7
arahy.Tifrunner.gnm1.ann1.24WTBT Arachis hypogaea HOM05D006599 ORTHO05D008304 1.8e-102 376.3 252 69.4
MSTRG.23889 Avicennia marina HOM05D006599 ORTHO05D008304 1.8e-102 376.3 250 69.2
CAN.G206.218 Capsicum annuum HOM05D006599 ORTHO05D008304 6.8e-102 374.4 251 68.9
Lsat_1_v5_gn_3_98261 Lactuca sativa HOM05D006599 ORTHO05D008304 2.0e-101 372.9 249 67.5
Gohir.D09G009200 Gossypium hirsutum HOM05D006599 ORTHO05D008304 3.4e-101 372.1 250 70.0
Gorai.006G010900 Gossypium raimondii HOM05D006599 ORTHO05D008304 3.4e-101 372.1 250 70.0
Medtr7g013160 Medicago truncatula HOM05D006599 ORTHO05D008304 4.4e-101 371.7 252 67.9
Cc07_g04100 Coffea canephora HOM05D006599 ORTHO05D008304 7.5e-101 370.9 251 70.1
Migut.H00636 Erythranthe guttata HOM05D006599 ORTHO05D008304 7.5e-101 370.9 250 65.6
CANSAT64G1926 Cannabis sativa HOM05D006599 ORTHO05D008304 9.8e-101 370.5 251 69.7
Psat3g201440 Pisum sativum HOM05D006599 ORTHO05D008304 3.7e-100 368.6 252 65.9
TPR.G33427 Trifolium pratense HOM05D006599 ORTHO05D008304 3.7e-100 368.6 252 67.9
THA.LOC104823890 Tarenaya hassleriana HOM05D006599 ORTHO05D008304 4.9e-100 368.2 249 69.5
Sc14g0006220 Simmondsia chinensis HOM05D006599 ORTHO05D008304 6.4e-100 367.9 250 68.4
Lj1g0001712 Lotus japonicus HOM05D006599 ORTHO05D008304 8.3e-100 367.5 252 67.5
Aqoxy3G00501 Aquilegia oxysepala HOM05D006599 ORTHO05D008304 1.9e-99 366.3 250 66.8
HanXRQChr17g0546571 Helianthus annuus HOM05D006599 ORTHO05D008304 2.4e-99 365.9 250 68.0
VMungo1383G0637 Vigna mungo HOM05D006599 ORTHO05D008304 2.4e-99 365.9 252 68.3
Gohir.A09G010100 Gossypium hirsutum HOM05D006599 ORTHO05D008304 4.1e-99 365.2 250 69.2
Ciclev10012597m.g Citrus clementina HOM05D006599 ORTHO05D008304 2.7e-98 362.5 250 70.0
Glyma.18G265500 Glycine max HOM05D006599 ORTHO05D008304 4.6e-98 361.7 252 67.1
Phvul.008G034600 Phaseolus vulgaris HOM05D006599 ORTHO05D008304 6.0e-98 361.3 252 67.5
Aa31LG9G16680 Aethionema arabicum HOM05D006599 ORTHO05D008304 1.7e-97 359.8 249 65.9
PGR083G1582 Punica granatum HOM05D006599 ORTHO05D008304 2.3e-97 359.4 250 66.0
Thhalv10027896m.g Eutrema salsugineum HOM05D006599 ORTHO05D008304 5.1e-97 358.2 249 66.3
ECA232G1145 Erigeron canadensis HOM05D006599 ORTHO05D008304 6.6e-97 357.8 250 65.6
Oeu047780.1 Olea europaea HOM05D006599 ORTHO05D008304 8.6e-97 357.5 250 67.2
Thecc.04G093200 Theobroma cacao HOM05D006599 ORTHO05D008304 2.5e-96 355.9 250 68.0
AT5G39250 Arabidopsis thaliana HOM05D006599 ORTHO05D008304 3.3e-96 355.5 250 66.4
HanXRQChr17g0551751 Helianthus annuus HOM05D006599 ORTHO05D008304 3.3e-96 355.5 250 65.6
A04p11970 Brassica napus HOM05D006599 ORTHO05D008304 1.2e-95 353.6 252 63.9
C04p45620 Brassica napus HOM05D006599 ORTHO05D008304 1.2e-95 353.6 252 63.9
BolC4t26144H Brassica oleracea HOM05D006599 ORTHO05D008304 1.2e-95 353.6 252 63.9
BraA04t16862Z Brassica rapa HOM05D006599 ORTHO05D008304 1.2e-95 353.6 252 63.9
SGA_v2.0_scaffold52G19170 Striga asiatica HOM05D006599 ORTHO05D008304 2.8e-95 352.4 248 66.1
CARHR263160 Cardamine hirsuta HOM05D006599 ORTHO05D008304 3.6e-95 352.1 252 63.9
BcaC02g09687 Brassica carinata HOM05D006599 ORTHO05D008304 4.7e-95 351.7 252 63.5
Oeu035439.1 Olea europaea HOM05D006599 ORTHO05D008304 8.1e-95 350.9 250 66.4
AL7G51210 Arabidopsis lyrata HOM05D006599 ORTHO05D008304 3.1e-94 349.0 249 65.1
Sp7g02740 Schrenkiella parvula HOM05D006599 ORTHO05D008304 3.1e-94 349.0 249 63.5
Carub.0007s3667 Capsella rubella HOM05D006599 ORTHO05D008304 6.8e-94 347.8 252 63.5
BcaB06g27283 Brassica carinata HOM05D006599 ORTHO05D008304 1.2e-93 347.1 252 63.1
AUR62029230 Chenopodium quinoa HOM05D006599 ORTHO05D008304 3.4e-93 345.5 245 66.1
Eucgr.J01379 Eucalyptus grandis HOM05D006599 ORTHO05D008304 1.1e-91 340.5 250 62.4
PSO017G0459 Papaver somniferum HOM05D006599 ORTHO05D008304 1.1e-91 340.5 247 63.6
AUR62022778 Chenopodium quinoa HOM05D006599 ORTHO05D008304 1.4e-91 340.1 245 65.7
PSO478G2235 Papaver somniferum HOM05D006599 ORTHO05D008304 7.1e-91 337.8 248 63.7
Manes.01G097300 Manihot esculenta HOM05D006599 ORTHO05D008304 7.8e-90 334.3 228 68.4
Glyma.08G243300 Glycine max HOM05D006599 ORTHO05D008304 2.5e-88 329.3 262 61.1
unitig_744.g23984 Utricularia gibba HOM05D006599 ORTHO05D008304 1.5e-85 320.1 250 59.2
Peaxi162Scf00451g00012 Petunia axillaris HOM05D006599 ORTHO05D008304 5.8e-85 318.2 238 63.4
ATR0064G081 Amborella trichopoda HOM05D006599 ORTHO05D008304 2.4e-83 312.8 246 58.5
Haze_14439 Corylus avellana HOM05D006599 ORTHO05D008304 9.3e-83 310.8 203 69.5
CDE10G0620 Ceratophyllum demersum HOM05D006599 ORTHO05D008304 9.6e-80 300.8 237 57.8
SHI25645 Sapria himalayana HOM05D006599 ORTHO05D008304 2.8e-79 299.3 245 57.6
HPP92_009527 Vanilla planifolia HOM05D006599 ORTHO05D008304 1.3e-76 290.4 247 56.3
HPP92_009554 Vanilla planifolia HOM05D006599 ORTHO05D008304 3.8e-76 288.9 247 55.9
Os03g0423000 Oryza sativa ssp. japonica HOM05D006599 ORTHO05D008304 6.7e-73 278.1 248 52.8
Zm00001eb020180 Zea mays HOM05D006599 ORTHO05D008304 1.9e-72 276.6 249 53.4
Pp3c13_10960 Physcomitrium patens HOM05D006599 ORTHO05D008304 1.3e-63 247.3 250 48.8
Mapoly0038s0100 Marchantia polymorpha HOM05D006599 ORTHO05D008304 5.8e-61 238.4 249 44.6
FAN05G2816 Fragaria x ananassa HOM05D006599 ORTHO05D008304 5.5e-59 231.9 153 66.0
SMO347G0158 Selaginella moellendorffii HOM05D006599 ORTHO05D008304 3.7e-55 219.2 267 41.9
Dinv34953 Davidia involucrata HOM05D006599 ORTHO05D008304 4.5e-53 212.2 135 74.1
Peaxi162Scf00451g00005 Petunia axillaris HOM05D006599 ORTHO05D008304 6.1e-50 201.8 286 44.1
Lsat_1_v5_gn_7_2780 Lactuca sativa HOM05D006599 ORTHO05D008304 1.8e-49 200.3 259 45.9
Lj4E117T1 Lonicera japonica HOM05D006599 ORTHO05D008304 7.7e-45 184.9 111 73.0
Dinv33823 Davidia involucrata HOM05D006599 ORTHO05D008304 3.6e-42 176.0 99 83.8
Lalb_Chr10g0093051 Lupinus albus HOM05D006599 ORTHO05D008304 2.0e-32 143.7 95 68.4
PGSC0003DMG400031200 Solanum tuberosum HOM05D006599 ORTHO05D008304 1.1e-22 111.3 90 62.2
EL10Ac9g22551 Beta vulgaris HOM05D006599 ORTHO05D008304 2.4e-22 110.2 72 62.5
Lalb_Chr10g0093041 Lupinus albus HOM05D006599 ORTHO05D008304 1.0e-20 104.8 55 78.2
MD17G1057800 Malus domestica HOM05D006599 ORTHO05D008304 4.0e-17 92.8 49 73.5
Peaxi162Scf00270g00422 Petunia axillaris HOM05D006599 ORTHO05D008304 5.7e-16 89.0 153 39.9
TPR.G10380 Trifolium pratense HOM05D006599 ORTHO05D008304 4.1e-14 82.8 45 77.8
Mapoly0033s0071 Marchantia polymorpha HOM05D006599 ORTHO05D008304 2.6e-08 63.5 142 28.2
Sabra16G0305200 Salix brachista HOM05D001305 ORTHO05D007147 1.1e-06 58.2 134 29.1
Eucgr.K01581 Eucalyptus grandis HOM05D007529 ORTHO05D007451 1.4e-06 57.8 98 37.8


User provided reference genes

Program Settings