Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 3.5e-98 361.7 194 100.0
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 6.1e-82 307.8 194 86.1
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 9.4e-59 230.7 202 61.9
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 2.1e-58 229.6 135 94.1
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 2.0e-56 223.0 200 61.0
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 3.7e-55 218.8 202 60.4
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 3.7e-55 218.8 200 59.0
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 6.3e-55 218.0 202 60.9
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 1.1e-54 217.2 202 60.4
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 1.4e-54 216.9 201 60.7
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 2.4e-54 216.1 204 58.8
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 4.1e-54 215.3 202 57.9
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 4.1e-54 215.3 202 59.9
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 5.4e-54 214.9 205 57.1
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 9.2e-54 214.2 202 58.9
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 1.2e-53 213.8 204 57.8
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 5.9e-53 211.5 205 57.1
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.0e-52 210.7 205 57.6
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 1.7e-52 209.9 201 56.7
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 6.6e-52 208.0 199 55.3
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 6.6e-52 208.0 198 57.6
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 8.6e-52 207.6 201 56.7
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 1.9e-51 206.5 201 58.7
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 1.2e-50 203.8 196 57.1
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.6e-50 203.4 201 56.7
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.6e-50 203.4 201 56.7
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 2.8e-50 202.6 197 55.3
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 3.6e-50 202.2 202 56.9
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 4.7e-50 201.8 199 56.3
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 8.0e-50 201.1 206 58.3
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 8.0e-50 201.1 198 55.1
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 1.4e-49 200.3 216 55.1
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 1.4e-49 200.3 202 55.0
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 1.8e-49 199.9 198 55.6
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 4.0e-49 198.7 200 55.0
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 5.2e-49 198.4 203 53.7
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 6.8e-49 198.0 202 54.5
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 6.8e-49 198.0 202 54.5
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 1.2e-48 197.2 199 51.8
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 1.5e-48 196.8 200 55.0
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 3.4e-48 195.7 198 52.5
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 3.4e-48 195.7 198 52.5
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.4e-48 195.3 200 56.0
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 4.4e-48 195.3 202 53.5
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 4.4e-48 195.3 202 53.5
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 4.4e-48 195.3 194 55.2
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 7.5e-48 194.5 203 54.7
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 9.8e-48 194.1 203 54.2
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 9.8e-48 194.1 198 55.6
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 1.3e-47 193.7 195 55.9
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.7e-47 193.4 202 52.5
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 1.7e-47 193.4 198 51.5
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 3.7e-47 192.2 198 56.1
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 3.7e-47 192.2 198 56.1
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 4.9e-47 191.8 200 53.5
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 4.9e-47 191.8 198 53.5
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 4.9e-47 191.8 203 52.2
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 6.4e-47 191.4 201 53.7
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 6.4e-47 191.4 196 55.1
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 6.4e-47 191.4 199 52.3
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 8.3e-47 191.0 209 52.6
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.4e-46 190.3 186 55.4
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 1.4e-46 190.3 200 53.5
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 1.8e-46 189.9 212 49.1
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 2.4e-46 189.5 203 51.7
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 2.4e-46 189.5 196 53.1
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 2.4e-46 189.5 201 50.7
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 5.4e-46 188.3 202 52.5
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 5.4e-46 188.3 196 52.6
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 5.4e-46 188.3 198 52.5
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 9.2e-46 187.6 201 52.7
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.2e-45 187.2 201 55.2
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.2e-45 187.2 201 55.2
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 1.6e-45 186.8 196 52.0
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.6e-45 186.8 204 52.5
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 2.0e-45 186.4 197 56.3
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 2.0e-45 186.4 197 56.3
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 2.0e-45 186.4 197 56.3
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 2.7e-45 186.0 196 52.0
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 3.5e-45 185.7 202 55.4
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 3.5e-45 185.7 197 52.3
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 5.9e-45 184.9 205 50.2
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 1.3e-44 183.7 204 52.0
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 2.3e-44 183.0 205 51.7
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 3.0e-44 182.6 198 50.5
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 3.0e-44 182.6 201 50.2
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 3.0e-44 182.6 201 49.8
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 5.0e-44 181.8 196 52.6
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 6.6e-44 181.4 199 52.3
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 6.6e-44 181.4 199 52.3
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 6.6e-44 181.4 199 52.3
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 6.6e-44 181.4 219 48.9
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 1.1e-43 180.6 199 51.3
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 1.1e-43 180.6 199 51.3
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 1.5e-43 180.3 199 51.3
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 1.5e-43 180.3 199 51.3
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 1.9e-43 179.9 203 51.2
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 7.3e-43 177.9 272 42.6
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 2.1e-42 176.4 198 54.0
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 2.8e-42 176.0 202 50.0
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 3.6e-42 175.6 197 50.8
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 6.2e-42 174.9 194 52.1
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.4e-41 173.7 196 50.0
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 1.4e-41 173.7 197 49.2
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 1.4e-41 173.7 211 51.7
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 1.4e-41 173.7 208 49.5
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 1.8e-41 173.3 195 51.8
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.8e-41 173.3 204 51.0
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 3.1e-41 172.6 261 42.5
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 6.8e-41 171.4 204 51.5
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 1.5e-40 170.2 193 48.2
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 1.5e-40 170.2 201 47.8
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 1.5e-40 170.2 153 62.7
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 2.0e-40 169.9 207 49.3
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 2.0e-40 169.9 205 47.8
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 4.4e-40 168.7 196 50.0
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 9.8e-40 167.5 198 52.0
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 4.9e-39 165.2 203 48.8
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 6.4e-39 164.9 196 49.0
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 1.9e-38 163.3 198 46.0
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 2.4e-38 162.9 194 45.9
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 2.4e-38 162.9 202 49.5
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 7.0e-38 161.4 203 47.3
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 9.2e-38 161.0 203 47.3
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.6e-37 160.2 198 47.5
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 4.6e-37 158.7 193 46.1
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.7e-36 156.8 206 47.6
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 2.3e-36 156.4 222 43.2
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 5.0e-36 155.2 195 49.7
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 5.0e-36 155.2 194 45.9
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 8.6e-36 154.5 202 44.6
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 1.1e-35 154.1 150 58.0
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 1.1e-35 154.1 180 50.0
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.5e-35 153.7 202 46.5
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.2e-34 150.6 195 49.7
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.3e-33 146.4 88 80.7
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 2.3e-33 146.4 329 34.0
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 2.6e-32 142.9 200 47.5
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 3.4e-32 142.5 99 70.7
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 1.4e-30 137.1 146 61.0
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 2.4e-30 136.3 188 43.1
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 4.1e-30 135.6 201 42.3
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 3.5e-29 132.5 109 61.5
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 3.0e-28 129.4 198 39.4
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 8.6e-28 127.9 163 44.8
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 7.3e-27 124.8 89 69.7
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 1.2e-26 124.0 94 64.9
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 8.1e-26 121.3 89 64.0
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 8.1e-26 121.3 177 41.8
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 1.4e-25 120.6 93 63.4
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 1.8e-25 120.2 153 45.8
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 2.3e-25 119.8 92 65.2
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 6.4e-23 111.7 195 41.5
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 4.6e-21 105.5 156 39.1
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 7.8e-21 104.8 151 41.1
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.6e-18 95.9 155 40.6
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 8.9e-17 91.3 73 65.8
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 3.4e-16 89.4 151 39.7
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 5.8e-16 88.6 164 39.6
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 2.3e-12 76.6 44 84.1
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 2.5e-11 73.2 40 85.0
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 5.6e-11 72.0 44 79.5
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 5.6e-11 72.0 44 79.5
Haze_08158 Corylus avellana HOM05D002388 ORTHO05D004745 1.6e-10 70.5 88 45.5
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 1.1e-09 67.8 106 36.8
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 5.3e-09 65.5 52 57.7
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 1.2e-08 64.3 45 66.7
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.5e-08 63.9 123 36.6
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 4.9e-07 58.9 120 34.2
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 1.4e-06 57.4 78 43.6
BcaC01g02570 Brassica carinata HOM05D002388 ORTHO05D004745 5.4e-06 55.5 98 42.9
BcaC05g25932 Brassica carinata HOM05D002388 ORTHO05D004745 5.4e-06 55.5 98 42.9
C05p18840 Brassica napus HOM05D002388 ORTHO05D004745 5.4e-06 55.5 98 42.9
BolC3t18589H Brassica oleracea HOM05D002388 ORTHO05D004745 5.4e-06 55.5 98 42.9
MELO3C003432.2 Cucumis melo HOM05D002388 ORTHO05D004745 5.4e-06 55.5 67 46.3


User provided reference genes

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