Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 6.5e-120 434.1 223 100.0
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 6.3e-107 391.0 223 89.7
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 5.2e-93 344.7 221 77.8
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 8.8e-93 344.0 222 76.6
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 1.5e-92 343.2 222 76.6
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 1.7e-91 339.7 221 78.7
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 8.2e-91 337.4 222 77.5
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 9.1e-90 334.0 221 77.4
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 5.9e-89 331.3 222 77.0
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 6.5e-88 327.8 221 76.0
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 8.5e-88 327.4 221 76.0
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 8.5e-88 327.4 223 74.0
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 1.1e-87 327.0 223 74.9
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 2.5e-87 325.9 244 70.5
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 5.5e-87 324.7 224 73.7
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 5.5e-87 324.7 217 75.1
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 9.4e-87 323.9 210 75.2
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 9.4e-87 323.9 221 75.6
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 9.4e-87 323.9 204 79.4
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.2e-86 323.6 217 75.1
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 1.6e-86 323.2 214 75.7
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 2.1e-86 322.8 224 73.2
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 2.7e-86 322.4 225 73.8
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 3.6e-86 322.0 220 75.0
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 3.6e-86 322.0 222 75.2
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 6.1e-86 321.2 221 74.7
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 6.1e-86 321.2 223 73.5
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 8.0e-86 320.9 221 74.2
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 1.0e-85 320.5 221 75.6
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 1.4e-85 320.1 214 72.0
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 1.4e-85 320.1 207 78.7
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.4e-85 320.1 225 73.8
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 1.4e-85 320.1 224 72.3
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 1.8e-85 319.7 225 73.3
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 2.3e-85 319.3 214 74.8
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 4.0e-85 318.5 204 78.4
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 4.0e-85 318.5 227 72.7
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 4.0e-85 318.5 221 75.6
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 5.2e-85 318.2 224 71.4
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 8.8e-85 317.4 220 72.7
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 1.2e-84 317.0 224 71.4
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 1.5e-84 316.6 224 71.4
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 2.0e-84 316.2 224 71.9
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 2.6e-84 315.8 208 75.5
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 3.4e-84 315.5 224 72.8
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 3.4e-84 315.5 224 72.3
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 4.4e-84 315.1 225 73.3
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 4.4e-84 315.1 224 71.4
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 5.7e-84 314.7 224 71.0
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 1.7e-83 313.2 229 69.0
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.2e-83 312.8 221 74.2
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.2e-83 312.8 221 73.3
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 2.2e-83 312.8 223 71.3
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 2.8e-83 312.4 221 73.8
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 4.8e-83 311.6 224 70.5
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 8.3e-83 310.8 224 70.5
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 8.3e-83 310.8 219 73.5
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 8.3e-83 310.8 225 71.1
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.1e-82 310.5 220 73.2
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 1.1e-82 310.5 224 71.4
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 1.1e-82 310.5 224 71.9
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 1.8e-82 309.7 224 70.1
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 1.8e-82 309.7 224 70.1
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 1.8e-82 309.7 224 69.6
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 1.8e-82 309.7 219 72.6
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 5.4e-82 308.1 219 70.8
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 5.4e-82 308.1 217 72.8
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 7.0e-82 307.8 231 69.7
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 1.6e-81 306.6 220 73.2
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.6e-81 306.6 215 74.4
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 2.0e-81 306.2 224 69.2
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 2.0e-81 306.2 225 69.8
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 2.7e-81 305.8 217 73.7
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 3.5e-81 305.4 224 69.6
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 5.9e-81 304.7 220 70.5
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 5.9e-81 304.7 202 74.3
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 5.9e-81 304.7 224 68.8
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 5.9e-81 304.7 224 71.4
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 1.0e-80 303.9 214 72.0
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 2.2e-80 302.8 214 69.6
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 2.9e-80 302.4 226 68.1
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 3.8e-80 302.0 219 70.3
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 3.8e-80 302.0 281 60.1
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 5.0e-80 301.6 209 73.2
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.0e-80 301.6 225 71.1
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 6.5e-80 301.2 221 71.9
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 8.5e-80 300.8 225 71.1
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 8.5e-80 300.8 221 70.6
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 1.1e-79 300.4 240 66.2
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 1.5e-79 300.1 221 70.6
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 2.5e-79 299.3 214 72.0
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 2.5e-79 299.3 221 70.6
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 2.5e-79 299.3 221 69.7
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 3.2e-79 298.9 221 69.7
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 5.5e-79 298.1 221 69.7
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 9.4e-79 297.4 213 67.6
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.4e-77 293.5 210 70.0
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 1.4e-77 293.5 221 68.8
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 5.2e-77 291.6 220 69.1
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 1.2e-76 290.4 209 69.9
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 2.0e-76 289.7 222 69.8
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 2.6e-76 289.3 218 68.8
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 9.8e-76 287.3 245 63.7
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 2.2e-75 286.2 216 66.2
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 2.2e-75 286.2 221 69.2
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 2.2e-75 286.2 218 69.3
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.1e-74 283.9 221 66.5
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 2.4e-74 282.7 214 67.8
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 3.1e-74 282.3 221 67.0
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 5.4e-74 281.6 208 67.8
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 7.0e-74 281.2 253 60.9
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 1.6e-73 280.0 221 66.5
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 1.7e-72 276.6 224 67.0
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 3.8e-72 275.4 221 67.4
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 8.6e-72 274.2 210 64.3
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 9.5e-71 270.8 224 66.5
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 1.6e-70 270.0 224 65.6
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 1.4e-69 266.9 316 49.1
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 1.4e-69 266.9 196 65.8
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 4.0e-69 265.4 169 80.5
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 4.4e-68 261.9 301 54.2
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 4.4e-68 261.9 170 78.2
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.0e-65 253.1 220 60.5
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.5e-65 252.3 165 77.6
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 7.8e-65 251.1 126 96.8
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 6.6e-64 248.1 228 63.2
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 5.2e-61 238.4 208 64.4
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 5.8e-60 235.0 210 59.0
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.1e-58 230.7 172 68.6
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 1.4e-58 230.3 216 58.3
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 4.1e-58 228.8 219 52.5
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 1.0e-56 224.2 205 61.0
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 7.3e-55 218.0 169 70.4
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 1.2e-54 217.2 125 86.4
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 1.6e-54 216.9 175 58.9
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 3.6e-54 215.7 210 52.9
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 1.1e-53 214.2 222 51.8
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 2.0e-52 209.9 147 74.8
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 2.9e-51 206.1 164 65.2
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 3.2e-50 202.6 251 43.8
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 4.1e-50 202.2 117 81.2
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 4.6e-49 198.7 162 66.0
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 4.7e-46 188.7 103 84.5
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 2.3e-45 186.4 127 70.1
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 5.4e-42 175.3 220 46.8
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 3.5e-41 172.6 217 46.1
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 1.5e-39 167.2 143 64.3
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 3.3e-39 166.0 189 52.4
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 2.6e-36 156.4 95 89.5
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 8.4e-35 151.4 186 45.2
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 1.4e-34 150.6 190 48.9
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.8e-30 136.3 123 64.2
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 2.4e-29 133.3 80 77.5
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.6e-25 120.6 159 49.1
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 6.0e-25 118.6 75 77.3
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 1.1e-23 114.4 82 69.5
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 2.8e-22 109.8 93 61.3
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 2.8e-22 109.8 167 41.9
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 6.9e-21 105.1 62 75.8
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 9.0e-21 104.8 93 58.1
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 4.5e-20 102.4 109 53.2
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 2.2e-19 100.1 81 64.2
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 3.8e-19 99.4 65 75.4
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 1.1e-18 97.8 209 35.9
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 1.4e-18 97.4 59 79.7
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 1.0e-16 91.3 176 35.8
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 2.3e-16 90.1 144 40.3
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 2.8e-14 83.2 108 47.2
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 8.1e-14 81.6 164 35.4
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 1.5e-12 77.4 67 59.7
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 1.9e-10 70.5 46 71.7
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 1.3e-08 64.3 52 63.5
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 1.1e-07 61.2 41 68.3
arahy.Tifrunner.gnm1.ann1.X21LXD Arachis hypogaea HOM05D000001 ORTHO05D085495 1.6e-06 57.4 121 37.2
QL05p059782 Quercus lobata HOM05D000003 ORTHO05D000006 2.8e-06 56.6 36 77.8
Nitab4.5_0000001g0510 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.7e-06 56.2 34 67.6


User provided reference genes

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