Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 8.2e-85 317.4 207 100.0
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 4.1e-68 261.9 207 88.9
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 2.2e-66 256.1 207 84.5
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 3.4e-54 215.7 211 73.9
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 1.3e-37 160.6 142 62.7
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 2.2e-37 159.8 143 62.2
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 2.9e-37 159.5 206 52.9
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 8.3e-37 157.9 138 63.8
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 1.2e-35 154.1 207 55.1
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 4.6e-35 152.1 143 60.1
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 1.3e-34 150.6 143 62.2
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 1.3e-34 150.6 140 61.4
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 1.3e-34 150.6 145 63.4
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 1.7e-34 150.2 145 59.3
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 5.0e-34 148.7 143 61.5
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 8.6e-34 147.9 144 56.2
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 8.6e-34 147.9 145 62.8
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 4.3e-33 145.6 144 56.9
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.6e-32 143.7 144 56.2
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 1.6e-32 143.7 142 58.5
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.1e-32 143.3 143 57.3
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 2.1e-32 143.3 142 58.5
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 2.8e-32 142.9 146 58.2
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.8e-32 142.9 143 57.3
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 2.8e-32 142.9 164 54.3
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 2.8e-32 142.9 141 60.3
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 6.2e-32 141.7 134 59.7
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 6.2e-32 141.7 144 56.2
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 6.2e-32 141.7 144 55.6
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 8.0e-32 141.4 139 58.3
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 1.1e-31 141.0 144 57.6
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 1.4e-31 140.6 144 58.3
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 1.8e-31 140.2 145 56.6
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 3.1e-31 139.4 139 57.6
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 5.2e-31 138.7 146 58.2
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 8.9e-31 137.9 142 54.2
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 8.9e-31 137.9 133 59.4
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 1.2e-30 137.5 121 62.0
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 1.2e-30 137.5 140 59.3
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 1.5e-30 137.1 134 59.0
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 2.0e-30 136.7 141 54.6
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 2.0e-30 136.7 142 55.6
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 5.8e-30 135.2 136 55.9
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 7.5e-30 134.8 134 61.2
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 9.8e-30 134.4 142 57.0
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 9.8e-30 134.4 145 54.5
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.7e-29 133.7 134 57.5
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 2.2e-29 133.3 149 54.4
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 2.9e-29 132.9 138 58.7
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 3.7e-29 132.5 142 54.9
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 4.9e-29 132.1 133 57.1
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 4.9e-29 132.1 121 61.2
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 4.9e-29 132.1 143 58.0
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 6.4e-29 131.7 133 55.6
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.1e-28 131.0 142 55.6
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 1.1e-28 131.0 146 54.1
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 1.4e-28 130.6 123 57.7
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 1.4e-28 130.6 143 53.8
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 1.4e-28 130.6 141 55.3
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.9e-28 130.2 141 55.3
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 2.4e-28 129.8 133 55.6
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 2.4e-28 129.8 132 58.3
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 5.4e-28 128.6 141 53.2
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 7.0e-28 128.3 132 55.3
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 7.0e-28 128.3 141 55.3
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 7.0e-28 128.3 141 56.7
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 1.6e-27 127.1 149 51.0
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 2.1e-27 126.7 130 56.9
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 2.1e-27 126.7 130 58.5
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 2.1e-27 126.7 125 56.8
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 2.7e-27 126.3 145 51.0
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 4.6e-27 125.6 137 53.3
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 4.6e-27 125.6 142 54.2
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 7.8e-27 124.8 149 49.7
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 7.8e-27 124.8 141 56.0
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 1.0e-26 124.4 146 51.4
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 6.6e-26 121.7 140 55.0
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 1.1e-25 120.9 141 52.5
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 1.5e-25 120.6 126 54.0
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 1.5e-25 120.6 196 49.0
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 1.9e-25 120.2 145 50.3
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 1.9e-25 120.2 141 53.9
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.5e-25 119.8 139 51.1
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 3.3e-25 119.4 141 53.2
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 4.3e-25 119.0 141 50.4
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 1.2e-24 117.5 146 50.0
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 1.6e-24 117.1 142 52.8
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 1.6e-24 117.1 152 49.3
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 2.1e-24 116.7 141 52.5
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 2.8e-24 116.3 146 50.0
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 4.7e-24 115.5 146 49.3
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 1.1e-23 114.4 146 49.3
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 1.4e-23 114.0 137 51.1
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 1.8e-23 113.6 102 58.8
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 2.3e-23 113.2 85 67.1
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 3.1e-23 112.8 150 48.7
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 3.1e-23 112.8 116 56.9
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 6.8e-23 111.7 143 48.3
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 6.8e-23 111.7 146 51.4
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 6.8e-23 111.7 150 48.0
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.5e-22 110.5 140 48.6
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 3.4e-22 109.4 146 46.6
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 1.3e-21 107.5 147 44.9
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 3.7e-21 105.9 136 49.3
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 4.9e-21 105.5 135 51.9
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 1.1e-20 104.4 123 51.2
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 1.1e-20 104.4 123 51.2
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 1.1e-20 104.4 123 51.2
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 4.1e-20 102.4 97 57.7
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 4.1e-20 102.4 97 57.7
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 5.4e-20 102.1 135 51.1
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 5.4e-20 102.1 82 63.4
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 7.1e-20 101.7 128 49.2
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 7.1e-20 101.7 142 46.5
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 9.2e-20 101.3 99 58.6
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 1.2e-19 100.9 74 64.9
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 2.1e-19 100.1 82 63.4
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 2.1e-19 100.1 82 63.4
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 4.6e-19 99.0 85 57.6
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 4.6e-19 99.0 123 48.0
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 4.6e-19 99.0 123 48.0
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 4.6e-19 99.0 138 47.1
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 6.0e-19 98.6 131 47.3
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 6.0e-19 98.6 72 65.3
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 6.0e-19 98.6 142 45.1
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 1.3e-18 97.4 123 49.6
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 2.3e-18 96.7 142 45.1
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 2.3e-18 96.7 142 45.1
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 1.5e-17 94.0 125 47.2
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 1.5e-17 94.0 125 47.2
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 5.6e-17 92.0 192 38.0
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 9.5e-17 91.3 126 48.4
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 2.8e-16 89.7 91 56.0
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 4.7e-16 89.0 121 45.5
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 6.2e-16 88.6 148 41.9
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.4e-15 87.4 63 63.5
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 4.4e-14 82.4 64 64.1
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 7.6e-14 81.6 131 38.2
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 2.2e-13 80.1 60 65.0
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 4.9e-13 79.0 125 44.8
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 2.4e-12 76.6 152 40.8
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 1.6e-11 73.9 74 50.0
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 4.6e-11 72.4 58 62.1
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.3e-10 70.9 47 74.5
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 3.0e-10 69.7 140 40.7
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.5e-09 67.4 61 54.1
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 1.2e-08 64.3 123 41.5
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 1.2e-08 64.3 98 42.9
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 1.1e-07 61.2 85 42.4
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.1e-07 61.2 46 63.0
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 4.0e-07 59.3 61 47.5


User provided reference genes

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