Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G001380 Cucumis sativus L. HOM05D006137 ORTHO05D007697 3.3e-212 741.5 385 100.0
MELO3C013825.2 Cucumis melo HOM05D006137 ORTHO05D007697 4.4e-201 704.5 380 96.3
ClCG10G001310 Citrullus lanatus HOM05D006137 ORTHO05D007697 1.1e-180 636.7 444 78.4
Sed0022354 Sechium edule HOM05D006137 ORTHO05D007697 3.4e-145 518.8 383 72.1
TWI15G1160 Tripterygium wilfordii HOM05D006137 ORTHO05D007697 2.9e-136 489.2 380 68.2
CiPaw.11G098100 Carya illinoinensis HOM05D006137 ORTHO05D007697 5.0e-136 488.4 377 70.0
Duzib068G1414 Durio zibethinus HOM05D006137 ORTHO05D007697 3.2e-135 485.7 369 68.0
MD06G1026400 Malus domestica HOM05D006137 ORTHO05D007697 4.2e-135 485.3 317 74.1
Ciclev10001458m.g Citrus clementina HOM05D006137 ORTHO05D007697 5.5e-135 485.0 377 67.9
Dinv25255 Davidia involucrata HOM05D006137 ORTHO05D007697 1.2e-134 483.8 371 68.2
Gohir.D12G208800 Gossypium hirsutum HOM05D006137 ORTHO05D007697 1.2e-134 483.8 376 67.3
Gorai.008G224300 Gossypium raimondii HOM05D006137 ORTHO05D007697 1.0e-133 480.7 377 66.6
Potri.003G096600 Populus trichocarpa HOM05D006137 ORTHO05D007697 5.2e-133 478.4 385 66.2
Thecc.03G309800 Theobroma cacao HOM05D006137 ORTHO05D007697 5.2e-133 478.4 374 66.8
Gohir.A12G206400 Gossypium hirsutum HOM05D006137 ORTHO05D007697 4.4e-132 475.3 376 66.0
FvH4_2g06760 Fragaria vesca HOM05D006137 ORTHO05D007697 9.7e-132 474.2 310 73.2
FAN08G1929 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.7e-131 473.4 375 65.1
TAR629G2895 Trochodendron aralioides HOM05D006137 ORTHO05D007697 2.8e-131 472.6 375 65.3
Medtr5g029550 Medicago truncatula HOM05D006137 ORTHO05D007697 4.8e-131 471.9 379 64.9
VMungo1215G0535 Vigna mungo HOM05D006137 ORTHO05D007697 6.3e-131 471.5 312 72.8
FvH4_5g23010 Fragaria vesca HOM05D006137 ORTHO05D007697 8.2e-131 471.1 376 65.2
COL.COLO4_16947 Corchorus olitorius HOM05D006137 ORTHO05D007697 3.1e-130 469.2 377 63.9
TPR.G19427 Trifolium pratense HOM05D006137 ORTHO05D007697 4.1e-130 468.8 350 67.1
FAN18G2668 Fragaria x ananassa HOM05D006137 ORTHO05D007697 9.1e-130 467.6 298 74.8
FAN04G0555 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.2e-129 467.2 373 64.3
arahy.Tifrunner.gnm1.ann1.3JZK2J Arachis hypogaea HOM05D006137 ORTHO05D007697 1.6e-129 466.8 314 72.0
arahy.Tifrunner.gnm1.ann1.J91B8N Arachis hypogaea HOM05D006137 ORTHO05D007697 1.6e-129 466.8 314 72.0
PGR042G0393 Punica granatum HOM05D006137 ORTHO05D007697 3.5e-129 465.7 387 63.6
RcHm_v2.0_Chr7g0211741 Rosa chinensis HOM05D006137 ORTHO05D007697 3.5e-129 465.7 374 63.9
FAN13G2862 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.0e-128 464.2 392 62.2
Lalb_Chr09g0325501 Lupinus albus HOM05D006137 ORTHO05D007697 1.3e-128 463.8 380 63.2
Atru.chr6.1520 Acer truncatum HOM05D006137 ORTHO05D007697 2.9e-128 462.6 391 62.4
FAN18G2637 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.9e-128 462.6 377 63.7
BolC4t27919H Brassica oleracea HOM05D006137 ORTHO05D007697 5.0e-128 461.8 321 71.3
CSS0021967 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 5.0e-128 461.8 396 61.6
Carub.0004s1719 Capsella rubella HOM05D006137 ORTHO05D007697 6.5e-128 461.5 379 64.9
A04p26930 Brassica napus HOM05D006137 ORTHO05D007697 8.5e-128 461.1 321 70.7
C04p64320 Brassica napus HOM05D006137 ORTHO05D007697 8.5e-128 461.1 329 69.6
BcaB06g28845 Brassica carinata HOM05D006137 ORTHO05D007697 1.1e-127 460.7 329 69.6
Sp4g17720 Schrenkiella parvula HOM05D006137 ORTHO05D007697 2.5e-127 459.5 366 66.1
Glyma.01G014900 Glycine max HOM05D006137 ORTHO05D007697 3.2e-127 459.1 369 64.8
Thhalv10016768m.g Eutrema salsugineum HOM05D006137 ORTHO05D007697 4.2e-127 458.8 328 69.8
AT2G35500 Arabidopsis thaliana HOM05D006137 ORTHO05D007697 5.5e-127 458.4 370 65.4
Sabra03G0065200 Salix brachista HOM05D006137 ORTHO05D007697 7.2e-127 458.0 303 73.3
AL4G31550 Arabidopsis lyrata HOM05D006137 ORTHO05D007697 2.7e-126 456.1 379 64.6
Lj3g0008594 Lotus japonicus HOM05D006137 ORTHO05D007697 8.0e-126 454.5 370 63.5
Nn3g19394 Nelumbo nucifera HOM05D006137 ORTHO05D007697 1.0e-125 454.1 367 64.0
Phvul.002G137400 Phaseolus vulgaris HOM05D006137 ORTHO05D007697 1.0e-125 454.1 338 67.2
GSVIVG01013108001 Vitis vinifera HOM05D006137 ORTHO05D007697 1.0e-125 454.1 368 64.1
CARHR129650 Cardamine hirsuta HOM05D006137 ORTHO05D007697 1.4e-125 453.8 374 64.4
CSS0050317 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 1.8e-125 453.4 299 71.9
BraA04t18192Z Brassica rapa HOM05D006137 ORTHO05D007697 3.0e-125 452.6 382 64.1
Nitab4.5_0002190g0020 Nicotiana tabacum HOM05D006137 ORTHO05D007697 5.7e-124 448.4 376 64.6
Peaxi162Scf00170g00615 Petunia axillaris HOM05D006137 ORTHO05D007697 1.3e-123 447.2 375 64.0
BcaC02g07708 Brassica carinata HOM05D006137 ORTHO05D007697 1.7e-123 446.8 298 72.5
CANSAT21G0809 Cannabis sativa HOM05D006137 ORTHO05D007697 2.8e-123 446.0 388 61.6
Sopen08g024990 Solanum pennellii HOM05D006137 ORTHO05D007697 2.8e-123 446.0 374 63.1
CANSAT21G0548 Cannabis sativa HOM05D006137 ORTHO05D007697 1.4e-122 443.7 387 62.0
Solyc08g076410.4 Solanum lycopersicum HOM05D006137 ORTHO05D007697 1.4e-122 443.7 379 62.8
Hma1.2p1_1027F.1_g249480 Hydrangea macrophylla HOM05D006137 ORTHO05D007697 1.8e-122 443.4 374 61.2
Rhsim11G0021000 Rhododendron simsii HOM05D006137 ORTHO05D007697 5.4e-122 441.8 393 60.3
PGSC0003DMG400014792 Solanum tuberosum HOM05D006137 ORTHO05D007697 5.4e-122 441.8 375 62.9
Psat2g138120 Pisum sativum HOM05D006137 ORTHO05D007697 7.7e-121 438.0 334 66.5
CAN.G726.20 Capsicum annuum HOM05D006137 ORTHO05D007697 1.1e-119 434.1 390 60.0
Aqoxy2G03876 Aquilegia oxysepala HOM05D006137 ORTHO05D007697 1.2e-118 430.6 321 64.8
Cc08_g03270 Coffea canephora HOM05D006137 ORTHO05D007697 1.2e-118 430.6 381 61.2
DCAR_008226 Daucus carota HOM05D006137 ORTHO05D007697 1.4e-117 427.2 298 69.8
EL10Ac2g03238 Beta vulgaris HOM05D006137 ORTHO05D007697 1.8e-117 426.8 334 65.6
PSO782G3150 Papaver somniferum HOM05D006137 ORTHO05D007697 1.2e-116 424.1 368 58.2
QL12p001513 Quercus lobata HOM05D006137 ORTHO05D007697 1.5e-116 423.7 354 64.4
Oeu017078.1 Olea europaea HOM05D006137 ORTHO05D007697 1.3e-115 420.6 298 67.4
HanXRQChr04g0098961 Helianthus annuus HOM05D006137 ORTHO05D007697 2.8e-115 419.5 360 61.7
THA.LOC104814417 Tarenaya hassleriana HOM05D006137 ORTHO05D007697 3.7e-115 419.1 319 66.8
PSO063G4597 Papaver somniferum HOM05D006137 ORTHO05D007697 4.9e-115 418.7 358 58.7
ECA233G6209 Erigeron canadensis HOM05D006137 ORTHO05D007697 6.3e-115 418.3 372 58.3
FAN24G0436 Fragaria x ananassa HOM05D006137 ORTHO05D007697 3.1e-114 416.0 283 71.7
Nitab4.5_0003416g0030 Nicotiana tabacum HOM05D006137 ORTHO05D007697 7.0e-114 414.8 376 60.9
Aa31LG9G15490 Aethionema arabicum HOM05D006137 ORTHO05D007697 2.8e-110 402.9 380 58.4
Ah.09g233490 Amaranthus hybridus HOM05D006137 ORTHO05D007697 6.1e-110 401.7 372 58.3
CDE06G2536 Ceratophyllum demersum HOM05D006137 ORTHO05D007697 2.6e-108 396.4 386 55.7
Os10g0577700 Oryza sativa ssp. japonica HOM05D006137 ORTHO05D007697 2.6e-108 396.4 317 60.6
Prupe.5G028300 Prunus persica HOM05D006137 ORTHO05D007697 8.3e-107 391.3 387 57.9
Eucgr.E00233 Eucalyptus grandis HOM05D006137 ORTHO05D007697 1.4e-106 390.6 290 66.2
Migut.A01172 Erythranthe guttata HOM05D006137 ORTHO05D007697 5.4e-106 388.7 305 65.6
unitig_748.g7545 Utricularia gibba HOM05D006137 ORTHO05D007697 5.4e-106 388.7 375 56.8
vmacro08163 Vaccinium macrocarpon HOM05D006137 ORTHO05D007697 1.0e-104 384.4 271 67.9
Sc24g0002950 Simmondsia chinensis HOM05D006137 ORTHO05D007697 1.3e-104 384.0 280 67.9
MSTRG.24846 Avicennia marina HOM05D006137 ORTHO05D007697 2.3e-104 383.3 369 55.6
Lsat_1_v5_gn_6_3681 Lactuca sativa HOM05D006137 ORTHO05D007697 5.6e-103 378.6 380 55.8
HPP92_014848 Vanilla planifolia HOM05D006137 ORTHO05D007697 5.6e-103 378.6 308 59.7
Zm00001eb025030 Zea mays HOM05D006137 ORTHO05D007697 6.4e-99 365.2 334 54.5
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 1.6e-97 360.5 305 62.0
ATR0829G218 Amborella trichopoda HOM05D006137 ORTHO05D007697 1.1e-95 354.4 270 64.4
Lj2A232T29 Lonicera japonica HOM05D006137 ORTHO05D007697 1.8e-93 347.1 326 58.0
Oeu019613.1 Olea europaea HOM05D006137 ORTHO05D007697 3.1e-93 346.3 323 56.7
Haze_08142 Corylus avellana HOM05D006137 ORTHO05D007697 3.7e-91 339.3 525 43.8
FAN20G1935 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.1e-90 337.8 374 52.9
Oeu002327.1 Olea europaea HOM05D006137 ORTHO05D007697 5.4e-90 335.5 225 71.6
Oeu019614.1 Olea europaea HOM05D006137 ORTHO05D007697 4.3e-87 325.9 323 55.1
SEGI_14560 Sequoiadendron giganteum HOM05D006137 ORTHO05D007697 1.2e-86 324.3 295 53.6
Mapoly0006s0263 Marchantia polymorpha HOM05D006137 ORTHO05D007697 4.1e-82 309.3 358 47.2
Eucgr.E00231 Eucalyptus grandis HOM05D006137 ORTHO05D007697 7.1e-82 308.5 267 59.2
SMO228G0118 Selaginella moellendorffii HOM05D006137 ORTHO05D007697 4.7e-78 295.8 304 49.7
AagrBONN_evm.TU.Sc2ySwM_344.1996 Anthoceros agrestis HOM05D006137 ORTHO05D007697 2.5e-71 273.5 305 45.6
Pp3c12_17740 Physcomitrium patens HOM05D006137 ORTHO05D007697 3.1e-69 266.5 384 39.1
Manes.15G185701 Manihot esculenta HOM05D006137 ORTHO05D007697 9.0e-69 265.0 236 60.2
Ca_25185_v3 Cicer arietinum L. HOM05D006137 ORTHO05D007697 1.7e-67 260.8 205 64.4
AUR62002644 Chenopodium quinoa HOM05D006137 ORTHO05D007697 2.5e-55 220.3 197 57.9
Hund09822 Selenicereus undatus HOM05D006137 ORTHO05D007697 2.5e-55 220.3 145 73.8
Oeu033557.2 Olea europaea HOM05D006137 ORTHO05D007697 2.5e-50 203.8 156 62.2
C03p78000 Brassica napus HOM05D006137 ORTHO05D007697 3.3e-47 193.4 159 61.6
AUR62002645 Chenopodium quinoa HOM05D006137 ORTHO05D007697 1.6e-46 191.0 237 47.7
Hund09821 Selenicereus undatus HOM05D006137 ORTHO05D000006 5.9e-44 182.6 129 65.1
AUR62040998 Chenopodium quinoa HOM05D006137 ORTHO05D007697 1.3e-43 181.4 136 61.8
BolC1t02019H Brassica oleracea HOM05D006137 ORTHO05D007697 1.1e-42 178.3 161 59.6
BolC3t20061H Brassica oleracea HOM05D006137 ORTHO05D007697 2.8e-38 163.7 166 53.0
C01p20920 Brassica napus HOM05D006137 ORTHO05D007697 3.7e-38 163.3 166 54.2
Glyma.07G152633 Glycine max HOM05D006137 ORTHO05D007697 6.3e-38 162.5 112 67.9
MCO11G470 Micromonas commoda HOM05D006137 ORTHO05D007697 2.0e-31 141.0 206 36.4
CBR_g18978 Chara braunii HOM05D006137 ORTHO05D007697 7.4e-31 139.0 178 44.9
Medtr1g009450 Medicago truncatula HOM05D006137 ORTHO05D007697 9.4e-26 122.1 126 54.8
AUR62040999 Chenopodium quinoa HOM05D006137 ORTHO05D007697 2.7e-25 120.6 86 70.9
PRCOL_00002339 Prasinoderma coloniale HOM05D006137 ORTHO05D007697 3.7e-22 110.2 191 34.6
C02p41610 Brassica napus HOM05D006137 ORTHO05D007697 1.3e-11 75.1 37 83.8
BolC2t10179H Brassica oleracea HOM05D006137 ORTHO05D007697 1.3e-11 75.1 37 83.8
BcaC09g50780 Brassica carinata HOM05D006137 ORTHO05D007697 2.7e-09 67.4 99 43.4
BolC2t11174H Brassica oleracea HOM05D006137 ORTHO05D007697 5.2e-08 63.2 31 83.9
Cre16.g659850 Chlamydomonas reinhardtii HOM05D006137 ORTHO05D007697 5.2e-08 63.2 204 24.5
MCO12G135 Micromonas commoda HOM05D002058 ORTHO05D003758 2.6e-07 60.8 176 26.1
Mapoly0035s0139 Marchantia polymorpha HOM05D002058 ORTHO05D003758 3.7e-06 57.0 182 30.8
Mapoly0089s0033 Marchantia polymorpha HOM05D002058 ORTHO05D003758 6.3e-06 56.2 139 31.7


User provided reference genes

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