Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 1.7e-50 202.2 91 100.0
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 1.6e-48 195.7 91 96.7
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 1.1e-41 172.9 91 86.8
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 1.6e-37 159.1 87 79.3
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 1.6e-37 159.1 79 86.1
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 3.7e-37 157.9 88 77.3
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 1.8e-36 155.6 85 78.8
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 1.8e-36 155.6 89 76.4
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 4.0e-36 154.5 90 75.6
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 5.3e-36 154.1 77 85.7
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 5.3e-36 154.1 88 75.0
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 9.0e-36 153.3 88 72.7
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 9.0e-36 153.3 88 72.7
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 1.2e-35 152.9 88 73.9
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 1.5e-35 152.5 89 74.2
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 2.0e-35 152.1 85 76.5
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 2.0e-35 152.1 88 71.6
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 3.4e-35 151.4 79 83.5
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 3.4e-35 151.4 80 81.2
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 4.5e-35 151.0 87 75.9
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 4.5e-35 151.0 76 84.2
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 4.5e-35 151.0 90 74.4
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 5.8e-35 150.6 80 80.0
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 5.8e-35 150.6 80 81.2
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 5.8e-35 150.6 89 73.0
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 7.6e-35 150.2 77 81.8
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 7.6e-35 150.2 77 81.8
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 9.9e-35 149.8 76 82.9
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.3e-34 149.4 80 80.0
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 1.3e-34 149.4 86 76.7
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 1.3e-34 149.4 86 76.7
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 1.3e-34 149.4 75 85.3
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 1.3e-34 149.4 80 80.0
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 2.2e-34 148.7 76 84.2
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 4.9e-34 147.5 87 73.6
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 4.9e-34 147.5 83 78.3
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 6.4e-34 147.1 78 79.5
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 6.4e-34 147.1 80 78.8
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 8.4e-34 146.7 89 73.0
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.1e-33 146.4 77 80.5
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.1e-33 146.4 77 80.5
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 1.1e-33 146.4 88 71.6
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 1.4e-33 146.0 80 78.8
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 1.4e-33 146.0 88 72.7
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 1.9e-33 145.6 83 77.1
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 1.9e-33 145.6 80 78.8
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.9e-33 145.6 88 69.3
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 1.9e-33 145.6 80 77.5
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 1.9e-33 145.6 80 80.0
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 2.4e-33 145.2 77 79.2
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 2.4e-33 145.2 82 76.8
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 3.2e-33 144.8 77 77.9
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 3.2e-33 144.8 89 70.8
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 3.2e-33 144.8 79 81.0
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 7.1e-33 143.7 87 69.0
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 9.3e-33 143.3 77 79.2
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 1.2e-32 142.9 81 76.5
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 1.2e-32 142.9 75 80.0
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 1.6e-32 142.5 82 74.4
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.6e-32 142.5 75 81.3
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 3.5e-32 141.4 81 75.3
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 3.5e-32 141.4 79 78.5
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 6.0e-32 140.6 81 76.5
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 7.9e-32 140.2 81 75.3
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 1.3e-31 139.4 76 75.0
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 1.3e-31 139.4 86 70.9
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 1.8e-31 139.0 78 76.9
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 2.3e-31 138.7 80 72.5
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 3.0e-31 138.3 89 68.5
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 5.1e-31 137.5 78 78.2
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 5.1e-31 137.5 78 78.2
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 6.7e-31 137.1 77 74.0
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 1.1e-30 136.3 87 67.8
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 1.9e-30 135.6 82 70.7
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 3.3e-30 134.8 90 71.1
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 4.8e-29 131.0 199 39.7
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 1.1e-28 129.8 90 68.9
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 1.4e-28 129.4 82 65.9
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 2.9e-26 121.7 140 45.7
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 1.4e-25 119.4 139 44.6
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 7.4e-22 107.1 70 65.7
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 3.2e-17 91.7 76 53.9
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 7.2e-17 90.5 40 95.0
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 7.9e-16 87.0 42 85.7
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 3.3e-14 81.6 52 69.2
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 5.7e-14 80.9 39 82.1
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 7.4e-14 80.5 39 84.6
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 1.7e-13 79.3 42 76.2
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 9.1e-12 73.6 51 64.7
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 4.5e-11 71.2 50 58.0
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 7.7e-11 70.5 49 57.1
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 3.8e-10 68.2 40 70.0
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 1.6e-08 62.8 30 86.7
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 6.1e-08 60.8 50 56.0
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 6.7e-07 57.4 90 34.4
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.1e-06 56.6 80 37.5
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 1.5e-06 56.2 80 36.2
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 2.0e-06 55.8 80 37.5
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 2.0e-06 55.8 93 34.4
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 5.7e-06 54.3 80 33.8
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 5.7e-06 54.3 79 32.9
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 5.7e-06 54.3 80 35.0
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 5.7e-06 54.3 80 35.0
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 5.7e-06 54.3 80 35.0
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 7.4e-06 53.9 78 34.6
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 7.4e-06 53.9 79 34.2
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 9.7e-06 53.5 80 33.8
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 9.7e-06 53.5 80 35.0
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 9.7e-06 53.5 80 35.0
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 9.7e-06 53.5 80 33.8
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 9.7e-06 53.5 80 35.0
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 9.7e-06 53.5 87 33.3


User provided reference genes

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