Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 5.9e-129 464.2 226 100.0
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 3.6e-78 295.4 153 96.1
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.7e-75 286.6 200 74.0
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.1e-69 267.3 153 87.6
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 2.3e-56 223.0 177 67.2
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 2.0e-36 156.8 165 54.5
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 8.0e-25 118.2 184 42.4
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 3.3e-23 112.8 187 43.9
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 7.5e-23 111.7 228 34.6
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 1.3e-22 110.9 207 41.1
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.3e-22 110.9 162 43.8
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 3.7e-22 109.4 168 42.9
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 1.1e-21 107.8 227 35.7
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 1.1e-21 107.8 167 41.3
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 1.4e-21 107.5 171 39.8
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 2.4e-21 106.7 170 41.8
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 2.4e-21 106.7 177 40.7
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 3.1e-21 106.3 171 39.8
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 3.1e-21 106.3 186 39.2
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 4.1e-21 105.9 190 37.9
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 7.0e-21 105.1 183 39.9
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 2.0e-20 103.6 161 46.0
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 2.7e-20 103.2 169 40.2
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 2.7e-20 103.2 192 37.5
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 3.5e-20 102.8 171 40.4
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 4.5e-20 102.4 182 40.1
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 5.9e-20 102.1 191 38.2
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 5.9e-20 102.1 186 37.6
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 7.7e-20 101.7 188 39.4
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 7.7e-20 101.7 182 40.1
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 1.0e-19 101.3 172 39.5
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.0e-19 101.3 125 44.0
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 2.2e-19 100.1 172 40.7
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 2.2e-19 100.1 198 38.9
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 3.8e-19 99.4 167 41.3
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 6.5e-19 98.6 167 40.1
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 8.5e-19 98.2 189 39.2
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 1.1e-18 97.8 187 38.0
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 1.1e-18 97.8 170 40.0
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.1e-18 97.8 198 35.9
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 1.5e-18 97.4 167 41.3
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.5e-18 97.4 187 38.0
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 1.9e-18 97.1 184 39.1
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.5e-18 96.7 184 39.7
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 5.5e-18 95.5 181 39.2
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 7.2e-18 95.1 180 41.7
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.2e-17 94.4 183 38.3
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 2.1e-17 93.6 193 36.3
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 4.7e-17 92.4 192 37.5
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 6.1e-17 92.0 216 32.4
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 8.0e-17 91.7 194 37.1
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 8.0e-17 91.7 143 41.3
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 1.4e-16 90.9 173 38.7
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 4.0e-16 89.4 184 38.0
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 1.2e-15 87.8 179 36.9
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 2.0e-15 87.0 199 34.2
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 2.0e-15 87.0 133 37.6
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 3.4e-15 86.3 201 34.8
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 4.4e-15 85.9 173 35.8
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 9.8e-15 84.7 196 36.2
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.8e-14 83.2 155 37.4
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 2.8e-14 83.2 183 36.6
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 4.8e-14 82.4 190 35.3
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 4.8e-14 82.4 196 32.1
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 6.3e-14 82.0 159 38.4
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 6.3e-14 82.0 115 40.0
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 1.1e-13 81.3 113 42.5
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.1e-13 81.3 174 33.3
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 1.4e-13 80.9 176 38.1
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 1.4e-13 80.9 176 38.1
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 1.4e-13 80.9 234 30.3
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 2.4e-13 80.1 202 31.7
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 4.1e-13 79.3 127 40.9
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 4.1e-13 79.3 147 38.1
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 7.0e-13 78.6 184 34.2
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 1.2e-12 77.8 177 35.0
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 1.6e-12 77.4 172 36.6
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 1.6e-12 77.4 176 38.1
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 1.6e-12 77.4 176 38.1
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 1.6e-12 77.4 177 35.0
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 2.7e-12 76.6 168 33.9
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.7e-12 76.6 180 35.0
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 2.7e-12 76.6 116 44.0
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 4.5e-12 75.9 172 36.0
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 1.3e-11 74.3 178 34.3
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 1.3e-11 74.3 178 34.3
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 1.3e-11 74.3 172 32.6
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 1.7e-11 73.9 177 34.5
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 1.7e-11 73.9 177 34.5
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 2.2e-11 73.6 176 36.9
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 2.2e-11 73.6 175 33.7
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 3.8e-11 72.8 116 40.5
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 5.0e-11 72.4 108 40.7
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 8.5e-11 71.6 231 30.7
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 1.5e-10 70.9 102 40.2
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 1.9e-10 70.5 171 35.1
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 2.5e-10 70.1 93 46.2
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 2.5e-10 70.1 162 32.1
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.2e-10 69.7 136 34.6
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 5.5e-10 68.9 168 37.5
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 1.2e-09 67.8 127 41.7
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 1.2e-09 67.8 127 41.7
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 2.1e-09 67.0 127 39.4
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 3.6e-09 66.2 174 35.6
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 4.7e-09 65.9 169 37.3
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 6.1e-09 65.5 83 47.0
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 8.0e-09 65.1 104 40.4
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 1.0e-08 64.7 157 35.7
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 8.8e-08 61.6 127 38.6
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 1.2e-07 61.2 79 46.8
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 2.6e-07 60.1 211 28.0
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 3.4e-07 59.7 109 34.9
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 4.4e-07 59.3 174 30.5
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 4.4e-07 59.3 64 46.9
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 5.7e-07 58.9 247 25.1
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 1.3e-06 57.8 64 46.9
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 2.2e-06 57.0 155 29.7
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 3.7e-06 56.2 139 35.3
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 8.3e-06 55.1 159 30.8


User provided reference genes

Program Settings