Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G034790 Cucumis sativus L. HOM05D000074 ORTHO05D001793 2.3e-72 275.4 131 100.0
MELO3C034954.2 Cucumis melo HOM05D000074 ORTHO05D001793 5.1e-16 88.2 45 84.4
MELO3C034955.2 Cucumis melo HOM05D000074 ORTHO05D001793 1.9e-15 86.3 45 82.2
CsaV3_2G034780 Cucumis sativus L. HOM05D000074 ORTHO05D001793 1.9e-15 86.3 45 80.0
ClCG02G008930 Citrullus lanatus HOM05D000074 ORTHO05D001793 4.3e-15 85.1 45 82.2
ClCG02G008980 Citrullus lanatus HOM05D000074 ORTHO05D001793 4.3e-15 85.1 102 43.1
CsaV3_2G034770 Cucumis sativus L. HOM05D000074 ORTHO05D001793 4.3e-15 85.1 45 80.0
CsaV3_2G034740 Cucumis sativus L. HOM05D000074 ORTHO05D001793 7.4e-15 84.3 45 80.0
MELO3C019293.2 Cucumis melo HOM05D000074 ORTHO05D001793 9.6e-15 84.0 45 77.8
Sed0001304 Sechium edule HOM05D000074 ORTHO05D001793 3.4e-12 75.5 46 65.2
Lj1A770G42 Lonicera japonica HOM05D000074 ORTHO05D001793 1.0e-11 73.9 45 66.7
Lj1A773G36 Lonicera japonica HOM05D000074 ORTHO05D001793 1.0e-11 73.9 45 66.7
Ciclev10027629m.g Citrus clementina HOM05D000074 ORTHO05D001793 2.2e-11 72.8 45 64.4
Potri.002G227300 Populus trichocarpa HOM05D000074 ORTHO05D001793 2.9e-11 72.4 45 66.7
QL08p031824 Quercus lobata HOM05D000074 ORTHO05D001793 3.8e-11 72.0 49 61.2
QL08p032020 Quercus lobata HOM05D000074 ORTHO05D001793 3.8e-11 72.0 49 61.2
QL08p032066 Quercus lobata HOM05D000074 ORTHO05D001793 3.8e-11 72.0 60 53.3
Ciclev10014586m.g Citrus clementina HOM05D000074 ORTHO05D001793 5.0e-11 71.6 45 62.2
Glyma.12G191700 Glycine max HOM05D000074 ORTHO05D001793 5.0e-11 71.6 41 68.3
Sabra02G0173900 Salix brachista HOM05D000074 ORTHO05D001793 5.0e-11 71.6 45 64.4
Sed0022836 Sechium edule HOM05D000074 ORTHO05D001793 5.0e-11 71.6 45 66.7
Phvul.005G116501 Phaseolus vulgaris HOM05D000074 ORTHO05D001793 8.4e-11 70.9 41 68.3
Phvul.005G117833 Phaseolus vulgaris HOM05D000074 ORTHO05D001793 8.4e-11 70.9 41 68.3
QL08p031759 Quercus lobata HOM05D000074 ORTHO05D001793 8.4e-11 70.9 49 55.1
PGR142G1995 Punica granatum HOM05D000074 ORTHO05D001793 1.1e-10 70.5 96 36.5
Cfa014352 Carpinus fangiana HOM05D000074 ORTHO05D001793 1.4e-10 70.1 48 56.2
Phvul.005G116551 Phaseolus vulgaris HOM05D000074 ORTHO05D001793 1.4e-10 70.1 41 68.3
Cfa014347 Carpinus fangiana HOM05D000074 ORTHO05D001793 1.9e-10 69.7 49 55.1
Phvul.005G116700 Phaseolus vulgaris HOM05D000074 ORTHO05D001793 1.9e-10 69.7 52 55.8
Glyma.12G191500 Glycine max HOM05D000074 ORTHO05D001793 2.5e-10 69.3 52 53.8
Cfa014345 Carpinus fangiana HOM05D000074 ORTHO05D001793 3.2e-10 68.9 49 53.1
MD17G1099600 Malus domestica HOM05D000074 ORTHO05D001793 3.2e-10 68.9 45 60.0
Haze_12806 Corylus avellana HOM05D000074 ORTHO05D001793 4.2e-10 68.6 49 51.0
Medtr2g087900 Medicago truncatula HOM05D000074 ORTHO05D001793 4.2e-10 68.6 52 53.8
Actinidia09740 Actinidia chinensis HOM05D000074 ORTHO05D001793 5.5e-10 68.2 48 54.2
Cfa014353 Carpinus fangiana HOM05D000074 ORTHO05D001793 5.5e-10 68.2 48 56.2
DCAR_019754 Daucus carota HOM05D000074 ORTHO05D001793 7.2e-10 67.8 45 60.0
QL08p031972 Quercus lobata HOM05D000074 ORTHO05D001793 7.2e-10 67.8 49 53.1
Psat5g263280 Pisum sativum HOM05D000074 ORTHO05D001793 9.3e-10 67.4 44 59.1
PGR142G2339 Punica granatum HOM05D000074 ORTHO05D001793 9.3e-10 67.4 45 57.8
LjContig00274_ERROPOS1100000g0012497 Lotus japonicus HOM05D000074 ORTHO05D001793 1.6e-09 66.6 41 63.4
Thecc.01G176900 Theobroma cacao HOM05D000074 ORTHO05D001793 1.6e-09 66.6 45 57.8
GSVIVG01030464001 Vitis vinifera HOM05D000074 ORTHO05D001793 1.6e-09 66.6 61 52.5
Haze_12805 Corylus avellana HOM05D000074 ORTHO05D001793 2.1e-09 66.2 48 54.2
vmacro12187 Vaccinium macrocarpon HOM05D000074 ORTHO05D001793 2.1e-09 66.2 45 57.8
GSVIVG01030467001 Vitis vinifera HOM05D000074 ORTHO05D001793 2.1e-09 66.2 45 53.3
Carub.0004s1388 Capsella rubella HOM05D000074 ORTHO05D001793 2.7e-09 65.9 39 66.7
COL.COLO4_21358 Corchorus olitorius HOM05D000074 ORTHO05D001793 2.7e-09 65.9 45 57.8
GSVIVG01030462001 Vitis vinifera HOM05D000074 ORTHO05D001793 2.7e-09 65.9 45 51.1
GSVIVG01030468001 Vitis vinifera HOM05D000074 ORTHO05D001793 2.7e-09 65.9 45 53.3
arahy.Tifrunner.gnm1.ann1.S6SHXY Arachis hypogaea HOM05D000074 ORTHO05D001793 4.6e-09 65.1 41 63.4
DCAR_012027 Daucus carota HOM05D000074 ORTHO05D001793 4.6e-09 65.1 45 55.6
PGR142G2826 Punica granatum HOM05D000074 ORTHO05D001793 4.6e-09 65.1 45 53.3
RhsimUnG0010800 Rhododendron simsii HOM05D000074 ORTHO05D001793 4.6e-09 65.1 45 55.6
CANSAT64G1308 Cannabis sativa HOM05D000074 ORTHO05D001793 6.1e-09 64.7 45 55.6
CiPaw.04G113800 Carya illinoinensis HOM05D000074 ORTHO05D001793 6.1e-09 64.7 45 57.8
Dinv39726 Davidia involucrata HOM05D000074 ORTHO05D001793 6.1e-09 64.7 45 55.6
Eucgr.K00782 Eucalyptus grandis HOM05D000074 ORTHO05D001793 6.1e-09 64.7 45 60.0
RcHm_v2.0_Chr2g0158731 Rosa chinensis HOM05D000074 ORTHO05D001793 6.1e-09 64.7 49 51.0
Sed0011078 Sechium edule HOM05D000074 ORTHO05D001793 6.1e-09 64.7 45 55.6
VMungo1080G1050 Vigna mungo HOM05D000074 ORTHO05D001793 6.1e-09 64.7 41 61.0
arahy.Tifrunner.gnm1.ann1.F8E2AM Arachis hypogaea HOM05D000074 ORTHO05D001793 7.9e-09 64.3 41 58.5
Carub.0004s1387 Capsella rubella HOM05D000074 ORTHO05D001793 7.9e-09 64.3 41 63.4
CARHR126380 Cardamine hirsuta HOM05D000074 ORTHO05D001793 7.9e-09 64.3 41 61.0
Cfa014349 Carpinus fangiana HOM05D000074 ORTHO05D001793 7.9e-09 64.3 49 51.0
CiPaw.04G113700 Carya illinoinensis HOM05D000074 ORTHO05D001793 7.9e-09 64.3 45 55.6
FvH4_6g42800 Fragaria vesca HOM05D000074 ORTHO05D001793 7.9e-09 64.3 49 49.0
Lalb_Chr24g0393301 Lupinus albus HOM05D000074 ORTHO05D001793 7.9e-09 64.3 50 52.0
Cfa014348 Carpinus fangiana HOM05D000074 ORTHO05D001793 1.0e-08 63.9 49 51.0
Cfa014351 Carpinus fangiana HOM05D000074 ORTHO05D001793 1.0e-08 63.9 49 53.1
DCAR_021159 Daucus carota HOM05D000074 ORTHO05D001793 1.0e-08 63.9 45 57.8
Thhalv10016289m.g Eutrema salsugineum HOM05D000074 ORTHO05D001793 1.0e-08 63.9 41 63.4
Sc06g0009570 Simmondsia chinensis HOM05D000074 ORTHO05D001793 1.0e-08 63.9 41 58.5
TPR.G29343 Trifolium pratense HOM05D000074 ORTHO05D001793 1.0e-08 63.9 41 61.0
RcHm_v2.0_Chr2g0158741 Rosa chinensis HOM05D000074 ORTHO05D001793 1.3e-08 63.5 54 50.0
TAR725G0004 Trochodendron aralioides HOM05D000074 ORTHO05D001793 1.3e-08 63.5 45 55.6
arahy.Tifrunner.gnm1.ann1.KGFT34 Arachis hypogaea HOM05D000074 ORTHO05D001793 1.8e-08 63.2 41 58.5
Prupe.3G214200 Prunus persica HOM05D000074 ORTHO05D001793 1.8e-08 63.2 49 51.0
Actinidia25605 Actinidia chinensis HOM05D000074 ORTHO05D001793 2.3e-08 62.8 48 50.0
Eucgr.K00779 Eucalyptus grandis HOM05D000074 ORTHO05D001793 2.3e-08 62.8 45 55.6
FAN02G4047 Fragaria x ananassa HOM05D000074 ORTHO05D001793 2.3e-08 62.8 45 51.1
FAN09G3492 Fragaria x ananassa HOM05D000074 ORTHO05D001793 2.3e-08 62.8 49 46.9
MD17G1099800 Malus domestica HOM05D000074 ORTHO05D001793 2.3e-08 62.8 45 55.6
CSS0006219 Camellia sinensis var. sinensis HOM05D000074 ORTHO05D001793 3.0e-08 62.4 45 57.8
DCAR_012026 Daucus carota HOM05D000074 ORTHO05D001793 3.0e-08 62.4 45 53.3
Manes.13G069350 Manihot esculenta HOM05D000074 ORTHO05D001793 3.0e-08 62.4 45 53.3
CSS0005626 Camellia sinensis var. sinensis HOM05D000074 ORTHO05D001793 3.9e-08 62.0 45 55.6
CSS0015423 Camellia sinensis var. sinensis HOM05D000074 ORTHO05D001793 3.9e-08 62.0 45 55.6
CSS0024869 Camellia sinensis var. sinensis HOM05D000074 ORTHO05D001793 3.9e-08 62.0 45 53.3
CSS0031882 Camellia sinensis var. sinensis HOM05D000074 ORTHO05D001793 3.9e-08 62.0 45 55.6
CiPaw.04G113600 Carya illinoinensis HOM05D000074 ORTHO05D001793 3.9e-08 62.0 45 55.6
ECA236G1388 Erigeron canadensis HOM05D000074 ORTHO05D001793 3.9e-08 62.0 48 50.0
Potri.014G155300 Populus trichocarpa HOM05D000074 ORTHO05D001793 3.9e-08 62.0 45 60.0
AL4G27920 Arabidopsis lyrata HOM05D000074 ORTHO05D001793 6.7e-08 61.2 41 58.5
COL.COLO4_06582 Corchorus olitorius HOM05D000074 ORTHO05D001793 6.7e-08 61.2 46 50.0
Sp4g14880 Schrenkiella parvula HOM05D000074 ORTHO05D001793 6.7e-08 61.2 42 59.5
CiPaw.04G113900 Carya illinoinensis HOM05D000074 ORTHO05D001793 8.7e-08 60.8 45 55.6
GSVIVG01030461001 Vitis vinifera HOM05D000074 ORTHO05D001793 8.7e-08 60.8 60 45.0
Aa31LG5G4770 Aethionema arabicum HOM05D000074 ORTHO05D001793 1.1e-07 60.5 41 61.0
Aqoxy1G03399 Aquilegia oxysepala HOM05D000074 ORTHO05D001793 1.1e-07 60.5 48 47.9
FvH4_6g42780 Fragaria vesca HOM05D000074 ORTHO05D001793 1.1e-07 60.5 55 47.3
FAN05G2703 Fragaria x ananassa HOM05D000074 ORTHO05D001793 1.1e-07 60.5 55 47.3
GSVIVG01030458001 Vitis vinifera HOM05D000074 ORTHO05D001793 1.1e-07 60.5 45 51.1
AT2G32530 Arabidopsis thaliana HOM05D000074 ORTHO05D001793 1.5e-07 60.1 41 56.1
AT2G32540 Arabidopsis thaliana HOM05D000074 ORTHO05D001793 1.5e-07 60.1 41 58.5
Cfa014356 Carpinus fangiana HOM05D000074 ORTHO05D001793 1.5e-07 60.1 48 47.9
ECA236G3176 Erigeron canadensis HOM05D000074 ORTHO05D001793 1.5e-07 60.1 43 55.8
FAN14G3470 Fragaria x ananassa HOM05D000074 ORTHO05D001793 1.5e-07 60.1 55 47.3
GSVIVG01030456001 Vitis vinifera HOM05D000074 ORTHO05D001793 1.5e-07 60.1 45 48.9
TAR626G1602 Trochodendron aralioides HOM05D000074 ORTHO05D001793 1.9e-07 59.7 45 51.1
CANSAT64G1216 Cannabis sativa HOM05D000074 ORTHO05D001793 2.5e-07 59.3 48 52.1
CAN.G1089.27 Capsicum annuum HOM05D000074 ORTHO05D001793 2.5e-07 59.3 47 55.3
Psat5g262240 Pisum sativum HOM05D000074 ORTHO05D001793 2.5e-07 59.3 41 53.7
AL4G27935 Arabidopsis lyrata HOM05D000074 ORTHO05D001793 3.3e-07 58.9 41 56.1
Eucgr.K00781 Eucalyptus grandis HOM05D000074 ORTHO05D001793 3.3e-07 58.9 41 61.0
Lj3g0002889 Lotus japonicus HOM05D000074 ORTHO05D001793 3.3e-07 58.9 69 40.6
Peaxi162Scf00007g00222 Petunia axillaris HOM05D000074 ORTHO05D001793 3.3e-07 58.9 45 51.1
Thecc.01G176800 Theobroma cacao HOM05D000074 ORTHO05D001793 3.3e-07 58.9 45 51.1
A04p25000 Brassica napus HOM05D000074 ORTHO05D001793 4.3e-07 58.5 41 56.1
Cpa.g.sc10.104 Carica papaya HOM05D000074 ORTHO05D001793 4.3e-07 58.5 42 54.8
Medtr2g087950 Medicago truncatula HOM05D000074 ORTHO05D001793 4.3e-07 58.5 41 51.2
CiPaw.04G114000 Carya illinoinensis HOM05D000074 ORTHO05D001793 5.7e-07 58.2 49 46.9
COL.COLO4_20023 Corchorus olitorius HOM05D000074 ORTHO05D001793 5.7e-07 58.2 45 48.9
COL.COLO4_20024 Corchorus olitorius HOM05D000074 ORTHO05D001793 5.7e-07 58.2 45 53.3
HanXRQChr04g0127071 Helianthus annuus HOM05D000074 ORTHO05D001793 5.7e-07 58.2 46 50.0
BcaC02g07912 Brassica carinata HOM05D000074 ORTHO05D001793 7.4e-07 57.8 41 58.5
C04p62020 Brassica napus HOM05D000074 ORTHO05D001793 7.4e-07 57.8 41 53.7
C04p62040 Brassica napus HOM05D000074 ORTHO05D001793 7.4e-07 57.8 41 58.5
CARHR126390 Cardamine hirsuta HOM05D000074 ORTHO05D001793 7.4e-07 57.8 41 53.7
FAN14G5945 Fragaria x ananassa HOM05D000074 ORTHO05D001793 7.4e-07 57.8 49 44.9
HanXRQChr04g0127021 Helianthus annuus HOM05D000074 ORTHO05D001793 7.4e-07 57.8 46 52.2
Lj3g0016012 Lotus japonicus HOM05D000074 ORTHO05D001793 7.4e-07 57.8 39 56.4
Sed0003225 Sechium edule HOM05D000074 ORTHO05D001793 7.4e-07 57.8 45 51.1
BcaB06g28601 Brassica carinata HOM05D000074 ORTHO05D001793 9.7e-07 57.4 41 53.7
Eucgr.K00778 Eucalyptus grandis HOM05D000074 ORTHO05D001793 9.7e-07 57.4 45 53.3
PGSC0003DMG400017110 Solanum tuberosum HOM05D000074 ORTHO05D001793 9.7e-07 57.4 45 55.6
TWI36G0324 Tripterygium wilfordii HOM05D000074 ORTHO05D001793 9.7e-07 57.4 45 51.1
BcaC02g07913 Brassica carinata HOM05D000074 ORTHO05D001793 1.3e-06 57.0 41 53.7
C04p61950 Brassica napus HOM05D000074 ORTHO05D001793 1.3e-06 57.0 41 53.7
C04p61980 Brassica napus HOM05D000074 ORTHO05D001793 1.3e-06 57.0 41 53.7
C04p62030 Brassica napus HOM05D000074 ORTHO05D001793 1.3e-06 57.0 41 53.7
BolC4t27679H Brassica oleracea HOM05D000074 ORTHO05D001793 1.3e-06 57.0 41 53.7
BolC4t27680H Brassica oleracea HOM05D000074 ORTHO05D001793 1.3e-06 57.0 41 53.7
COL.COLO4_06580 Corchorus olitorius HOM05D000074 ORTHO05D001793 1.3e-06 57.0 45 51.1
HanXRQChr04g0127031 Helianthus annuus HOM05D000074 ORTHO05D001793 1.3e-06 57.0 46 52.2
CARHR126370 Cardamine hirsuta HOM05D000074 ORTHO05D001793 1.6e-06 56.6 41 53.7
COL.COLO4_20025 Corchorus olitorius HOM05D000074 ORTHO05D001793 1.6e-06 56.6 51 51.0
MD09G1072200 Malus domestica HOM05D000074 ORTHO05D001793 1.6e-06 56.6 49 46.9
RcHm_v2.0_Chr2g0158771 Rosa chinensis HOM05D000074 ORTHO05D001793 1.6e-06 56.6 49 46.9
Solyc07g051820.3 Solanum lycopersicum HOM05D000074 ORTHO05D001793 1.6e-06 56.6 45 55.6
Sopen07g025410 Solanum pennellii HOM05D000074 ORTHO05D001793 1.6e-06 56.6 45 55.6
CARHR126400 Cardamine hirsuta HOM05D000074 ORTHO05D001793 2.2e-06 56.2 41 56.1
Phvul.011G101500 Phaseolus vulgaris HOM05D000074 ORTHO05D001793 2.2e-06 56.2 39 53.8
Cfa014354 Carpinus fangiana HOM05D000074 ORTHO05D001793 2.8e-06 55.8 43 51.2
MELO3C019295.2 Cucumis melo HOM05D000074 ORTHO05D001793 2.8e-06 55.8 51 47.1
Glyma.12G096900 Glycine max HOM05D000074 ORTHO05D001793 2.8e-06 55.8 38 52.6
HanXRQChr04g0127001 Helianthus annuus HOM05D000074 ORTHO05D001793 3.7e-06 55.5 43 51.2
Cfa014355 Carpinus fangiana HOM05D000074 ORTHO05D001793 4.8e-06 55.1 48 47.9
CsaV3_2G034720 Cucumis sativus L. HOM05D000074 ORTHO05D001793 4.8e-06 55.1 51 47.1
C04p62050 Brassica napus HOM05D000074 ORTHO05D001793 6.3e-06 54.7 41 53.7
FAN02G2248 Fragaria x ananassa HOM05D000074 ORTHO05D001793 6.3e-06 54.7 47 46.8
Os10g0341700 Oryza sativa ssp. japonica HOM05D000074 ORTHO05D001793 6.3e-06 54.7 49 49.0
Thhalv10017940m.g Eutrema salsugineum HOM05D000074 ORTHO05D001793 8.2e-06 54.3 41 53.7
HanXRQChr04g0127011 Helianthus annuus HOM05D000074 ORTHO05D001793 8.2e-06 54.3 46 50.0


User provided reference genes

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