Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G002130 Cucumis sativus L. HOM05D006116 ORTHO05D007795 9.5e-237 823.2 430 100.0
MELO3C013885.2 Cucumis melo HOM05D006116 ORTHO05D007795 1.7e-222 775.8 430 94.2
ClCG10G002040 Citrullus lanatus HOM05D006116 ORTHO05D007795 7.9e-215 750.4 428 92.1
ClCG00G004790 Citrullus lanatus HOM05D006116 ORTHO05D007795 6.3e-196 687.6 428 86.9
vmacro00376 Vaccinium macrocarpon HOM05D006116 ORTHO05D007795 2.2e-172 609.4 441 68.3
Rhsim11G0056500 Rhododendron simsii HOM05D006116 ORTHO05D007795 2.9e-169 599.0 439 68.1
COL.COLO4_06703 Corchorus olitorius HOM05D006116 ORTHO05D007795 1.2e-167 593.6 443 65.9
Sed0023369 Sechium edule HOM05D006116 ORTHO05D007795 1.2e-167 593.6 430 77.4
Actinidia03408 Actinidia chinensis HOM05D006116 ORTHO05D007795 4.0e-166 588.6 435 68.0
Prupe.5G050800 Prunus persica HOM05D006116 ORTHO05D007795 5.2e-166 588.2 438 66.0
GSVIVG01013271001 Vitis vinifera HOM05D006116 ORTHO05D007795 8.8e-166 587.4 445 72.1
CSS0043999 Camellia sinensis var. sinensis HOM05D006116 ORTHO05D007795 7.5e-165 584.3 445 66.7
PGR042G3339 Punica granatum HOM05D006116 ORTHO05D007795 7.5e-165 584.3 453 66.0
CiPaw.11G085600 Carya illinoinensis HOM05D006116 ORTHO05D007795 2.4e-163 579.3 442 71.5
Nitab4.5_0006135g0020 Nicotiana tabacum HOM05D006116 ORTHO05D007795 5.3e-163 578.2 437 65.4
FAN18G3779 Fragaria x ananassa HOM05D006116 ORTHO05D007795 7.0e-163 577.8 437 65.2
CSS0034154 Camellia sinensis var. sinensis HOM05D006116 ORTHO05D007795 1.2e-162 577.0 437 67.5
MD04G1057000 Malus domestica HOM05D006116 ORTHO05D007795 1.6e-162 576.6 441 66.7
Duzib205G0680 Durio zibethinus HOM05D006116 ORTHO05D007795 3.5e-162 575.5 439 69.9
Hma1.2p1_0414F.1_g147510 Hydrangea macrophylla HOM05D006116 ORTHO05D007795 4.5e-162 575.1 436 69.3
Thecc.03G237000 Theobroma cacao HOM05D006116 ORTHO05D007795 4.5e-162 575.1 440 70.9
FAN08G3374 Fragaria x ananassa HOM05D006116 ORTHO05D007795 5.9e-162 574.7 437 65.2
Ciclev10020221m.g Citrus clementina HOM05D006116 ORTHO05D007795 7.7e-162 574.3 434 65.0
CANSAT21G1244 Cannabis sativa HOM05D006116 ORTHO05D007795 1.0e-161 573.9 463 64.6
FvH4_5g20810 Fragaria vesca HOM05D006116 ORTHO05D007795 1.7e-161 573.2 437 64.8
Potri.003G085600 Populus trichocarpa HOM05D006116 ORTHO05D007795 6.5e-161 571.2 435 70.3
FAN04G0705 Fragaria x ananassa HOM05D006116 ORTHO05D007795 8.5e-161 570.9 437 64.8
QL12p007972 Quercus lobata HOM05D006116 ORTHO05D007795 1.1e-160 570.5 456 70.2
RcHm_v2.0_Chr7g0207741 Rosa chinensis HOM05D006116 ORTHO05D007795 2.5e-160 569.3 444 69.8
Nitab4.5_0001255g0040 Nicotiana tabacum HOM05D006116 ORTHO05D007795 3.2e-160 568.9 439 64.9
CAN.G1445.8 Capsicum annuum HOM05D006116 ORTHO05D007795 4.2e-160 568.5 434 65.7
PGSC0003DMG400001856 Solanum tuberosum HOM05D006116 ORTHO05D007795 7.2e-160 567.8 434 64.3
Gorai.008G230000 Gossypium raimondii HOM05D006116 ORTHO05D007795 6.1e-159 564.7 443 65.5
Sopen08g026090 Solanum pennellii HOM05D006116 ORTHO05D007795 1.4e-158 563.5 446 63.9
Lalb_Chr05g0220761 Lupinus albus HOM05D006116 ORTHO05D007795 8.8e-158 560.8 440 65.7
Solyc08g077510.4 Solanum lycopersicum HOM05D006116 ORTHO05D007795 1.2e-157 560.5 434 63.8
THA.LOC104813328 Tarenaya hassleriana HOM05D006116 ORTHO05D007795 2.6e-157 559.3 430 65.3
TPR.G11192 Trifolium pratense HOM05D006116 ORTHO05D007795 3.4e-157 558.9 445 69.4
Gohir.A12G211900 Gossypium hirsutum HOM05D006116 ORTHO05D007795 2.2e-156 556.2 441 64.6
Glyma.17G150200 Glycine max HOM05D006116 ORTHO05D007795 2.8e-156 555.8 428 66.8
Nn1g00701 Nelumbo nucifera HOM05D006116 ORTHO05D007795 1.4e-155 553.5 444 67.3
BolC7t45369H Brassica oleracea HOM05D006116 ORTHO05D007795 3.1e-155 552.4 437 65.2
Cc08_g01540 Coffea canephora HOM05D006116 ORTHO05D007795 1.2e-154 550.4 443 65.5
Lj4g0012718 Lotus japonicus HOM05D006116 ORTHO05D007795 1.2e-154 550.4 432 64.6
Oeu020145.1 Olea europaea HOM05D006116 ORTHO05D007795 2.0e-154 549.7 448 62.9
C07p48610 Brassica napus HOM05D006116 ORTHO05D007795 4.5e-154 548.5 437 64.8
Eucgr.E00329 Eucalyptus grandis HOM05D006116 ORTHO05D007795 4.5e-154 548.5 451 67.8
Ca_22031_v3 Cicer arietinum L. HOM05D006116 ORTHO05D007795 2.3e-153 546.2 450 62.7
HanXRQChr03g0087311 Helianthus annuus HOM05D006116 ORTHO05D007795 2.9e-153 545.8 448 63.2
arahy.Tifrunner.gnm1.ann1.L13TYF Arachis hypogaea HOM05D006116 ORTHO05D007795 3.8e-153 545.4 451 63.4
TWI60G0034 Tripterygium wilfordii HOM05D006116 ORTHO05D007795 3.8e-153 545.4 436 68.3
arahy.Tifrunner.gnm1.ann1.F87Z6X Arachis hypogaea HOM05D006116 ORTHO05D007795 8.6e-153 544.3 450 63.1
Medtr4g099100 Medicago truncatula HOM05D006116 ORTHO05D007795 2.5e-152 542.7 446 66.6
Peaxi162Scf00084g00117 Petunia axillaris HOM05D006116 ORTHO05D007795 2.1e-151 539.7 441 61.9
DCAR_008310 Daucus carota HOM05D006116 ORTHO05D007795 3.0e-150 535.8 457 64.3
CARHR223700 Cardamine hirsuta HOM05D006116 ORTHO05D007795 4.0e-150 535.4 437 65.2
Aqoxy7G00869 Aquilegia oxysepala HOM05D006116 ORTHO05D007795 8.9e-150 534.3 432 66.4
VMungo0251G0386 Vigna mungo HOM05D006116 ORTHO05D007795 8.9e-150 534.3 449 61.0
Phvul.003G227000 Phaseolus vulgaris HOM05D006116 ORTHO05D007795 1.5e-149 533.5 437 62.7
A03p50320 Brassica napus HOM05D006116 ORTHO05D007795 2.0e-149 533.1 435 66.7
BraA03t14121Z Brassica rapa HOM05D006116 ORTHO05D007795 7.5e-149 531.2 434 66.4
ECA240G2524 Erigeron canadensis HOM05D006116 ORTHO05D007795 9.8e-149 530.8 428 62.1
Gohir.D12G214400 Gossypium hirsutum HOM05D006116 ORTHO05D007795 2.8e-148 529.3 303 82.2
Ah.12g053810 Amaranthus hybridus HOM05D006116 ORTHO05D007795 4.9e-148 528.5 435 62.1
Migut.E00901 Erythranthe guttata HOM05D006116 ORTHO05D007795 2.4e-147 526.2 305 80.7
PSO732G0356 Papaver somniferum HOM05D006116 ORTHO05D007795 4.5e-146 521.9 448 61.6
MSTRG.1960 Avicennia marina HOM05D006116 ORTHO05D007795 5.9e-146 521.5 431 62.6
AL7G37600 Arabidopsis lyrata HOM05D006116 ORTHO05D007795 1.0e-145 520.8 433 62.8
Aa31LG2G13210 Aethionema arabicum HOM05D006116 ORTHO05D007795 2.3e-145 519.6 409 64.8
Carub.0007s2428 Capsella rubella HOM05D006116 ORTHO05D007795 3.3e-144 515.8 301 81.1
Lj8A287G22 Lonicera japonica HOM05D006116 ORTHO05D007795 3.3e-144 515.8 314 76.4
Hund14464 Selenicereus undatus HOM05D006116 ORTHO05D007795 3.6e-143 512.3 445 60.0
PSO675G1792 Papaver somniferum HOM05D006116 ORTHO05D007795 1.8e-142 510.0 440 60.7
Sp7g17070 Schrenkiella parvula HOM05D006116 ORTHO05D007795 3.1e-142 509.2 435 64.8
Manes.17G019700 Manihot esculenta HOM05D006116 ORTHO05D007795 5.2e-142 508.4 438 60.5
Thhalv10025290m.g Eutrema salsugineum HOM05D006116 ORTHO05D007795 2.6e-141 506.1 446 62.1
Sc07g0009020 Simmondsia chinensis HOM05D006116 ORTHO05D007795 2.6e-141 506.1 444 62.4
Lsat_1_v5_gn_6_88480 Lactuca sativa HOM05D006116 ORTHO05D007795 1.7e-140 503.4 440 60.0
Lalb_Chr09g0329681 Lupinus albus HOM05D006116 ORTHO05D007795 2.2e-140 503.1 312 75.6
unitig_21.g20374 Utricularia gibba HOM05D006116 ORTHO05D007795 2.2e-140 503.1 429 60.8
Os04g0542900 Oryza sativa ssp. japonica HOM05D006116 ORTHO05D007795 6.6e-137 491.5 461 61.2
EL10Ac5g12218 Beta vulgaris HOM05D006116 ORTHO05D007795 2.5e-136 489.6 505 53.7
AUR62018802 Chenopodium quinoa HOM05D006116 ORTHO05D007795 2.3e-134 483.0 405 64.4
SGA_v2.0_scaffold20G09247 Striga asiatica HOM05D006116 ORTHO05D007795 6.8e-134 481.5 479 55.7
AUR62007200 Chenopodium quinoa HOM05D006116 ORTHO05D007795 4.4e-133 478.8 302 73.8
Zm00001eb075030 Zea mays HOM05D006116 ORTHO05D007795 1.1e-131 474.2 476 57.8
ATR0829G115 Amborella trichopoda HOM05D006116 ORTHO05D007795 1.3e-129 467.2 448 56.9
TAR375G0725 Trochodendron aralioides HOM05D006116 ORTHO05D007795 2.5e-120 436.4 386 64.2
SEGI_40490 Sequoiadendron giganteum HOM05D006116 ORTHO05D007795 3.3e-120 436.0 293 70.6
HPP92_020688 Vanilla planifolia HOM05D006116 ORTHO05D007795 2.4e-118 429.9 439 53.8
TAR375G0708 Trochodendron aralioides HOM05D006116 ORTHO05D007795 5.1e-113 412.1 370 63.8
CiPaw.12G058000 Carya illinoinensis HOM05D006116 ORTHO05D007795 4.3e-112 409.1 232 81.0
Pp3c14_16100 Physcomitrium patens HOM05D006116 ORTHO05D007795 7.6e-109 398.3 312 60.3
Pp3c14_16101 Physcomitrium patens HOM05D006116 ORTHO05D007795 7.6e-109 398.3 312 60.3
AagrBONN_evm.TU.Sc2ySwM_368.518 Anthoceros agrestis HOM05D006116 ORTHO05D007795 1.4e-107 394.0 443 48.8
Psat4g077320 Pisum sativum HOM05D006116 ORTHO05D007795 3.2e-107 392.9 355 59.4
Migut.E00812 Erythranthe guttata HOM05D006116 ORTHO05D007795 5.4e-107 392.1 218 83.9
BcaC06g33529 Brassica carinata HOM05D006116 ORTHO05D007795 7.1e-107 391.7 352 63.9
SMO356G0030 Selaginella moellendorffii HOM05D006116 ORTHO05D007795 2.7e-106 389.8 301 61.8
Mapoly0141s0023 Marchantia polymorpha HOM05D006116 ORTHO05D007795 1.0e-105 387.9 311 60.1
Haze_08334 Corylus avellana HOM05D006116 ORTHO05D007795 4.8e-103 379.0 346 65.9
Zm00001eb313880 Zea mays HOM05D006116 ORTHO05D007795 4.8e-103 379.0 269 66.2
Pp3c2_10960 Physcomitrium patens HOM05D006116 ORTHO05D007795 8.1e-103 378.3 296 61.1
FAN13G0371 Fragaria x ananassa HOM05D006116 ORTHO05D007795 3.4e-101 372.9 334 57.8
Zm00001eb091650 Zea mays HOM05D006116 ORTHO05D007795 1.3e-97 360.9 307 57.0
Zm00001eb319310 Zea mays HOM05D006116 ORTHO05D007795 3.7e-87 326.2 201 75.6
CBR_g27781 Chara braunii HOM05D006116 ORTHO05D007795 8.2e-71 271.9 269 48.7
Zm00001eb129530 Zea mays HOM05D006116 ORTHO05D007795 1.8e-70 270.8 208 61.1
Zm00001eb391960 Zea mays HOM05D006116 ORTHO05D007795 1.8e-70 270.8 208 61.1
Dinv28896 Davidia involucrata HOM05D006116 ORTHO05D007795 4.4e-64 249.6 158 75.3
Cre14.g631900 Chlamydomonas reinhardtii HOM05D006116 ORTHO05D007795 9.7e-64 248.4 278 43.2
Atru.chr9.1147 Acer truncatum HOM05D006116 ORTHO05D007795 2.5e-59 233.8 118 88.1
Zm00001eb268110 Zea mays HOM05D006116 ORTHO05D007795 1.7e-47 194.5 199 49.7
PSO732G0385 Papaver somniferum HOM05D006116 ORTHO05D007795 9.1e-46 188.7 253 47.8
Ca_20974_v3 Cicer arietinum L. HOM05D006116 ORTHO05D007795 7.0e-38 162.5 121 66.1
Zm00001eb276710 Zea mays HOM05D006116 ORTHO05D007795 2.3e-36 157.5 134 54.5
EL10Ac5g12217 Beta vulgaris HOM05D006116 ORTHO05D007795 1.2e-29 135.2 78 74.4
TAR375G0859 Trochodendron aralioides HOM05D006116 ORTHO05D007795 2.0e-29 134.4 69 88.4
Lsat_1_v5_gn_7_9401 Lactuca sativa HOM05D006116 ORTHO05D000290 3.9e-28 130.2 112 55.4
DCAR_005654 Daucus carota HOM05D006116 ORTHO05D007795 4.9e-23 113.2 68 75.0
CAN.G507.3 Capsicum annuum HOM05D006116 ORTHO05D007795 1.2e-21 108.6 76 64.5
CDE11G0087 Ceratophyllum demersum HOM05D006116 ORTHO05D007795 1.8e-17 94.7 53 79.2
TAR375G0706 Trochodendron aralioides HOM05D006116 ORTHO05D009946 3.5e-13 80.5 62 56.5
Aqoxy6G01690 Aquilegia oxysepala HOM05D006116 ORTHO05D007795 3.6e-10 70.5 120 30.8
CiPaw.12G058200 Carya illinoinensis HOM05D006116 ORTHO05D007795 9.9e-08 62.4 95 47.4
Aqoxy7G03532 Aquilegia oxysepala HOM05D006116 ORTHO05D007795 1.3e-07 62.0 59 44.1
BolC8t48435H Brassica oleracea HOM05D006116 ORTHO05D007795 4.1e-06 57.0 39 59.0


User provided reference genes

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