Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G002190 Cucumis sativus L. HOM05D006103 ORTHO05D007468 3.2e-174 615.1 344 100.0
MELO3C013891.2 Cucumis melo HOM05D006103 ORTHO05D007468 1.3e-159 566.6 351 92.3
ClCG10G002100 Citrullus lanatus HOM05D006103 ORTHO05D007468 7.8e-157 557.4 343 90.4
Sed0003222 Sechium edule HOM05D006103 ORTHO05D007468 9.0e-145 517.3 344 86.9
CiPaw.11G084400 Carya illinoinensis HOM05D006103 ORTHO05D007468 3.6e-109 399.1 333 72.1
Haze_08348 Corylus avellana HOM05D006103 ORTHO05D007468 1.7e-106 390.2 332 72.9
RcHm_v2.0_Chr7g0206421 Rosa chinensis HOM05D006103 ORTHO05D007468 1.5e-104 383.6 334 69.5
FvH4_5g20690 Fragaria vesca HOM05D006103 ORTHO05D007468 3.4e-104 382.5 335 69.0
FAN18G2558 Fragaria x ananassa HOM05D006103 ORTHO05D007468 3.4e-104 382.5 335 69.3
Prupe.5G053300 Prunus persica HOM05D006103 ORTHO05D007468 7.7e-104 381.3 335 68.1
FAN04G1103 Fragaria x ananassa HOM05D006103 ORTHO05D007468 1.7e-103 380.2 335 66.9
PGR042G3635 Punica granatum HOM05D006103 ORTHO05D007468 1.7e-103 380.2 349 69.3
FAN08G0488 Fragaria x ananassa HOM05D006103 ORTHO05D007468 2.2e-103 379.8 335 66.9
TAR375G0262 Trochodendron aralioides HOM05D006103 ORTHO05D007468 3.8e-103 379.0 334 68.3
Dinv25153 Davidia involucrata HOM05D006103 ORTHO05D007468 1.9e-102 376.7 331 67.4
MD04G1054200 Malus domestica HOM05D006103 ORTHO05D007468 4.2e-102 375.6 342 66.7
FAN13G0941 Fragaria x ananassa HOM05D006103 ORTHO05D007468 7.2e-102 374.8 335 67.2
QL12p008443 Quercus lobata HOM05D006103 ORTHO05D007468 2.7e-101 372.9 332 66.6
Eucgr.E00334 Eucalyptus grandis HOM05D006103 ORTHO05D007468 6.1e-101 371.7 346 65.9
arahy.Tifrunner.gnm1.ann1.GKQN4T Arachis hypogaea HOM05D006103 ORTHO05D007468 1.0e-100 370.9 343 68.2
CANSAT21G0053 Cannabis sativa HOM05D006103 ORTHO05D007468 1.5e-99 367.1 326 66.6
Thecc.03G237900 Theobroma cacao HOM05D006103 ORTHO05D007468 5.7e-99 365.2 335 68.7
Gorai.004G191100 Gossypium raimondii HOM05D006103 ORTHO05D007468 1.7e-98 363.6 333 67.9
Gohir.D08G182200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 6.3e-98 361.7 333 67.6
Duzib205G0801 Durio zibethinus HOM05D006103 ORTHO05D007468 3.1e-97 359.4 330 66.4
Potri.001G149800 Populus trichocarpa HOM05D006103 ORTHO05D007468 7.0e-97 358.2 328 64.9
CSS0016826 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 1.2e-96 357.5 340 62.9
Sabra01G0119800 Salix brachista HOM05D006103 ORTHO05D007468 1.2e-96 357.5 338 63.9
Manes.17G024600 Manihot esculenta HOM05D006103 ORTHO05D007468 2.6e-96 356.3 329 62.6
MBI04_g46823_MAGBIO Magnolia biondii HOM05D006103 ORTHO05D007468 5.9e-96 355.1 328 61.6
TWI60G1123 Tripterygium wilfordii HOM05D006103 ORTHO05D007468 1.7e-95 353.6 333 63.1
VMungo0251G0880 Vigna mungo HOM05D006103 ORTHO05D007468 1.7e-95 353.6 333 67.6
Cc08_g11160 Coffea canephora HOM05D006103 ORTHO05D007468 2.2e-95 353.2 326 65.3
Gohir.A08G162200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 2.2e-95 353.2 333 64.9
Glyma.05G067000 Glycine max HOM05D006103 ORTHO05D007468 6.5e-95 351.7 344 65.1
DCAR_004514 Daucus carota HOM05D006103 ORTHO05D007468 8.5e-95 351.3 344 64.2
Ciclev10021261m.g Citrus clementina HOM05D006103 ORTHO05D007468 1.1e-94 350.9 330 63.6
MSTRG.13771 Avicennia marina HOM05D006103 ORTHO05D007468 1.5e-94 350.5 338 60.1
Phvul.003G226000 Phaseolus vulgaris HOM05D006103 ORTHO05D007468 5.5e-94 348.6 333 63.7
Cpa.g.sc98.70 Carica papaya HOM05D006103 ORTHO05D007468 7.2e-94 348.2 349 57.6
CSS0027189 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 1.2e-93 347.4 340 63.8
Lj8A286T53 Lonicera japonica HOM05D006103 ORTHO05D007468 2.7e-93 346.3 333 63.7
Lalb_Chr16g0386381 Lupinus albus HOM05D006103 ORTHO05D007468 2.7e-93 346.3 333 63.1
Nitab4.5_0000506g0180 Nicotiana tabacum HOM05D006103 ORTHO05D007468 4.7e-93 345.5 341 63.9
Atru.chr9.1156 Acer truncatum HOM05D006103 ORTHO05D007468 8.0e-93 344.7 330 59.4
Actinidia03414 Actinidia chinensis HOM05D006103 ORTHO05D007468 1.8e-92 343.6 334 64.4
CAN.G422.12 Capsicum annuum HOM05D006103 ORTHO05D007468 2.3e-92 343.2 340 64.4
Lj4g0004061 Lotus japonicus HOM05D006103 ORTHO05D007468 4.0e-92 342.4 335 62.4
Solyc06g060990.4 Solanum lycopersicum HOM05D006103 ORTHO05D007468 4.4e-91 339.0 338 64.5
Sopen06g021130 Solanum pennellii HOM05D006103 ORTHO05D007468 9.7e-91 337.8 336 61.9
Lj8C280G0 Lonicera japonica HOM05D006103 ORTHO05D007468 1.3e-90 337.4 330 56.4
Aqoxy3G02600 Aquilegia oxysepala HOM05D006103 ORTHO05D007468 2.2e-90 336.7 332 62.3
Oeu054287.1 Olea europaea HOM05D006103 ORTHO05D007468 4.8e-90 335.5 331 62.5
PGSC0003DMG400026583 Solanum tuberosum HOM05D006103 ORTHO05D007468 6.3e-90 335.1 331 63.4
PSO063G5173 Papaver somniferum HOM05D006103 ORTHO05D007468 5.3e-89 332.0 342 60.5
Lsat_1_v5_gn_6_94780 Lactuca sativa HOM05D006103 ORTHO05D007468 7.0e-89 331.6 325 61.8
Sp2g11900 Schrenkiella parvula HOM05D006103 ORTHO05D007468 5.9e-88 328.6 329 61.1
SGA_v2.0_scaffold20G09256 Striga asiatica HOM05D006103 ORTHO05D007468 1.7e-87 327.0 333 58.9
CDE02G1890 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 2.2e-87 326.6 337 53.4
Thhalv10000969m.g Eutrema salsugineum HOM05D006103 ORTHO05D007468 6.5e-87 325.1 325 58.5
Carub.0008s0066 Capsella rubella HOM05D006103 ORTHO05D007468 8.5e-87 324.7 335 61.2
Ca_22022_v3 Cicer arietinum L. HOM05D006103 ORTHO05D007468 8.5e-87 324.7 340 53.5
BraA02t08094Z Brassica rapa HOM05D006103 ORTHO05D007468 2.1e-85 320.1 329 60.2
AUR62007192 Chenopodium quinoa HOM05D006103 ORTHO05D007468 2.7e-85 319.7 340 52.6
A02p30800 Brassica napus HOM05D006103 ORTHO05D007468 2.3e-84 316.6 329 59.6
AL8G11110 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 4.0e-84 315.8 344 57.8
C02p48360 Brassica napus HOM05D006103 ORTHO05D007468 4.0e-84 315.8 325 60.0
BolC2t10867H Brassica oleracea HOM05D006103 ORTHO05D007468 4.0e-84 315.8 325 60.0
unitig_699.g19773 Utricularia gibba HOM05D006103 ORTHO05D007468 5.2e-84 315.5 338 58.6
BcaC03g16934 Brassica carinata HOM05D006103 ORTHO05D007468 8.8e-84 314.7 329 59.6
GSVIVG01013285001 Vitis vinifera HOM05D006103 ORTHO05D007468 7.5e-83 311.6 184 82.1
CARHR174300 Cardamine hirsuta HOM05D006103 ORTHO05D007468 1.7e-82 310.5 335 51.9
HanXRQChr03g0089621 Helianthus annuus HOM05D006103 ORTHO05D007468 2.2e-82 310.1 328 56.4
vmacro00388 Vaccinium macrocarpon HOM05D006103 ORTHO05D007468 2.8e-82 309.7 398 46.7
Medtr4g099190 Medicago truncatula HOM05D006103 ORTHO05D007468 6.3e-82 308.5 333 57.4
AT5G47090 Arabidopsis thaliana HOM05D006103 ORTHO05D007468 1.1e-81 307.8 329 52.6
C02p28550 Brassica napus HOM05D006103 ORTHO05D007468 2.0e-80 303.5 329 52.9
BolC2t08897H Brassica oleracea HOM05D006103 ORTHO05D007468 2.0e-80 303.5 329 52.9
BcaC03g15262 Brassica carinata HOM05D006103 ORTHO05D007468 1.7e-79 300.4 329 52.6
Dinv28889 Davidia involucrata HOM05D006103 ORTHO05D007468 2.9e-79 299.7 193 77.2
EL10Ac5g12236 Beta vulgaris HOM05D006103 ORTHO05D007468 9.4e-78 294.7 340 57.6
ATR0665G401 Amborella trichopoda HOM05D006103 ORTHO05D007468 1.2e-77 294.3 337 58.2
Migut.E01036 Erythranthe guttata HOM05D006103 ORTHO05D007468 1.2e-77 294.3 332 48.8
Migut.E01310 Erythranthe guttata HOM05D006103 ORTHO05D007468 1.2e-77 294.3 332 48.8
Sc22g0001160 Simmondsia chinensis HOM05D006103 ORTHO05D007468 1.2e-77 294.3 187 76.5
CANSAT21G0160 Cannabis sativa HOM05D001479 ORTHO05D007468 4.7e-77 292.4 190 76.3
Aa31LG9G5870 Aethionema arabicum HOM05D006103 ORTHO05D007468 6.1e-77 292.0 355 56.9
Hund11307 Selenicereus undatus HOM05D006103 ORTHO05D007468 8.0e-77 291.6 283 63.6
SHI07660 Sapria himalayana HOM05D006103 ORTHO05D007468 5.2e-76 288.9 327 50.2
CANSAT21G1035 Cannabis sativa HOM05D006103 ORTHO05D007468 6.8e-76 288.5 188 76.1
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.3e-74 284.3 306 54.6
Peaxi162Scf00190g00616 Petunia axillaris HOM05D006103 ORTHO05D007468 2.2e-74 283.5 281 67.3
CDE11G0859 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 1.2e-72 277.7 282 55.0
SEGI_16450 Sequoiadendron giganteum HOM05D006103 ORTHO05D007468 1.2e-72 277.7 326 56.7
Zm00001eb377550 Zea mays HOM05D006103 ORTHO05D007468 3.5e-72 276.2 342 50.9
Os06g0139700 Oryza sativa ssp. japonica HOM05D006103 ORTHO05D007468 5.9e-72 275.4 332 51.2
Psat4g074520 Pisum sativum HOM05D006103 ORTHO05D007468 1.5e-70 270.8 333 48.3
Rhsim04G0176100 Rhododendron simsii HOM05D006103 ORTHO05D007468 4.7e-69 265.8 286 56.3
TPR.G25737 Trifolium pratense HOM05D006103 ORTHO05D007468 4.9e-66 255.8 335 52.2
BcaC07g39778 Brassica carinata HOM05D006103 ORTHO05D007468 2.7e-64 250.0 329 53.8
Pp3c16_2730 Physcomitrium patens HOM05D006103 ORTHO05D007468 1.2e-61 241.1 342 50.6
Nitab4.5_0013289g0030 Nicotiana tabacum HOM05D006103 ORTHO05D007468 1.4e-60 237.7 254 62.6
HPP92_014398 Vanilla planifolia HOM05D006103 ORTHO05D007468 2.4e-57 226.9 190 57.9
Hma1.2p1_1672F.1_g296810 Hydrangea macrophylla HOM05D006103 ORTHO05D007468 4.6e-56 222.6 223 61.4
BolC8t50609H Brassica oleracea HOM05D006103 ORTHO05D007468 1.2e-51 208.0 150 68.7
SMO171G0121 Selaginella moellendorffii HOM05D006103 ORTHO05D007468 4.1e-49 199.5 348 39.1
AUR62018811 Chenopodium quinoa HOM05D006103 ORTHO05D007468 5.1e-47 192.6 226 50.0
C08p30000 Brassica napus HOM05D006103 ORTHO05D007468 4.3e-46 189.5 136 69.1
AagrBONN_evm.TU.Sc2ySwM_368.2081 Anthoceros agrestis HOM05D006103 ORTHO05D007468 2.1e-45 187.2 326 40.5
Lj8A284T15 Lonicera japonica HOM05D006103 ORTHO05D007468 2.1e-45 187.2 137 66.4
CBR_g49667 Chara braunii HOM05D006103 ORTHO05D007468 4.3e-38 162.9 412 36.9
SHI06573 Sapria himalayana HOM05D006103 ORTHO05D007468 5.8e-27 125.9 123 56.1
Actinidia02205 Actinidia chinensis HOM05D006103 ORTHO05D007468 9.3e-25 118.6 77 76.6
AL8G11000 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 1.6e-24 117.9 176 54.0
MCO11G792 Micromonas commoda HOM05D006103 ORTHO05D007468 3.0e-23 113.6 355 29.0
Cfa012348 Carpinus fangiana HOM05D006103 ORTHO05D007468 7.4e-22 109.0 85 68.2
RcHm_v2.0_Chr4g0446321 Rosa chinensis HOM05D006103 ORTHO05D007468 2.8e-21 107.1 75 73.3
Lj8A284T12 Lonicera japonica HOM05D006103 ORTHO05D007468 1.7e-18 97.8 133 45.1
RcHm_v2.0_Chr6g0308851 Rosa chinensis HOM05D006103 ORTHO05D007468 8.4e-18 95.5 54 88.9
COL.COLO4_06694 Corchorus olitorius HOM05D006103 ORTHO05D007468 4.2e-17 93.2 71 66.2
Lj8C284T4 Lonicera japonica HOM05D006103 ORTHO05D007468 3.0e-15 87.0 55 69.1
Cre03.g170100 Chlamydomonas reinhardtii HOM05D006103 ORTHO05D007468 1.5e-14 84.7 150 35.3
SHI06574 Sapria himalayana HOM05D006103 ORTHO05D007468 7.4e-14 82.4 170 35.9
Actinidia25920 Actinidia chinensis HOM05D006103 ORTHO05D007468 1.4e-12 78.2 83 53.0
CARHR174410 Cardamine hirsuta HOM05D006103 ORTHO05D007468 1.8e-12 77.8 44 79.5
Carub.0008s0069 Capsella rubella HOM05D006103 ORTHO05D007468 7.6e-11 72.4 54 70.4
Rhsim04G0176300 Rhododendron simsii HOM05D006103 ORTHO05D007468 1.9e-09 67.8 66 53.0
Lj8A280T20 Lonicera japonica HOM05D006103 ORTHO05D007468 2.3e-07 60.8 40 77.5
Ah.07g199910 Amaranthus hybridus HOM05D006103 ORTHO05D007468 8.7e-07 58.9 62 48.4
RcHm_v2.0_Chr6g0308841 Rosa chinensis HOM05D006103 ORTHO05D007468 9.6e-06 55.5 30 83.3


User provided reference genes

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