Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 6.0e-266 920.2 451 100.0
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 5.3e-238 827.4 452 87.8
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 7.7e-229 797.0 412 92.2
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 3.4e-200 701.8 453 74.8
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 1.4e-153 547.0 473 59.0
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 1.2e-152 543.9 481 56.8
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 3.8e-151 538.9 460 56.3
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 3.2e-150 535.8 477 57.7
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 8.7e-148 527.7 459 56.0
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 4.3e-147 525.4 460 55.9
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 7.4e-147 524.6 464 55.6
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.6e-146 523.5 464 55.4
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 4.8e-146 521.9 459 55.8
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 8.1e-146 521.2 459 55.8
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.0e-144 516.5 464 54.7
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 7.6e-144 514.6 451 59.0
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 1.3e-143 513.8 451 58.8
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 1.7e-143 513.5 473 56.0
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 1.1e-142 510.8 460 56.5
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 5.5e-142 508.4 460 55.2
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 3.9e-140 502.3 470 55.3
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 3.3e-139 499.2 470 54.0
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 1.8e-137 493.4 449 55.7
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 5.3e-137 491.9 461 55.1
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 5.3e-137 491.9 461 55.1
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 5.8e-136 488.4 457 53.4
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 8.4e-135 484.6 460 53.3
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 1.9e-134 483.4 461 52.7
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 2.5e-134 483.0 461 53.6
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 3.2e-134 482.6 462 52.2
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 3.2e-134 482.6 461 53.6
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 2.7e-133 479.6 460 53.7
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 3.5e-133 479.2 458 53.1
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 1.0e-132 477.6 461 54.0
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 1.3e-132 477.2 481 52.6
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 1.9e-131 473.4 461 53.1
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 3.3e-131 472.6 457 54.3
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 7.4e-131 471.5 455 53.0
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 7.4e-131 471.5 455 53.0
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 1.4e-129 467.2 371 60.9
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 2.6e-128 463.0 453 53.9
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 3.4e-128 462.6 468 52.4
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 2.9e-127 459.5 458 52.8
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 6.5e-127 458.4 481 51.1
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 2.1e-125 453.4 386 57.0
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 1.0e-124 451.1 455 51.4
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 1.8e-124 450.3 453 50.8
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 3.9e-124 449.1 448 52.7
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 4.3e-123 445.7 390 56.4
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 2.2e-122 443.4 459 51.2
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 4.1e-121 439.1 460 50.2
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 5.3e-121 438.7 450 50.0
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 2.0e-120 436.8 395 55.2
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 4.5e-120 435.6 452 49.1
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 4.5e-120 435.6 453 47.7
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 7.7e-120 434.9 449 51.7
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 5.0e-119 432.2 445 52.1
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 5.5e-118 428.7 456 48.5
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 9.4e-118 427.9 456 47.8
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 1.6e-117 427.2 381 55.9
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 2.7e-117 426.4 453 49.4
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 2.3e-116 423.3 460 48.5
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 3.9e-116 422.5 458 49.3
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 2.6e-115 419.9 443 47.9
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 3.3e-115 419.5 455 49.5
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 3.3e-115 419.5 451 48.6
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 1.3e-114 417.5 452 46.9
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 1.7e-114 417.2 450 48.9
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 6.3e-114 415.2 359 56.0
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 8.2e-114 414.8 450 48.4
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 1.2e-112 411.0 453 49.4
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 5.9e-112 408.7 445 49.7
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 1.3e-111 407.5 452 47.6
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 3.8e-111 406.0 446 49.3
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 1.4e-110 404.1 300 63.0
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 2.5e-110 403.3 492 43.9
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 3.2e-110 402.9 404 51.7
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 1.2e-109 401.0 459 47.9
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 1.6e-109 400.6 445 48.5
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 3.6e-109 399.4 446 48.0
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 4.7e-109 399.1 359 51.8
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 4.7e-109 399.1 449 48.3
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 3.9e-108 396.0 356 54.2
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 1.1e-107 394.4 456 46.5
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 1.5e-107 394.0 453 46.8
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 5.3e-105 385.6 458 46.3
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 9.1e-105 384.8 457 47.9
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 9.1e-105 384.8 483 43.7
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 1.2e-104 384.4 387 50.4
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 3.5e-104 382.9 455 47.7
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 1.0e-103 381.3 388 49.0
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 5.0e-103 379.0 458 44.8
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 6.5e-103 378.6 457 49.0
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 3.2e-102 376.3 457 48.4
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 5.5e-102 375.6 458 46.1
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 4.8e-98 362.5 458 44.8
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 3.1e-97 359.8 364 52.2
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 1.6e-96 357.5 459 44.9
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 3.8e-95 352.8 327 55.7
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 4.2e-94 349.4 545 40.6
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 6.3e-90 335.5 364 49.2
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 8.6e-87 325.1 459 42.9
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.1e-86 324.7 450 41.3
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 1.1e-81 308.1 346 49.7
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 7.0e-81 305.4 425 42.6
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 1.6e-80 304.3 352 47.7
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 4.7e-77 292.7 506 35.4
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.5e-75 287.7 411 39.4
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 2.2e-74 283.9 323 47.4
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 2.4e-73 280.4 261 54.4
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.3e-71 273.9 405 36.5
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 3.1e-68 263.5 491 34.4
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 4.0e-68 263.1 420 35.5
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 3.7e-66 256.5 344 43.3
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 4.6e-64 249.6 548 29.9
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 4.3e-62 243.0 261 49.8
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 4.7e-53 213.0 146 63.7
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 1.5e-51 208.0 415 34.2
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 2.0e-51 207.6 172 59.3
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 2.9e-50 203.8 267 41.9
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 2.3e-47 194.1 504 28.6
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 4.8e-45 186.4 160 55.6
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 3.8e-42 176.8 164 48.8
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 4.3e-38 163.3 251 36.7
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 9.0e-36 155.6 158 46.8
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 5.1e-31 139.8 208 38.9
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 9.0e-28 129.0 88 64.8
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 1.7e-26 124.8 98 60.2
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 2.9e-26 124.0 163 44.8
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.7e-24 117.5 254 29.5
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 5.3e-12 76.6 57 61.4
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 2.2e-10 71.2 54 59.3
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 2.5e-09 67.8 35 85.7
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 2.1e-08 64.7 52 51.9
FvH4_7g33361 Fragaria vesca HOM05D006040 ORTHO05D007134 9.7e-06 55.8 83 43.4


User provided reference genes

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