Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 5.9e-183 644.0 322 100.0
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 4.1e-176 621.3 322 95.3
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 6.2e-156 554.3 281 97.5
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 3.8e-121 438.7 324 67.6
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 1.2e-119 433.7 325 69.8
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 2.3e-118 429.5 325 65.8
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 3.9e-118 428.7 325 66.8
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 5.1e-118 428.3 332 68.7
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 6.7e-118 427.9 325 66.5
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 8.7e-118 427.6 325 67.1
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 8.7e-118 427.6 325 66.8
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.9e-117 426.4 325 68.0
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 1.9e-117 426.4 327 66.7
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 2.5e-117 426.0 325 66.8
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 5.7e-117 424.9 326 67.5
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 7.4e-117 424.5 325 67.7
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 1.3e-116 423.7 325 66.8
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 8.2e-116 421.0 325 67.1
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 4.1e-115 418.7 325 67.1
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 5.3e-115 418.3 328 64.3
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 2.0e-114 416.4 326 65.6
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 3.4e-114 415.6 325 64.3
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 5.9e-114 414.8 326 65.3
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 7.7e-114 414.5 326 64.4
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 7.7e-114 414.5 325 64.3
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 2.2e-113 412.9 325 63.1
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 2.9e-113 412.5 327 65.4
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 2.9e-113 412.5 300 68.0
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 8.5e-113 411.0 325 64.3
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 1.1e-112 410.6 329 64.4
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.9e-112 409.8 325 64.0
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.9e-112 409.8 325 64.0
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 4.2e-112 408.7 339 63.4
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 7.2e-112 407.9 325 62.5
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 9.4e-112 407.5 325 63.4
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.7e-111 406.0 325 63.4
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 6.1e-111 404.8 315 64.8
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 1.0e-110 404.1 325 62.8
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.0e-110 404.1 325 63.1
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 1.8e-110 403.3 325 62.5
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 1.1e-109 400.6 306 64.4
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.5e-109 400.2 325 62.8
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 2.0e-109 399.8 325 62.5
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 2.5e-109 399.4 326 61.0
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 3.3e-109 399.1 326 63.5
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 5.7e-109 398.3 326 62.0
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 7.4e-109 397.9 324 64.5
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 9.7e-109 397.5 308 66.6
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 2.2e-108 396.4 326 61.7
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 2.8e-108 396.0 325 61.8
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 3.7e-108 395.6 325 61.2
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 3.7e-108 395.6 326 61.0
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 3.7e-108 395.6 315 62.9
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 4.8e-108 395.2 325 62.5
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.4e-107 393.7 325 62.2
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 1.8e-107 393.3 325 62.2
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 1.8e-107 393.3 326 61.0
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 2.4e-107 392.9 325 63.4
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 4.1e-107 392.1 292 65.1
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 2.0e-106 389.8 365 56.4
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 2.6e-106 389.4 325 63.1
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 4.5e-106 388.7 325 60.9
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 1.0e-105 387.5 339 59.6
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 1.3e-105 387.1 325 60.3
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 2.2e-105 386.3 209 90.9
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 1.1e-104 384.0 326 61.3
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 1.1e-104 384.0 325 61.8
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 1.9e-104 383.3 325 60.3
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 4.2e-104 382.1 325 60.0
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 6.1e-103 378.3 343 59.8
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 7.9e-103 377.9 394 53.0
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 1.8e-102 376.7 318 60.4
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 1.8e-102 376.7 327 59.6
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 3.9e-102 375.6 325 60.6
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 3.9e-102 375.6 326 61.3
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 3.9e-102 375.6 325 60.0
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 3.9e-102 375.6 307 63.2
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 3.9e-102 375.6 362 54.7
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 5.1e-102 375.2 287 62.7
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 2.0e-101 373.2 324 58.0
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 2.0e-101 373.2 325 59.4
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 3.3e-101 372.5 325 59.4
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 7.4e-101 371.3 381 53.5
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 9.7e-101 370.9 325 60.3
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 2.8e-100 369.4 327 58.1
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 6.3e-100 368.2 325 59.1
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 3.1e-99 365.9 326 60.1
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 3.1e-99 365.9 326 60.1
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 4.1e-99 365.5 335 58.8
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 1.2e-98 364.0 335 58.2
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 1.0e-97 360.9 326 58.0
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 2.2e-97 359.8 326 58.9
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 6.5e-97 358.2 309 59.2
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 1.5e-96 357.1 325 56.3
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 3.2e-96 355.9 351 54.7
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 3.2e-96 355.9 366 53.8
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 7.2e-96 354.8 327 57.5
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 2.1e-95 353.2 327 56.9
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 8.0e-95 351.3 361 54.6
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 4.0e-94 349.0 326 54.9
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 2.0e-93 346.7 326 57.1
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.6e-93 346.3 326 57.4
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 5.7e-93 345.1 370 52.2
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 5.3e-91 338.6 325 56.0
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 1.7e-89 333.6 347 52.7
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 1.5e-88 330.5 324 56.2
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 1.0e-86 324.3 325 53.8
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 3.0e-86 322.8 287 61.3
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 3.0e-86 322.8 250 64.8
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 1.2e-85 320.9 330 51.2
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 7.5e-85 318.2 306 58.2
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 7.5e-85 318.2 325 50.5
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 4.8e-84 315.5 364 49.2
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 7.2e-80 301.6 276 57.2
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.0e-78 296.2 268 56.0
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 8.8e-78 294.7 325 52.6
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 6.3e-76 288.5 234 61.1
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 9.5e-72 274.6 294 53.1
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 6.8e-70 268.5 287 51.9
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 1.4e-67 260.8 307 47.2
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.8e-67 260.4 325 48.9
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 7.0e-67 258.5 262 54.6
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 9.2e-67 258.1 324 42.6
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 4.3e-64 249.2 324 45.7
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 7.3e-64 248.4 240 57.9
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.5e-58 229.6 172 68.6
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 2.3e-57 226.9 248 49.2
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 8.6e-49 198.4 145 70.3
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 9.5e-48 194.9 175 56.6
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 1.5e-45 187.6 164 58.5
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.5e-45 187.6 152 59.9
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.0e-45 187.2 257 43.6
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 6.4e-44 182.2 165 58.2
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 1.7e-41 174.1 144 62.5
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.1e-40 171.4 153 56.2
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 2.5e-40 170.2 300 36.3
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 3.3e-40 169.9 304 35.5
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.3e-40 169.9 165 57.0
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 6.9e-38 162.2 243 37.0
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 8.9e-38 161.8 128 63.3
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 8.4e-36 155.2 240 37.1
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 2.7e-34 150.2 320 32.8
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 2.5e-32 143.7 116 60.3
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 2.0e-29 134.0 102 59.8
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 1.5e-24 117.9 81 66.7
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 9.6e-24 115.2 120 52.5
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 9.9e-21 105.1 97 56.7
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 2.1e-18 97.4 84 59.5
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 2.1e-18 97.4 88 54.5
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 4.3e-16 89.7 62 79.0
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 7.4e-16 89.0 76 57.9
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 1.6e-15 87.8 76 57.9
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 1.6e-15 87.8 76 57.9
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.5e-13 81.3 78 48.7
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.7e-12 77.8 165 33.3
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 5.5e-11 72.8 62 64.5
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 1.0e-09 68.6 55 69.1
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.5e-08 64.7 56 53.6
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 9.6e-08 62.0 57 56.1


User provided reference genes

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