Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 1.9e-273 945.3 498 100.0
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 1.1e-241 839.7 508 88.2
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 8.8e-210 733.8 499 80.8
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 5.4e-191 671.4 510 70.8
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 4.9e-176 621.7 506 67.0
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 1.3e-107 394.4 516 46.9
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 1.1e-106 391.3 513 46.4
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 1.4e-101 374.4 514 45.7
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 1.4e-93 347.8 513 43.3
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 1.1e-90 338.2 536 42.4
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 1.3e-88 331.3 514 40.9
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 3.0e-85 320.1 510 42.0
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 7.5e-84 315.5 517 41.2
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 8.3e-83 312.0 521 40.9
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 4.1e-82 309.7 461 43.8
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 5.0e-80 302.8 532 41.2
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 2.5e-79 300.4 444 43.5
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 8.0e-78 295.4 537 41.0
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 8.0e-78 295.4 513 38.4
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 8.9e-77 292.0 519 38.3
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 8.3e-75 285.4 510 42.2
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 4.1e-74 283.1 633 36.0
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.2e-73 281.6 643 34.7
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 2.7e-73 280.4 501 38.7
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 1.7e-72 277.7 643 34.4
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 1.7e-72 277.7 519 38.5
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 3.0e-72 276.9 655 34.2
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 3.0e-72 276.9 509 39.3
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 5.0e-72 276.2 645 34.1
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 1.9e-71 274.2 647 33.2
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 7.3e-71 272.3 513 35.7
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 6.2e-70 269.2 643 34.2
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 8.0e-70 268.9 643 33.1
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 9.2e-66 255.4 424 42.5
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 3.0e-64 250.4 390 42.1
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 5.0e-64 249.6 521 37.2
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 9.5e-63 245.4 391 41.9
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 4.7e-62 243.0 495 36.2
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 8.1e-62 242.3 508 35.6
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 1.8e-61 241.1 424 39.9
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 5.2e-61 239.6 496 39.7
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 8.9e-61 238.8 428 39.7
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 1.5e-60 238.0 494 36.6
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 2.2e-59 234.2 388 41.0
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 1.0e-56 225.3 235 51.9
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 8.6e-56 222.2 390 40.5
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 1.5e-55 221.5 613 29.9
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 1.9e-55 221.1 594 31.6
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 4.3e-55 219.9 589 31.4
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 9.5e-55 218.8 607 32.0
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 9.5e-55 218.8 451 34.6
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 1.2e-54 218.4 594 31.5
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 2.8e-54 217.2 340 41.2
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 1.8e-53 214.5 407 38.8
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 2.0e-52 211.1 537 31.7
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 2.6e-52 210.7 302 41.7
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 2.6e-52 210.7 304 41.8
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 2.9e-51 207.2 419 38.2
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 4.9e-51 206.5 558 34.8
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 8.4e-51 205.7 596 31.2
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 3.5e-49 200.3 629 30.4
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 3.5e-49 200.3 460 33.7
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 4.6e-49 199.9 302 43.7
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.9e-47 194.5 434 33.6
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 7.3e-47 192.6 390 33.3
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 8.1e-46 189.1 552 31.9
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 5.2e-45 186.4 724 26.2
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 5.2e-45 186.4 515 31.5
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 8.9e-45 185.7 398 36.9
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 2.6e-44 184.1 189 46.0
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 3.4e-44 183.7 515 31.8
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 5.8e-44 183.0 276 39.1
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 7.6e-44 182.6 725 25.9
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 3.8e-43 180.3 516 30.4
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 3.2e-42 177.2 302 41.1
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 7.8e-41 172.6 756 25.0
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 8.7e-40 169.1 214 46.3
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 8.7e-40 169.1 471 31.0
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 8.7e-40 169.1 494 30.0
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 5.6e-39 166.4 238 41.6
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 1.6e-38 164.9 477 31.9
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 3.6e-38 163.7 596 28.9
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 8.1e-38 162.5 696 27.3
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 1.1e-37 162.2 221 44.3
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 1.2e-36 158.7 691 26.0
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 1.5e-36 158.3 325 36.0
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 5.8e-36 156.4 668 26.8
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 7.6e-36 156.0 707 26.2
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 1.3e-35 155.2 307 37.1
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 1.7e-35 154.8 723 26.8
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 2.9e-35 154.1 691 24.9
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 1.1e-34 152.1 570 30.7
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 4.2e-34 150.2 318 33.6
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 7.1e-34 149.4 681 26.9
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 2.7e-33 147.5 699 26.2
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 6.0e-33 146.4 681 26.7
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 7.9e-33 146.0 210 41.4
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 5.1e-32 143.3 708 26.7
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 6.7e-32 142.9 704 25.6
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 1.9e-31 141.4 110 60.0
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 2.5e-31 141.0 704 25.6
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 7.4e-31 139.4 604 25.2
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 9.6e-31 139.0 240 35.4
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 1.6e-30 138.3 304 34.9
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 4.8e-30 136.7 491 27.1
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 1.1e-29 135.6 715 25.9
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 1.5e-28 131.7 460 29.3
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 4.5e-28 130.2 428 29.9
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.4e-26 125.2 154 40.9
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 9.3e-26 122.5 251 33.1
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 1.6e-25 121.7 273 31.5
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 4.6e-25 120.2 606 23.4
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 5.6e-23 113.2 525 25.9
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 8.1e-22 109.4 107 49.5
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 2.6e-20 104.4 294 32.0
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 2.6e-20 104.4 320 32.5
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.0e-19 102.4 339 27.4
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 2.3e-16 91.3 164 38.4
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 5.1e-16 90.1 106 43.4
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 3.4e-12 77.4 319 26.3
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 1.3e-11 75.5 94 42.6
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 2.1e-09 68.2 179 31.3
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.0e-08 65.9 366 25.4
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.0e-08 65.9 366 25.4
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 4.3e-07 60.5 524 24.0
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.6e-06 58.5 340 24.4
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 2.2e-06 58.2 340 24.4


User provided reference genes

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