Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G002380 Cucumis sativus L. HOM05D003010 ORTHO05D003623 7.6e-63 243.8 136 100.0
MELO3C013908.2 Cucumis melo HOM05D003010 ORTHO05D003623 6.2e-33 144.4 92 89.1
ClCG00G004980 Citrullus lanatus HOM05D003010 ORTHO05D003623 2.9e-30 135.6 89 83.1
ClCG10G002350 Citrullus lanatus HOM05D003010 ORTHO05D003623 2.9e-30 135.6 89 83.1
Sed0000436 Sechium edule HOM05D003010 ORTHO05D003623 4.8e-17 91.7 90 64.4
Nn6g33810 Nelumbo nucifera HOM05D003010 ORTHO05D003623 5.7e-10 68.2 88 42.0
Duzib205G1418 Durio zibethinus HOM05D003010 ORTHO05D003623 1.3e-09 67.0 88 50.0
COL.COLO4_21678 Corchorus olitorius HOM05D003010 ORTHO05D003623 4.8e-09 65.1 88 50.0
Thecc.03G243800 Theobroma cacao HOM05D003010 ORTHO05D003623 1.4e-08 63.5 87 46.0
CiPaw.11G070300 Carya illinoinensis HOM05D003010 ORTHO05D003623 4.1e-08 62.0 89 42.7
FAN04G3127 Fragaria x ananassa HOM05D003010 ORTHO05D003623 4.1e-08 62.0 47 55.3
FAN18G3981 Fragaria x ananassa HOM05D003010 ORTHO05D003623 4.1e-08 62.0 47 55.3
Nn1g00825 Nelumbo nucifera HOM05D003010 ORTHO05D003623 4.1e-08 62.0 91 38.5
Medtr1g090200 Medicago truncatula HOM05D003010 ORTHO05D003623 5.3e-08 61.6 88 43.2
FAN08G3583 Fragaria x ananassa HOM05D003010 ORTHO05D003623 9.1e-08 60.8 64 45.3
Gohir.D03G167000 Gossypium hirsutum HOM05D003010 ORTHO05D003623 1.2e-07 60.5 88 45.5
Ca_10413_v3 Cicer arietinum L. HOM05D003010 ORTHO05D000523 1.5e-07 60.1 89 42.7
Haze_07981 Corylus avellana HOM05D003010 ORTHO05D003623 2.0e-07 59.7 97 39.2
Gohir.A03G005500 Gossypium hirsutum HOM05D003010 ORTHO05D003623 2.6e-07 59.3 88 44.3
Gorai.003G176600 Gossypium raimondii HOM05D003010 ORTHO05D003623 3.4e-07 58.9 88 44.3
Gorai.004G194100 Gossypium raimondii HOM05D003010 ORTHO05D003623 3.4e-07 58.9 88 47.7
MD07G1247700 Malus domestica HOM05D003010 ORTHO05D003623 3.4e-07 58.9 88 42.0
Dinv21689 Davidia involucrata HOM05D003010 ORTHO05D003623 7.7e-07 57.8 88 46.6
Atru.chr9.1234 Acer truncatum HOM05D003010 ORTHO05D003623 1.0e-06 57.4 69 44.9
Gohir.D08G184800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 1.0e-06 57.4 88 44.3
CAN.G761.23 Capsicum annuum HOM05D003010 ORTHO05D003623 1.3e-06 57.0 87 47.1
Prupe.5G059800 Prunus persica HOM05D003010 ORTHO05D003623 1.3e-06 57.0 87 39.1
SalBow3G0012 Salvia bowleyana HOM05D003010 ORTHO05D003623 1.3e-06 57.0 91 40.7
SalBow3G1605 Salvia bowleyana HOM05D003010 ORTHO05D003623 1.3e-06 57.0 91 40.7
Solyc08g078060.3 Solanum lycopersicum HOM05D003010 ORTHO05D003623 1.3e-06 57.0 87 46.0
Actinidia02185 Actinidia chinensis HOM05D003010 ORTHO05D003623 1.7e-06 56.6 88 40.9
Gohir.A08G165900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 1.7e-06 56.6 88 45.5
Dinv28854 Davidia involucrata HOM05D003010 ORTHO05D003623 2.2e-06 56.2 87 43.7
FvH4_5g20070 Fragaria vesca HOM05D003010 ORTHO05D003623 2.2e-06 56.2 45 53.3
FAN13G2988 Fragaria x ananassa HOM05D003010 ORTHO05D003623 2.2e-06 56.2 45 53.3
TWI81G0439 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 2.2e-06 56.2 88 44.3
GSVIVG01013867001 Vitis vinifera HOM05D003010 ORTHO05D003623 2.2e-06 56.2 61 47.5
Atru.chr1.925 Acer truncatum HOM05D003010 ORTHO05D003623 2.9e-06 55.8 88 40.9
EL10Ac5g12296 Beta vulgaris HOM05D003010 ORTHO05D003623 2.9e-06 55.8 87 37.9
MD06G1049300 Malus domestica HOM05D003010 ORTHO05D003623 2.9e-06 55.8 92 40.2
Manes.02G043601 Manihot esculenta HOM05D003010 ORTHO05D003623 2.9e-06 55.8 71 40.8
TAR629G3508 Trochodendron aralioides HOM05D003010 ORTHO05D003623 2.9e-06 55.8 87 42.5
MD04G1050500 Malus domestica HOM05D003010 ORTHO05D003623 3.8e-06 55.5 90 40.0
RcHm_v2.0_Chr7g0204931 Rosa chinensis HOM05D003010 ORTHO05D003623 3.8e-06 55.5 45 53.3
Sc01g0008150 Simmondsia chinensis HOM05D003010 ORTHO05D003623 3.8e-06 55.5 87 41.4
CiPaw.07G184100 Carya illinoinensis HOM05D003010 ORTHO05D003623 6.5e-06 54.7 89 40.4
Thhalv10017475m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 6.5e-06 54.7 96 37.5
Actinidia25899 Actinidia chinensis HOM05D003010 ORTHO05D003623 8.5e-06 54.3 94 40.4
PGR042G0596 Punica granatum HOM05D003010 ORTHO05D003623 8.5e-06 54.3 98 41.8
TPR.G31425 Trifolium pratense HOM05D003010 ORTHO05D003623 8.5e-06 54.3 50 44.0
GSVIVG01007344001 Vitis vinifera HOM05D003010 ORTHO05D003623 8.5e-06 54.3 98 35.7


User provided reference genes

Program Settings