Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 6.8e-117 424.1 226 100.0
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 1.4e-106 389.8 227 93.8
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 9.2e-106 387.1 228 92.1
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 2.7e-65 252.7 230 69.1
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 2.2e-51 206.5 242 52.9
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 5.0e-51 205.3 234 56.0
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 5.0e-51 205.3 234 56.0
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 1.2e-49 200.7 230 56.5
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 1.0e-48 197.6 235 53.2
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 1.5e-47 193.7 243 54.3
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 1.9e-47 193.4 243 54.3
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 4.3e-47 192.2 242 53.7
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 5.7e-47 191.8 236 55.1
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 1.6e-46 190.3 243 52.7
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.7e-46 189.1 226 50.9
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 4.8e-46 188.7 234 54.7
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 8.2e-46 188.0 243 51.9
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 8.2e-46 188.0 243 51.9
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 1.8e-45 186.8 236 52.1
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 1.8e-45 186.8 238 55.5
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.1e-45 186.0 234 54.7
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 3.1e-45 186.0 237 52.3
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 4.1e-45 185.7 233 51.9
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 5.3e-45 185.3 238 54.2
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 6.9e-45 184.9 237 51.1
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 2.0e-44 183.3 241 53.9
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 4.5e-44 182.2 232 54.3
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 1.0e-43 181.0 251 52.2
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.3e-43 180.6 238 45.4
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 1.3e-43 180.6 234 54.7
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 3.8e-43 179.1 241 44.8
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 5.0e-43 178.7 245 53.1
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 5.0e-43 178.7 238 45.0
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.0e-43 178.7 226 50.0
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 5.0e-43 178.7 226 50.0
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 8.5e-43 177.9 249 51.0
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 1.4e-42 177.2 238 44.5
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 1.9e-42 176.8 242 51.2
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.2e-42 176.0 229 49.3
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 5.5e-42 175.3 239 53.6
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 7.2e-42 174.9 213 49.8
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 9.4e-42 174.5 244 48.0
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 1.2e-41 174.1 232 49.1
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.2e-41 174.1 241 44.8
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.6e-41 173.7 236 50.8
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 1.6e-41 173.7 227 49.3
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 6.1e-41 171.8 246 50.0
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 7.9e-41 171.4 232 47.8
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 7.9e-41 171.4 242 46.3
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 2.3e-40 169.9 231 52.4
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.9e-40 169.1 223 46.2
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 3.9e-40 169.1 247 48.2
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 3.9e-40 169.1 249 50.2
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 6.7e-40 168.3 227 46.3
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 6.7e-40 168.3 235 45.1
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 8.8e-40 167.9 249 49.4
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 1.5e-39 167.2 234 48.7
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.5e-39 167.2 229 48.0
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 2.0e-39 166.8 233 52.4
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 3.3e-39 166.0 232 50.9
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 4.3e-39 165.6 236 50.0
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 5.7e-39 165.2 227 48.9
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 5.7e-39 165.2 229 45.4
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 5.7e-39 165.2 237 48.5
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 5.7e-39 165.2 241 48.1
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.7e-38 163.7 233 43.3
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 8.2e-38 161.4 226 51.3
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 8.2e-38 161.4 256 45.7
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.4e-37 160.6 214 50.0
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 1.4e-37 160.6 241 50.2
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 4.1e-37 159.1 243 46.9
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 1.2e-36 157.5 234 45.3
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.2e-36 157.5 229 45.0
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.5e-36 157.1 249 46.6
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 1.5e-36 157.1 230 48.3
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 5.9e-36 155.2 252 46.0
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.7e-35 153.7 229 45.4
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 1.7e-35 153.7 219 50.7
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 2.9e-35 152.9 246 45.1
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.8e-35 152.5 233 47.6
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 8.5e-35 151.4 230 48.7
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 1.1e-34 151.0 222 45.5
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 2.5e-34 149.8 232 46.6
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.2e-34 149.4 162 56.8
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 4.2e-34 149.1 271 45.4
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 5.5e-34 148.7 232 45.3
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 3.0e-32 142.9 235 37.4
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 3.9e-32 142.5 207 48.8
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 1.1e-31 141.0 232 43.1
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 2.6e-31 139.8 232 39.7
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 5.7e-31 138.7 205 54.1
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 2.2e-30 136.7 232 43.1
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 4.8e-30 135.6 229 39.3
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.4e-29 134.0 237 40.1
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 1.2e-28 131.0 230 43.5
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 1.2e-28 131.0 264 43.2
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 1.2e-28 131.0 232 38.8
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 1.0e-27 127.9 245 42.0
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 8.5e-27 124.8 233 42.1
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 1.1e-26 124.4 230 39.1
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 1.1e-26 124.4 230 39.1
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 2.5e-26 123.2 261 42.9
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 3.2e-26 122.9 230 38.7
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 3.2e-26 122.9 219 39.3
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 4.2e-26 122.5 236 44.5
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 7.2e-26 121.7 235 37.0
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 9.4e-26 121.3 230 37.4
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 9.4e-26 121.3 226 36.3
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.1e-25 120.2 235 39.6
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 2.1e-25 120.2 226 43.4
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 2.1e-25 120.2 226 43.4
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 2.1e-25 120.2 231 35.9
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 3.6e-25 119.4 226 40.3
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 3.6e-25 119.4 237 37.1
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.0e-24 117.9 234 35.5
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 2.3e-24 116.7 234 42.3
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 3.0e-24 116.3 224 40.6
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 3.0e-24 116.3 224 40.6
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 3.0e-24 116.3 224 40.6
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 4.0e-24 115.9 229 37.1
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 4.0e-24 115.9 249 40.2
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 4.4e-23 112.5 232 37.5
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 4.4e-23 112.5 232 37.5
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 3.7e-22 109.4 226 35.4
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 1.1e-21 107.8 225 35.1
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 9.1e-21 104.8 233 33.0
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 9.1e-21 104.8 209 39.7
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 1.6e-20 104.0 236 35.6
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.5e-20 102.4 218 35.3
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.7e-19 100.5 159 48.4
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 4.2e-18 95.9 228 33.8
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 2.1e-17 93.6 223 34.1
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 1.0e-16 91.3 219 32.9
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 4.0e-16 89.4 213 38.0
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 2.0e-15 87.0 245 29.8
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 4.4e-15 85.9 152 41.4
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.3e-14 84.3 225 32.0
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.3e-14 84.3 201 36.3
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.7e-14 84.0 207 37.7
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 2.2e-14 83.6 146 41.8
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 2.8e-14 83.2 132 40.9
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 3.7e-14 82.8 93 46.2
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 3.7e-14 82.8 179 34.6
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.1e-13 81.3 116 50.9
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 1.8e-13 80.5 302 29.1
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 4.1e-13 79.3 131 40.5
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 3.8e-11 72.8 121 42.1
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 8.5e-11 71.6 235 33.2
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 1.0e-08 64.7 90 45.6
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 8.8e-08 61.6 155 32.9
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 2.8e-06 56.6 206 32.0
Zm00001eb072350 Zea mays HOM05D004742 ORTHO05D005677 3.7e-06 56.2 92 44.6
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 6.3e-06 55.5 163 30.7
AUR62007299 Chenopodium quinoa HOM05D004742 ORTHO05D005677 8.3e-06 55.1 130 37.7


User provided reference genes

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