Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 1.8e-91 339.3 190 100.0
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 3.3e-88 328.6 188 97.9
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 4.4e-85 318.2 188 89.4
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.7e-73 279.6 185 80.0
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 8.6e-73 277.3 187 79.1
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 1.5e-72 276.6 190 78.4
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.9e-72 276.2 185 79.5
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 3.3e-72 275.4 191 78.0
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 4.3e-72 275.0 190 77.4
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 5.6e-72 274.6 190 77.9
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 1.2e-71 273.5 191 78.0
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 1.6e-71 273.1 167 86.2
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 2.1e-71 272.7 166 84.9
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 3.6e-71 271.9 191 77.5
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 8.1e-71 270.8 167 85.6
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 8.1e-71 270.8 190 75.8
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 8.1e-71 270.8 191 75.9
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 1.1e-70 270.4 173 83.8
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 5.2e-70 268.1 167 83.8
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 5.2e-70 268.1 167 84.4
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 1.2e-69 266.9 188 76.1
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 2.6e-69 265.8 171 81.3
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 2.6e-69 265.8 191 74.9
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 2.6e-69 265.8 186 74.7
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 5.8e-69 264.6 155 88.4
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 1.3e-68 263.5 193 73.6
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 1.7e-68 263.1 166 83.7
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 1.7e-68 263.1 195 74.4
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 2.2e-68 262.7 166 82.5
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 3.7e-68 261.9 163 82.8
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 3.7e-68 261.9 202 70.8
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 3.7e-68 261.9 202 70.8
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.7e-68 261.9 202 70.8
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 4.9e-68 261.5 168 82.7
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 4.9e-68 261.5 166 83.1
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 6.4e-68 261.2 191 74.3
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 8.4e-68 260.8 165 80.6
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 1.4e-67 260.0 158 84.8
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 1.4e-67 260.0 165 81.8
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 2.4e-67 259.2 190 72.6
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 3.2e-67 258.8 165 80.6
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 4.1e-67 258.5 159 83.0
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 4.1e-67 258.5 158 84.8
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 4.1e-67 258.5 188 75.5
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 4.1e-67 258.5 165 81.2
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 4.1e-67 258.5 188 75.0
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 7.1e-67 257.7 196 73.5
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 7.1e-67 257.7 165 80.0
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 9.2e-67 257.3 158 83.5
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.2e-66 256.9 196 71.9
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.2e-66 256.9 196 73.0
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.6e-66 256.5 190 71.1
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 2.7e-66 255.8 188 72.3
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 2.7e-66 255.8 190 73.2
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 2.7e-66 255.8 165 78.8
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 3.5e-66 255.4 196 72.4
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 4.6e-66 255.0 158 84.2
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 6.0e-66 254.6 190 71.6
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 6.0e-66 254.6 193 70.5
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 6.0e-66 254.6 193 70.5
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.0e-65 253.8 188 73.9
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 1.7e-65 253.1 165 78.2
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 3.0e-65 252.3 169 77.5
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 3.0e-65 252.3 189 71.4
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 5.1e-65 251.5 192 72.4
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 8.6e-65 250.8 192 71.4
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 8.6e-65 250.8 188 72.3
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 1.5e-64 250.0 192 71.9
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 1.9e-64 249.6 161 80.7
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.9e-64 249.6 162 77.8
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 1.9e-64 249.6 166 78.9
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 1.9e-64 249.6 188 70.7
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 2.5e-64 249.2 233 69.5
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 2.5e-64 249.2 166 78.3
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 2.5e-64 249.2 194 68.0
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 4.3e-64 248.4 161 79.5
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 4.3e-64 248.4 193 69.9
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 4.3e-64 248.4 190 69.5
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 5.6e-64 248.1 164 78.7
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 7.3e-64 247.7 165 77.6
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 9.6e-64 247.3 192 69.8
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 2.8e-63 245.7 196 68.4
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 2.8e-63 245.7 156 81.4
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 4.7e-63 245.0 175 77.1
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 4.7e-63 245.0 156 78.2
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 6.2e-63 244.6 165 75.2
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 8.1e-63 244.2 156 78.8
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 8.1e-63 244.2 156 78.8
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 8.1e-63 244.2 169 76.9
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 1.1e-62 243.8 192 69.8
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 1.1e-62 243.8 169 76.3
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 1.4e-62 243.4 159 78.0
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 1.8e-62 243.0 166 74.7
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.8e-62 243.0 171 76.0
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 1.8e-62 243.0 193 68.4
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 2.4e-62 242.7 153 82.4
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 3.1e-62 242.3 161 77.0
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 3.1e-62 242.3 191 68.6
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 3.1e-62 242.3 156 77.6
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 4.0e-62 241.9 191 72.3
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 6.8e-62 241.1 166 74.7
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 2.0e-61 239.6 192 66.7
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 3.4e-61 238.8 194 68.0
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 3.4e-61 238.8 156 80.1
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 4.4e-61 238.4 191 68.6
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 7.6e-61 237.7 158 77.2
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 2.2e-60 236.1 209 63.6
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 2.2e-60 236.1 190 67.4
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 3.8e-60 235.3 159 74.8
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 1.4e-59 233.4 161 75.2
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 5.4e-59 231.5 156 76.9
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 9.3e-59 230.7 199 63.3
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 1.3e-57 226.9 192 66.1
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 2.3e-57 226.1 164 72.6
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 3.0e-57 225.7 193 67.4
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.5e-56 223.4 165 73.3
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 2.5e-56 222.6 166 72.9
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 5.6e-56 221.5 156 71.8
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 1.6e-55 219.9 168 72.0
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 1.6e-55 219.9 167 70.7
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 5.3e-54 214.9 192 64.1
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 9.0e-54 214.2 224 57.6
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 4.4e-53 211.8 189 64.0
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 2.9e-52 209.1 169 68.0
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 4.9e-52 208.4 168 68.5
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 2.4e-51 206.1 171 67.8
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 2.5e-48 196.1 139 72.7
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 1.3e-47 193.7 149 67.1
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 1.3e-47 193.7 144 69.4
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 9.0e-46 187.6 150 70.0
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 1.2e-45 187.2 192 58.3
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 3.4e-45 185.7 192 57.8
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.9e-43 179.9 135 72.6
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 2.3e-41 172.9 132 68.9
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 3.0e-41 172.6 111 76.6
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 8.7e-41 171.0 177 58.2
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.1e-39 166.4 104 78.8
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 4.0e-38 162.2 141 64.5
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.4e-37 159.1 131 65.6
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 4.5e-37 158.7 171 52.0
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 4.5e-37 158.7 131 64.9
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 1.0e-36 157.5 144 52.8
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.0e-36 157.5 131 64.9
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.3e-36 157.1 130 64.6
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 2.2e-36 156.4 156 50.6
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 8.4e-36 154.5 131 65.6
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 8.7e-33 144.4 82 86.6
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 1.1e-32 144.1 144 56.9
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 4.3e-32 142.1 108 67.6
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 2.1e-31 139.8 156 49.4
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 4.8e-31 138.7 144 47.9
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 6.3e-31 138.3 140 47.9
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 2.0e-29 133.3 106 61.3
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 3.7e-23 112.5 91 68.1
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 1.3e-20 104.0 87 67.8
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 2.2e-20 103.2 164 42.7
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 9.1e-14 81.3 58 67.2
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 2.3e-09 66.6 78 52.6
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 3.9e-09 65.9 136 41.2
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.6e-08 63.2 104 46.2
SpUn0008_0090 Schrenkiella parvula HOM05D000004 ORTHO05D027095 3.1e-06 56.2 43 62.8


User provided reference genes

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