Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G001720 Cucumis sativus L. HOM05D006292 ORTHO05D006110 1.1e-51 206.5 111 100.0
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 2.7e-42 175.3 110 79.1
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 4.8e-39 164.5 114 71.9
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 1.7e-20 102.8 116 56.0
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 1.1e-11 73.6 114 45.6
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 2.5e-11 72.4 121 43.0
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 4.2e-11 71.6 116 44.0
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 5.5e-11 71.2 122 40.2
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 5.5e-11 71.2 124 41.1
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 9.4e-11 70.5 120 42.5
CANSAT21G1416 Cannabis sativa HOM05D006292 ORTHO05D006110 1.2e-10 70.1 112 43.8
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 1.2e-10 70.1 113 46.0
Psat4g118000 Pisum sativum HOM05D006292 ORTHO05D006110 2.1e-10 69.3 108 43.5
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 2.7e-10 68.9 120 41.7
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 3.6e-10 68.6 120 39.2
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 3.6e-10 68.6 120 43.3
Lj4g0026533 Lotus japonicus HOM05D006292 ORTHO05D006110 6.1e-10 67.8 112 41.1
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 6.1e-10 67.8 118 38.1
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 1.0e-09 67.0 122 41.0
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 1.0e-09 67.0 120 39.2
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 1.4e-09 66.6 125 40.0
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.4e-09 66.6 125 40.0
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 1.8e-09 66.2 112 41.1
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 2.3e-09 65.9 125 41.6
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 2.3e-09 65.9 120 40.0
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 3.0e-09 65.5 115 40.9
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 3.0e-09 65.5 115 40.9
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 3.0e-09 65.5 112 42.0
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 3.9e-09 65.1 115 42.6
Sed0013806 Sechium edule HOM05D011808 ORTHO05D006110 3.9e-09 65.1 112 39.3
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 5.1e-09 64.7 118 37.3
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 5.1e-09 64.7 113 41.6
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 6.7e-09 64.3 115 45.2
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 6.7e-09 64.3 112 42.9
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 6.7e-09 64.3 119 40.3
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 1.1e-08 63.5 108 43.5
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 1.5e-08 63.2 115 44.3
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.9e-08 62.8 118 37.3
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 3.3e-08 62.0 111 37.8
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 3.3e-08 62.0 114 39.5
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 3.3e-08 62.0 118 41.5
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 4.3e-08 61.6 118 38.1
Sopen08g025520 Solanum pennellii HOM05D006292 ORTHO05D006110 4.3e-08 61.6 112 39.3
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 5.7e-08 61.2 125 38.4
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 5.7e-08 61.2 121 34.7
AUR62007293 Chenopodium quinoa HOM05D043215 ORTHO05D006110 5.7e-08 61.2 130 36.9
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 1.3e-07 60.1 117 40.2
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 1.3e-07 60.1 115 36.5
Medtr8g067270 Medicago truncatula HOM05D006292 ORTHO05D006110 1.7e-07 59.7 108 37.0
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 2.2e-07 59.3 115 39.1
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 2.2e-07 59.3 119 38.7
Peaxi162Scf00460g00032 Petunia axillaris HOM05D006292 ORTHO05D006110 2.2e-07 59.3 111 36.0
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 2.8e-07 58.9 115 37.4
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 2.8e-07 58.9 127 34.6
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 2.8e-07 58.9 113 41.6
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 3.7e-07 58.5 115 40.0
Solyc08g076940.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 3.7e-07 58.5 112 38.4
TPR.G28248 Trifolium pratense HOM05D006292 ORTHO05D006110 3.7e-07 58.5 109 40.4
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 4.8e-07 58.2 111 34.2
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 6.3e-07 57.8 111 35.1
MELO3C003411.2 Cucumis melo HOM05D011808 ORTHO05D006110 6.3e-07 57.8 110 36.4
vmacro00329 Vaccinium macrocarpon HOM05D006292 ORTHO05D006110 8.2e-07 57.4 113 38.1
Thhalv10001070m.g Eutrema salsugineum HOM05D011808 ORTHO05D006110 1.4e-06 56.6 131 37.4
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 1.8e-06 56.2 124 34.7
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 1.8e-06 56.2 119 39.5
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 3.1e-06 55.5 140 33.6
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 3.1e-06 55.5 119 39.5
Sp2g11580 Schrenkiella parvula HOM05D011808 ORTHO05D006110 4.1e-06 55.1 120 34.2
SpUn0036_0030 Schrenkiella parvula HOM05D011808 ORTHO05D006110 4.1e-06 55.1 120 34.2
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 5.3e-06 54.7 119 38.7
Sc01g0007420 Simmondsia chinensis HOM05D006292 ORTHO05D006110 5.3e-06 54.7 124 37.1
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 6.9e-06 54.3 109 37.6
A02p30310 Brassica napus HOM05D011808 ORTHO05D006110 6.9e-06 54.3 131 36.6
BraA02t08046Z Brassica rapa HOM05D011808 ORTHO05D006110 6.9e-06 54.3 131 36.6
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 6.9e-06 54.3 120 34.2
Sopen06g021400 Solanum pennellii HOM05D006292 ORTHO05D006110 6.9e-06 54.3 119 37.8


User provided reference genes

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