Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G001140 Cucumis sativus L. HOM05D001237 ORTHO05D009110 1.4e-204 716.1 376 100.0
MELO3C013804.2 Cucumis melo HOM05D001237 ORTHO05D009110 4.4e-177 624.8 338 92.9
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 1.5e-153 546.6 324 85.5
ClCG10G001120 Citrullus lanatus HOM05D001237 ORTHO05D009110 2.8e-147 525.8 327 84.1
CANSAT25G2402 Cannabis sativa HOM05D001237 ORTHO05D009110 9.2e-127 457.6 277 80.5
GSVIVG01022633001 Vitis vinifera HOM05D001237 ORTHO05D009110 2.3e-125 453.0 317 72.6
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 3.9e-125 452.2 321 70.7
Potri.003G100300 Populus trichocarpa HOM05D001237 ORTHO05D009110 1.9e-124 449.9 262 82.8
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 2.5e-124 449.5 283 77.0
Actinidia18147 Actinidia chinensis HOM05D001237 ORTHO05D009110 4.3e-124 448.7 322 71.4
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 4.3e-124 448.7 273 81.0
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 4.3e-124 448.7 261 82.4
CiPaw.12G070700 Carya illinoinensis HOM05D001237 ORTHO05D009110 7.3e-124 448.0 319 72.1
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 2.1e-123 446.4 269 81.4
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 6.2e-123 444.9 324 71.0
TAR629G2165 Trochodendron aralioides HOM05D001237 ORTHO05D009110 1.1e-122 444.1 260 81.9
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 1.8e-122 443.4 280 77.1
Eucgr.E01249 Eucalyptus grandis HOM05D001237 ORTHO05D009110 4.0e-122 442.2 277 78.0
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 1.5e-121 440.3 320 69.7
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 2.6e-121 439.5 259 81.9
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 3.4e-121 439.1 266 79.3
THA.LOC104812764 Tarenaya hassleriana HOM05D001237 ORTHO05D009110 4.4e-121 438.7 325 70.2
CAN.G773.2 Capsicum annuum HOM05D001237 ORTHO05D009110 7.6e-121 438.0 259 81.5
Nitab4.5_0002735g0030 Nicotiana tabacum HOM05D001237 ORTHO05D009110 7.6e-121 438.0 258 81.8
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 7.6e-121 438.0 268 80.2
Solyc08g075990.3 Solanum lycopersicum HOM05D001237 ORTHO05D009110 7.6e-121 438.0 259 81.5
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 9.9e-121 437.6 264 81.4
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 9.9e-121 437.6 266 78.9
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 9.9e-121 437.6 273 79.1
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 9.9e-121 437.6 270 78.9
FvH4_5g23760 Fragaria vesca HOM05D001237 ORTHO05D009110 1.3e-120 437.2 266 78.9
Rhsim07G0137000 Rhododendron simsii HOM05D001237 ORTHO05D009110 1.7e-120 436.8 266 80.5
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 1.7e-120 436.8 318 69.5
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 2.2e-120 436.4 268 79.1
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 3.7e-120 435.6 316 71.2
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 6.4e-120 434.9 266 78.6
Hma1.2p1_0979F.1_g243590 Hydrangea macrophylla HOM05D001237 ORTHO05D009110 1.1e-119 434.1 275 78.2
Nitab4.5_0001033g0010 Nicotiana tabacum HOM05D001237 ORTHO05D009110 1.4e-119 433.7 259 81.1
Cfa012569 Carpinus fangiana HOM05D001237 ORTHO05D009110 2.1e-118 429.9 289 74.7
Migut.E01337 Erythranthe guttata HOM05D001237 ORTHO05D009110 2.7e-118 429.5 261 80.1
Gohir.A08G151200 Gossypium hirsutum HOM05D001237 ORTHO05D009110 7.8e-118 427.9 276 76.8
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 1.3e-117 427.2 261 79.3
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 1.7e-117 426.8 269 78.4
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 3.9e-117 425.6 318 69.5
Gorai.004G179700 Gossypium raimondii HOM05D001237 ORTHO05D009110 5.1e-117 425.2 277 76.2
Medtr5g027220 Medicago truncatula HOM05D001237 ORTHO05D009110 1.1e-116 424.1 269 77.7
A06p38920 Brassica napus HOM05D001237 ORTHO05D009110 1.5e-116 423.7 261 79.7
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 1.9e-116 423.3 331 68.3
COL.COLO4_27340 Corchorus olitorius HOM05D001237 ORTHO05D009110 2.5e-116 422.9 316 68.0
DCAR_024946 Daucus carota HOM05D001577 ORTHO05D009110 2.5e-116 422.9 254 79.9
EL10Ac5g11946 Beta vulgaris HOM05D001237 ORTHO05D009110 3.3e-116 422.5 269 77.0
BraA06t26806Z Brassica rapa HOM05D001237 ORTHO05D009110 4.3e-116 422.2 254 80.7
Lalb_Chr05g0215521 Lupinus albus HOM05D001237 ORTHO05D009110 4.3e-116 422.2 263 77.6
ECA233G0844 Erigeron canadensis HOM05D001237 ORTHO05D009110 5.6e-116 421.8 259 78.8
Lj2g0015654 Lotus japonicus HOM05D001237 ORTHO05D009110 9.6e-116 421.0 269 76.6
C07p39410 Brassica napus HOM05D001237 ORTHO05D009110 1.2e-115 420.6 261 79.3
Ah.07g201260 Amaranthus hybridus HOM05D001237 ORTHO05D009110 1.6e-115 420.2 257 79.4
PSO782G3536 Papaver somniferum HOM05D001237 ORTHO05D009110 2.1e-115 419.9 320 65.0
Phvul.002G132200 Phaseolus vulgaris HOM05D001237 ORTHO05D009110 2.1e-115 419.9 321 69.2
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 3.6e-115 419.1 254 79.5
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 8.1e-115 417.9 280 73.9
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 1.8e-114 416.8 261 77.4
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 3.1e-114 416.0 265 76.2
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 1.2e-113 414.1 323 67.5
CSS0010822 Camellia sinensis var. sinensis HOM05D001237 ORTHO05D009110 1.5e-113 413.7 327 67.0
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 9.9e-113 411.0 261 77.0
Thhalv10004626m.g Eutrema salsugineum HOM05D001237 ORTHO05D009110 2.2e-112 409.8 254 78.3
Aa31LG9G15560 Aethionema arabicum HOM05D001237 ORTHO05D009110 4.9e-112 408.7 271 75.3
BolC7t44460H Brassica oleracea HOM05D001237 ORTHO05D009110 3.2e-111 406.0 251 78.9
Zm00001eb208900 Zea mays HOM05D001237 ORTHO05D009110 6.0e-110 401.7 253 77.9
Ca_25144_v3 Cicer arietinum L. HOM05D001237 ORTHO05D000217 1.7e-109 400.2 258 76.7
Dinv15842 Davidia involucrata HOM05D001237 ORTHO05D009110 1.9e-108 396.7 285 69.5
Glyma.01G147700 Glycine max HOM05D001237 ORTHO05D009110 3.3e-108 396.0 264 75.4
Peaxi162Scf00408g00416 Petunia axillaris HOM05D001237 ORTHO05D009110 3.1e-106 389.4 283 71.0
CDE02G0540 Ceratophyllum demersum HOM05D001237 ORTHO05D009110 5.3e-106 388.7 231 81.0
Lsat_1_v5_gn_6_17621 Lactuca sativa HOM05D001237 ORTHO05D009110 9.9e-105 384.4 271 70.8
BcaC06g30758 Brassica carinata HOM05D001237 ORTHO05D009110 1.6e-102 377.1 261 73.6
Glyma.20G094800 Glycine max HOM05D001237 ORTHO05D009110 1.7e-101 373.6 226 81.4
Sabra03G0068500 Salix brachista HOM05D001237 ORTHO05D009110 8.7e-101 371.3 291 66.7
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 3.8e-96 355.9 266 63.9
CARHR182950 Cardamine hirsuta HOM05D001237 ORTHO05D009110 6.4e-96 355.1 213 80.3
HanXRQChr08g0226791 Helianthus annuus HOM05D001237 ORTHO05D009110 7.1e-95 351.7 287 65.5
SGA_v2.0_scaffold111G31373 Striga asiatica HOM05D001237 ORTHO05D009110 1.3e-93 347.4 203 81.3
unitig_747.g21357 Utricularia gibba HOM05D000467 ORTHO05D000379 1.4e-90 337.4 233 72.5
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 4.0e-90 335.9 283 58.0
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 5.7e-84 315.5 250 58.4
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 2.5e-79 300.1 279 54.1
CBR_g18855 Chara braunii HOM05D001237 ORTHO05D009110 4.3e-76 289.3 230 60.4
arahy.Tifrunner.gnm1.ann1.3EKV6C Arachis hypogaea HOM05D001237 ORTHO05D009110 3.3e-68 263.1 289 55.4
arahy.Tifrunner.gnm1.ann1.YIEM7C Arachis hypogaea HOM05D001237 ORTHO05D009110 3.3e-68 263.1 289 55.4
QL12p001026 Quercus lobata HOM05D001237 ORTHO05D009110 1.4e-66 257.7 213 65.7
Hund11115 Selenicereus undatus HOM05D001237 ORTHO05D009110 1.2e-65 254.6 151 82.8
Glyma.09G212000 Glycine max HOM05D001237 ORTHO05D009110 1.7e-64 250.8 168 73.8
SEGI_12758 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 3.7e-59 233.0 135 80.0
RcHm_v2.0_Chr7g0213121 Rosa chinensis HOM05D001237 ORTHO05D009110 4.2e-55 219.5 250 51.2
Cre04.g212500 Chlamydomonas reinhardtii HOM05D001237 ORTHO05D009110 6.3e-51 205.7 286 43.4
PRCOL_00004822 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 1.5e-47 194.5 270 42.6
MCO15G307 Micromonas commoda HOM05D001237 ORTHO05D009110 2.0e-44 184.1 290 38.3
Lju2073A0T61 Lonicera japonica HOM05D001237 ORTHO05D009110 3.1e-42 176.8 112 77.7
HPP92_025933 Vanilla planifolia HOM05D001237 ORTHO05D009110 4.1e-42 176.4 131 66.4
Sopen09g023280 Solanum pennellii HOM05D001237 ORTHO05D009110 1.6e-38 164.5 98 78.6
Gohir.D08G172350 Gossypium hirsutum HOM05D001237 ORTHO05D009110 1.4e-29 134.8 79 75.9
PRCOL_00006184 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 5.4e-26 122.9 278 31.7
MCO12G167 Micromonas commoda HOM05D001237 ORTHO05D009110 1.6e-25 121.3 289 30.8
SalBow1G6490 Salvia bowleyana HOM05D001237 ORTHO05D009110 1.6e-22 111.3 96 56.2
FAN04G3094 Fragaria x ananassa HOM05D001237 ORTHO05D009110 1.1e-18 98.6 71 69.0
SEGI_16157 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 1.4e-18 98.2 105 45.7
Gohir.D08G172400 Gossypium hirsutum HOM05D001237 ORTHO05D009110 1.0e-16 92.0 101 51.5
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 5.8e-12 76.3 355 25.1
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 1.2e-09 68.6 337 26.4
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 2.1e-09 67.8 326 25.2
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 3.5e-09 67.0 284 25.7
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 3.5e-09 67.0 304 24.3
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 7.8e-09 65.9 370 23.2
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 1.0e-08 65.5 294 25.5
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 1.3e-08 65.1 312 26.3
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 5.1e-08 63.2 349 23.8
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 5.1e-08 63.2 359 24.8
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 5.1e-08 63.2 295 25.4
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 5.1e-08 63.2 301 25.2
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 6.6e-08 62.8 301 24.9
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 6.6e-08 62.8 301 24.9
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 1.1e-07 62.0 300 24.0
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 1.1e-07 62.0 300 24.0
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.1e-07 62.0 370 22.7
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.1e-07 62.0 280 23.6
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 1.5e-07 61.6 297 25.6
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 1.5e-07 61.6 301 24.9
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 1.9e-07 61.2 294 25.9
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 1.9e-07 61.2 352 25.9
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 2.5e-07 60.8 363 23.4
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 3.3e-07 60.5 348 27.3
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 3.3e-07 60.5 305 25.6
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 3.3e-07 60.5 298 24.5
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 3.3e-07 60.5 296 26.4
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 4.3e-07 60.1 294 26.5
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 4.3e-07 60.1 328 24.1
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 4.3e-07 60.1 302 24.5
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 4.3e-07 60.1 282 23.8
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 4.3e-07 60.1 298 24.5
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 5.6e-07 59.7 296 25.7
vmacro14221 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 5.6e-07 59.7 41 75.6
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 7.3e-07 59.3 322 23.9
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 1.2e-06 58.5 285 24.9


User provided reference genes

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