Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 0.0e+00 1139.4 572 100.0
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 5.6e-301 1036.9 620 85.8
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 3.3e-293 1011.1 557 91.2
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 1.6e-260 902.5 557 82.2
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 2.5e-232 808.9 559 73.5
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 9.1e-227 790.4 520 76.3
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 3.2e-224 781.9 544 72.1
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 1.8e-222 776.2 573 71.2
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 3.8e-209 731.9 559 65.3
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 3.8e-209 731.9 563 65.2
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.5e-208 729.9 559 65.1
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 2.0e-205 719.5 528 67.6
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 2.6e-205 719.2 498 69.7
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 1.7e-204 716.5 529 68.8
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 2.9e-204 715.7 562 63.2
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 3.0e-201 705.7 528 65.9
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 5.0e-201 704.9 558 63.1
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 6.6e-201 704.5 568 63.4
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 1.5e-200 703.4 567 62.6
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 3.3e-200 702.2 574 62.5
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 1.2e-199 700.3 528 66.3
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 2.8e-199 699.1 541 64.7
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 3.6e-199 698.7 553 62.2
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 2.3e-198 696.0 552 63.6
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 4.0e-198 695.3 562 62.3
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 6.8e-198 694.5 519 66.7
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.5e-197 693.3 541 64.5
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 2.0e-197 693.0 541 64.5
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 3.4e-197 692.2 579 59.6
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 5.8e-197 691.4 492 67.5
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 9.8e-197 690.6 492 66.7
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 2.9e-196 689.1 521 66.4
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 4.9e-196 688.3 546 63.2
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 8.3e-196 687.6 535 65.0
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 8.3e-196 687.6 565 62.3
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 3.2e-195 685.6 563 60.4
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 7.0e-195 684.5 471 70.1
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.6e-194 683.3 592 58.6
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 1.6e-194 683.3 533 63.2
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 1.3e-193 680.2 548 63.7
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 8.6e-193 677.6 572 61.7
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 2.5e-192 676.0 558 62.7
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.6e-191 673.3 500 66.4
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 4.7e-191 671.8 560 59.8
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 4.7e-191 671.8 494 66.0
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 1.1e-190 670.6 576 59.0
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 1.8e-190 669.8 496 64.7
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 4.0e-190 668.7 496 65.3
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.0e-189 666.4 525 63.0
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 5.8e-189 664.8 500 65.0
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 7.5e-189 664.5 495 64.8
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 7.5e-189 664.5 490 65.7
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 9.9e-189 664.1 534 61.8
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.7e-188 663.3 495 64.8
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 2.9e-188 662.5 561 61.0
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 3.7e-188 662.1 494 65.4
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 4.1e-187 658.7 509 63.1
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 2.7e-186 656.0 545 60.2
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 4.6e-186 655.2 517 64.6
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 1.7e-185 653.3 566 58.5
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 2.3e-185 652.9 495 63.6
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 3.6e-183 645.6 489 64.8
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 2.4e-182 642.9 507 61.7
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 5.2e-182 641.7 561 57.9
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 2.0e-181 639.8 483 64.2
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 2.6e-181 639.4 551 59.7
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.4e-179 633.6 531 60.3
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 1.0e-177 627.5 495 61.8
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 1.7e-177 626.7 540 59.1
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 5.1e-177 625.2 504 61.1
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 8.7e-177 624.4 476 64.1
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 5.3e-174 615.1 552 56.5
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 2.2e-172 609.8 589 54.0
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 1.2e-170 604.0 586 54.1
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 3.5e-170 602.4 485 61.9
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 1.0e-169 600.9 485 61.9
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 3.0e-169 599.4 493 60.9
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 1.5e-168 597.0 485 60.0
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 1.9e-168 596.7 497 60.8
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 5.6e-168 595.1 419 68.5
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.4e-163 580.5 500 57.4
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.9e-163 580.1 544 55.0
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 3.5e-162 575.9 520 55.8
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 4.6e-162 575.5 574 53.0
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 6.0e-162 575.1 501 55.7
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 1.0e-161 574.3 488 58.8
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.3e-161 573.9 500 58.6
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.4e-158 563.1 515 55.3
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 4.0e-158 562.4 488 56.8
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 3.4e-157 559.3 512 54.5
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.5e-157 558.9 529 53.9
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 5.8e-157 558.5 325 84.3
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 9.9e-157 557.8 545 54.9
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 1.9e-155 553.5 546 54.9
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 2.1e-154 550.1 512 52.7
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 3.5e-154 549.3 469 58.0
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 3.7e-151 539.3 455 59.6
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 8.2e-151 538.1 512 53.5
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.0e-148 531.2 455 58.5
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.0e-148 531.2 497 53.9
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.1e-146 523.5 449 59.9
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 2.2e-143 513.5 487 53.8
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 6.3e-143 511.9 494 53.0
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 2.4e-142 510.0 454 60.6
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 4.5e-141 505.8 508 55.5
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 7.9e-138 495.0 494 52.0
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 3.0e-137 493.0 394 61.2
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 3.9e-137 492.7 480 52.9
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 2.5e-136 490.0 500 49.6
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 8.2e-135 485.0 488 51.0
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 4.1e-134 482.6 536 49.6
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 6.9e-134 481.9 505 48.5
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 1.2e-133 481.1 490 52.0
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 2.5e-131 473.4 510 47.5
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 2.2e-127 460.3 396 56.3
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 4.1e-126 456.1 386 57.8
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 1.9e-123 447.2 328 66.5
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 6.5e-116 422.2 457 49.7
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.9e-115 420.6 343 60.9
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 1.0e-113 414.8 321 63.9
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 6.8e-113 412.1 393 56.0
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 7.5e-112 408.7 288 68.4
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.2e-109 401.4 340 60.0
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 2.7e-106 390.2 331 58.6
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 1.4e-105 387.9 332 57.8
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 5.7e-104 382.5 415 51.1
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 4.1e-102 376.3 642 35.7
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.5e-101 373.2 338 54.4
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 8.9e-97 358.6 442 46.8
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 3.5e-85 320.1 449 44.1
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 3.0e-84 317.0 192 82.8
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.8e-81 307.8 226 61.5
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 3.2e-78 297.0 217 60.8
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 5.1e-76 289.7 275 52.4
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 1.4e-73 281.6 611 31.9
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.0e-68 263.8 346 41.9
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 1.2e-66 258.5 501 33.5
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 4.7e-66 256.5 221 59.3
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.8e-65 254.6 221 59.3
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 3.8e-63 246.9 265 47.9
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 4.9e-63 246.5 154 74.0
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 3.5e-61 240.4 163 69.3
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 4.6e-61 240.0 159 71.7
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 6.2e-58 229.6 145 73.1
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 7.9e-53 212.6 135 74.1
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.1e-50 204.5 196 50.0
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 6.2e-50 203.0 145 65.5
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.3e-44 185.3 146 61.6
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 1.9e-43 181.4 186 54.8
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.1e-41 175.6 128 65.6
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.9e-38 164.9 117 65.8
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.3e-35 153.7 172 41.3
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.8e-34 151.0 107 65.4
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.1e-33 147.5 197 39.1
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 4.1e-33 147.1 196 43.4
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 5.3e-33 146.7 140 56.4
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.1e-21 108.2 123 44.7
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 3.0e-20 104.4 76 56.6
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 5.0e-15 87.0 67 56.7
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.1e-14 85.9 73 54.8
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 3.6e-13 80.9 73 54.8
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 5.9e-08 63.5 54 53.7


User provided reference genes

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