Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G036390 Cucumis sativus L. HOM05D007316 ORTHO05D009393 8.7e-125 450.3 222 100.0
MELO3C021892.2 Cucumis melo HOM05D007316 ORTHO05D009393 7.5e-68 261.2 153 86.9
ClCG09G016900 Citrullus lanatus HOM05D007316 ORTHO05D009393 4.4e-36 155.6 89 86.5
Sed0015703 Sechium edule HOM05D007316 ORTHO05D009393 1.7e-27 127.1 64 95.3
Potri.004G058400 Populus trichocarpa HOM05D007316 ORTHO05D009393 3.0e-24 116.3 64 85.9
Manes.17G057300 Manihot esculenta HOM05D007316 ORTHO05D009393 4.3e-23 112.5 64 84.4
Ca_09261_v3 Cicer arietinum L. HOM05D007316 ORTHO05D009393 7.3e-23 111.7 64 82.8
Potri.011G067800 Populus trichocarpa HOM05D007316 ORTHO05D009393 9.6e-23 111.3 64 81.2
Phvul.001G220400 Phaseolus vulgaris HOM05D007316 ORTHO05D009393 2.8e-22 109.8 64 82.8
QL09p015786 Quercus lobata HOM05D007316 ORTHO05D009393 4.7e-22 109.0 63 82.5
QL09p023249 Quercus lobata HOM05D007316 ORTHO05D009393 4.7e-22 109.0 63 82.5
Cpa.g.sc233.10 Carica papaya HOM05D007316 ORTHO05D009393 6.2e-22 108.6 65 84.6
GSVIVG01029768001 Vitis vinifera HOM05D007316 ORTHO05D009393 6.2e-22 108.6 64 82.8
Ciclev10023234m.g Citrus clementina HOM05D007316 ORTHO05D009393 8.1e-22 108.2 64 82.8
Atru.chr12.1494 Acer truncatum HOM05D007316 ORTHO05D009393 1.1e-21 107.8 64 82.8
Glyma.19G223500 Glycine max HOM05D007316 ORTHO05D009393 1.1e-21 107.8 64 81.2
FvH4_4g00490 Fragaria vesca HOM05D007316 ORTHO05D009393 1.4e-21 107.5 64 78.1
FAN12G3999 Fragaria x ananassa HOM05D007316 ORTHO05D009393 1.4e-21 107.5 64 78.1
FAN17G1024 Fragaria x ananassa HOM05D007316 ORTHO05D009393 1.4e-21 107.5 64 78.1
FAN22G1131 Fragaria x ananassa HOM05D007316 ORTHO05D009393 1.4e-21 107.5 64 78.1
SalBow3G1440 Salvia bowleyana HOM05D007316 ORTHO05D009393 1.4e-21 107.5 64 79.7
THA.LOC104813939 Tarenaya hassleriana HOM05D007316 ORTHO05D009393 1.4e-21 107.5 64 81.2
RcHm_v2.0_Chr4g0387941 Rosa chinensis HOM05D007316 ORTHO05D009393 1.8e-21 107.1 64 76.6
Duzib106G1284 Durio zibethinus HOM05D007316 ORTHO05D009393 2.4e-21 106.7 64 79.7
Medtr7g111090 Medicago truncatula HOM05D007316 ORTHO05D009393 2.4e-21 106.7 64 79.7
QL02p030600 Quercus lobata HOM05D007316 ORTHO05D009393 2.4e-21 106.7 63 81.0
Duzib128G0483 Durio zibethinus HOM05D007316 ORTHO05D009393 4.0e-21 105.9 64 79.7
Glyma.03G226500 Glycine max HOM05D007316 ORTHO05D009393 4.0e-21 105.9 64 79.7
RcHm_v2.0_Chr4g0385941 Rosa chinensis HOM05D007316 ORTHO05D009393 4.0e-21 105.9 64 76.6
CSS0014503 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 5.2e-21 105.5 61 78.7
CSS0021979 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 5.2e-21 105.5 61 78.7
CANSAT56G2903 Cannabis sativa HOM05D007316 ORTHO05D009393 5.2e-21 105.5 64 81.2
Gohir.D13G105800 Gossypium hirsutum HOM05D007316 ORTHO05D009393 5.2e-21 105.5 64 79.7
RcHm_v2.0_Chr4g0387841 Rosa chinensis HOM05D007316 ORTHO05D009393 6.9e-21 105.1 64 75.0
Eucgr.H00565 Eucalyptus grandis HOM05D007316 ORTHO05D009393 8.9e-21 104.8 64 78.1
Migut.B00683 Erythranthe guttata HOM05D007316 ORTHO05D009393 1.2e-20 104.4 64 78.1
Migut.B00911 Erythranthe guttata HOM05D007316 ORTHO05D009393 1.2e-20 104.4 64 78.1
Cc02_g36870 Coffea canephora HOM05D007316 ORTHO05D009393 1.5e-20 104.0 65 81.5
Thecc.05G261200 Theobroma cacao HOM05D007316 ORTHO05D009393 1.5e-20 104.0 64 79.7
arahy.Tifrunner.gnm1.ann1.AE1MMP Arachis hypogaea HOM05D007316 ORTHO05D009393 2.0e-20 103.6 64 78.1
arahy.Tifrunner.gnm1.ann1.CUXT1U Arachis hypogaea HOM05D007316 ORTHO05D009393 2.0e-20 103.6 64 78.1
Hma1.2p1_0157F.1_g069460 Hydrangea macrophylla HOM05D007316 ORTHO05D009393 2.0e-20 103.6 64 79.7
Lj1g0006735 Lotus japonicus HOM05D007316 ORTHO05D009393 2.6e-20 103.2 63 74.6
A07p29930 Brassica napus HOM05D007316 ORTHO05D009393 3.4e-20 102.8 64 76.6
C06p34200 Brassica napus HOM05D007316 ORTHO05D009393 3.4e-20 102.8 64 76.6
BolC6t38541H Brassica oleracea HOM05D007316 ORTHO05D009393 3.4e-20 102.8 64 76.6
BraA07t30632Z Brassica rapa HOM05D007316 ORTHO05D009393 3.4e-20 102.8 64 76.6
Psat3g015560 Pisum sativum HOM05D007316 ORTHO05D009393 3.4e-20 102.8 64 75.0
Prupe.3G122600 Prunus persica HOM05D007316 ORTHO05D009393 3.4e-20 102.8 64 79.7
CSS0015421 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 7.6e-20 101.7 61 77.0
AL2G32940 Arabidopsis lyrata HOM05D007316 ORTHO05D009393 1.7e-19 100.5 64 75.0
Cfa016046 Carpinus fangiana HOM05D007316 ORTHO05D009393 1.7e-19 100.5 64 75.0
CARHR066170 Cardamine hirsuta HOM05D007316 ORTHO05D009393 2.2e-19 100.1 64 75.0
Sp5g28140 Schrenkiella parvula HOM05D007316 ORTHO05D009393 2.2e-19 100.1 64 73.4
AT1G73177 Arabidopsis thaliana HOM05D007316 ORTHO05D009393 2.9e-19 99.8 64 73.4
Carub.0002s1996 Capsella rubella HOM05D007316 ORTHO05D009393 3.8e-19 99.4 64 73.4
Aa31LG4G3460 Aethionema arabicum HOM05D007316 ORTHO05D009393 4.9e-19 99.0 64 73.4
Peaxi162Scf00071g00128 Petunia axillaris HOM05D007316 ORTHO05D009393 4.9e-19 99.0 61 75.4
Lalb_Chr04g0260251 Lupinus albus HOM05D007316 ORTHO05D009393 1.1e-18 97.8 62 75.8
PGR119G2118 Punica granatum HOM05D007316 ORTHO05D009393 1.1e-18 97.8 64 73.4
CSS0022236 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.4e-18 97.4 61 75.4
Aqoxy7G02856 Aquilegia oxysepala HOM05D007316 ORTHO05D009393 2.4e-18 96.7 67 65.7
MD09G1239400 Malus domestica HOM05D007316 ORTHO05D009393 3.2e-18 96.3 60 76.7
TWI23G0494 Tripterygium wilfordii HOM05D007316 ORTHO05D009393 3.2e-18 96.3 64 67.2
Sopen08g002530 Solanum pennellii HOM05D007316 ORTHO05D009393 5.4e-18 95.5 64 73.4
PGSC0003DMG400026307 Solanum tuberosum HOM05D007316 ORTHO05D009393 9.3e-18 94.7 64 71.9
COL.COLO4_20544 Corchorus olitorius HOM05D007316 ORTHO05D009393 2.7e-17 93.2 65 70.8
HanXRQChr07g0193721 Helianthus annuus HOM05D007316 ORTHO05D009393 4.6e-17 92.4 59 74.6
BcaC08g45665 Brassica carinata HOM05D007316 ORTHO05D009393 6.0e-17 92.0 79 62.0
Lsat_1_v5_gn_9_84180 Lactuca sativa HOM05D007316 ORTHO05D009393 1.3e-16 90.9 60 70.0
Nn7g37509 Nelumbo nucifera HOM05D007316 ORTHO05D009393 1.5e-12 77.4 42 83.3
CsaV3_4G011880 Cucumis sativus L. HOM05D007316 ORTHO05D009393 2.0e-12 77.0 69 63.8
ECA236G4186 Erigeron canadensis HOM05D007316 ORTHO05D009393 2.0e-12 77.0 60 63.3
CSS0028514 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 4.5e-12 75.9 57 63.2
Os07g0633800 Oryza sativa ssp. japonica HOM05D007316 ORTHO05D009393 4.5e-12 75.9 62 54.8
TAR362G0014 Trochodendron aralioides HOM05D007316 ORTHO05D009393 9.9e-12 74.7 43 81.4
Thhalv10019421m.g Eutrema salsugineum HOM05D007316 ORTHO05D009393 1.7e-11 73.9 59 62.7
CSS0008863 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 6.4e-11 72.0 54 68.5
CSS0044079 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 6.4e-11 72.0 54 68.5
CiPaw.05G216300 Carya illinoinensis HOM05D007316 ORTHO05D009393 8.4e-11 71.6 45 75.6
vmacro19806 Vaccinium macrocarpon HOM05D007316 ORTHO05D009393 8.4e-11 71.6 43 79.1
CSS0021742 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.1e-10 71.2 48 68.8
CSS0044918 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.1e-10 71.2 44 72.7
CSS0047183 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.1e-10 71.2 44 72.7
CSS0047605 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.1e-10 71.2 51 64.7
GSVIVG01026029001 Vitis vinifera HOM05D007316 ORTHO05D009393 1.4e-10 70.9 44 72.7
Oeu034759.1 Olea europaea HOM05D007316 ORTHO05D009393 2.4e-10 70.1 44 75.0
CSS0025187 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 9.3e-10 68.2 44 68.2
Gorai.013G118500 Gossypium raimondii HOM05D007316 ORTHO05D009393 1.6e-09 67.4 64 57.8
EL10Ac8g18312 Beta vulgaris HOM05D007316 ORTHO05D009393 4.6e-09 65.9 43 69.8
MBI18_g28941_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D004701 1.8e-08 63.9 43 65.1
Gohir.A13G102600 Gossypium hirsutum HOM05D007316 ORTHO05D009393 3.9e-08 62.8 64 54.7
Actinidia11709 Actinidia chinensis HOM05D007316 ORTHO05D009393 5.1e-08 62.4 34 82.4
Ah.09g230190 Amaranthus hybridus HOM05D007316 ORTHO05D009393 2.5e-07 60.1 43 62.8
Rhsim05G0117300 Rhododendron simsii HOM05D007316 ORTHO05D009393 3.3e-07 59.7 71 49.3
RhsimUnG0015700 Rhododendron simsii HOM05D007316 ORTHO05D009393 3.3e-07 59.7 71 49.3
AUR62021328 Chenopodium quinoa HOM05D007316 ORTHO05D009393 9.6e-07 58.2 43 62.8
CAN.G530.4 Capsicum annuum HOM05D007316 ORTHO05D009393 2.8e-06 56.6 38 68.4


User provided reference genes

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