Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G033760 Cucumis sativus L. HOM05D007515 ORTHO05D009374 6.6e-64 247.3 131 100.0
MELO3C008145.2 Cucumis melo HOM05D007515 ORTHO05D009374 3.5e-57 224.9 131 93.1
Sed0014058 Sechium edule HOM05D007515 ORTHO05D009374 2.5e-31 139.0 135 64.4
ClCG11G007840 Citrullus lanatus HOM05D007515 ORTHO05D009374 5.6e-31 137.9 95 82.1
RcHm_v2.0_Chr4g0422841 Rosa chinensis HOM05D007515 ORTHO05D009374 4.2e-18 95.1 135 47.4
Ciclev10013056m.g Citrus clementina HOM05D007515 ORTHO05D009374 1.2e-17 93.6 137 49.6
Gohir.D11G170400 Gossypium hirsutum HOM05D007515 ORTHO05D009374 2.1e-17 92.8 132 47.0
Gorai.007G182300 Gossypium raimondii HOM05D007515 ORTHO05D009374 2.1e-17 92.8 132 47.0
Atru.chr1.1654 Acer truncatum HOM05D007515 ORTHO05D009374 3.5e-17 92.0 135 47.4
Rhsim08G0082900 Rhododendron simsii HOM05D007515 ORTHO05D009374 4.6e-17 91.7 143 45.5
Gohir.A11G164100 Gossypium hirsutum HOM05D007515 ORTHO05D009374 6.0e-17 91.3 135 45.2
Duzib138G0915 Durio zibethinus HOM05D007515 ORTHO05D009374 7.9e-17 90.9 135 45.2
FvH4_4g18360 Fragaria vesca HOM05D007515 ORTHO05D009374 1.0e-16 90.5 135 48.9
Actinidia15892 Actinidia chinensis HOM05D007515 ORTHO05D009374 2.3e-16 89.4 135 44.4
Rhsim09G0050100 Rhododendron simsii HOM05D007515 ORTHO05D009374 3.0e-16 89.0 143 44.8
Eucgr.J01508 Eucalyptus grandis HOM05D007515 ORTHO05D009374 3.9e-16 88.6 129 49.6
Thecc.04G131400 Theobroma cacao HOM05D007515 ORTHO05D009374 3.9e-16 88.6 122 47.5
MD09G1254600 Malus domestica HOM05D007515 ORTHO05D009374 5.1e-16 88.2 140 47.1
PGR042G1312 Punica granatum HOM05D007515 ORTHO05D009374 1.1e-15 87.0 126 46.8
GSVIVG01031005001 Vitis vinifera HOM05D007515 ORTHO05D009374 1.1e-15 87.0 138 49.3
Aqoxy3G00240 Aquilegia oxysepala HOM05D007515 ORTHO05D009374 1.9e-15 86.3 140 42.9
Hund16163 Selenicereus undatus HOM05D007515 ORTHO05D009374 1.9e-15 86.3 132 44.7
Potri.017G116500 Populus trichocarpa HOM05D007515 ORTHO05D009374 2.5e-15 85.9 137 46.7
Nn4g23909 Nelumbo nucifera HOM05D007515 ORTHO05D009374 9.6e-15 84.0 137 44.5
CiPaw.03G063100 Carya illinoinensis HOM05D007515 ORTHO05D009374 1.6e-14 83.2 125 45.6
Manes.02G070000 Manihot esculenta HOM05D007515 ORTHO05D009374 3.7e-14 82.0 131 44.3
FAN12G0861 Fragaria x ananassa HOM05D007515 ORTHO05D009374 6.3e-14 81.3 148 44.6
FAN12G1919 Fragaria x ananassa HOM05D007515 ORTHO05D009374 6.3e-14 81.3 148 44.6
Lsat_1_v5_gn_2_79341 Lactuca sativa HOM05D007515 ORTHO05D009374 3.1e-13 79.0 133 45.1
QL02p050960 Quercus lobata HOM05D007515 ORTHO05D009374 5.3e-13 78.2 134 44.0
QL12p016476 Quercus lobata HOM05D007515 ORTHO05D009374 5.3e-13 78.2 134 44.0
Phvul.004G062000 Phaseolus vulgaris HOM05D007515 ORTHO05D009374 1.5e-12 76.6 137 41.6
TAR622G1055 Trochodendron aralioides HOM05D007515 ORTHO05D009374 3.4e-12 75.5 135 44.4
VMungo0464G1380 Vigna mungo HOM05D007515 ORTHO05D009374 7.6e-12 74.3 137 41.6
Carub.0006s1435 Capsella rubella HOM05D007515 ORTHO05D009374 1.0e-11 73.9 129 41.9
MBI16_g28238_MAGBIO Magnolia biondii HOM05D007515 ORTHO05D009374 1.3e-11 73.6 122 41.0
Glyma.13G044900 Glycine max HOM05D007515 ORTHO05D009374 1.7e-11 73.2 137 40.9
CARHR197140 Cardamine hirsuta HOM05D007515 ORTHO05D009374 2.2e-11 72.8 129 43.4
Lj2g0024883 Lotus japonicus HOM05D007515 ORTHO05D009374 2.9e-11 72.4 133 40.6
MSTRG.23581 Avicennia marina HOM05D007515 ORTHO05D009374 3.8e-11 72.0 139 43.2
AT5G16160 Arabidopsis thaliana HOM05D007515 ORTHO05D009374 1.1e-10 70.5 130 42.3
Medtr6g018800 Medicago truncatula HOM05D007515 ORTHO05D009374 1.4e-10 70.1 137 40.1
HanXRQChr14g0440481 Helianthus annuus HOM05D007515 ORTHO05D009374 1.9e-10 69.7 130 43.1
Aa31LG11G13450 Aethionema arabicum HOM05D007515 ORTHO05D009374 2.5e-10 69.3 129 44.2
Hma1.2p1_0075F.1_g039300 Hydrangea macrophylla HOM05D007515 ORTHO05D009374 4.2e-10 68.6 130 42.3
Thhalv10014997m.g Eutrema salsugineum HOM05D007515 ORTHO05D009374 5.5e-10 68.2 130 40.8
Haze_14170 Corylus avellana HOM05D007515 ORTHO05D009374 7.2e-10 67.8 127 42.5
DCAR_025907 Daucus carota HOM05D007515 ORTHO05D009374 7.2e-10 67.8 129 43.4
Glyma.19G050400 Glycine max HOM05D007515 ORTHO05D009374 7.2e-10 67.8 137 39.4
Nitab4.5_0007990g0020 Nicotiana tabacum HOM05D007515 ORTHO05D009374 7.2e-10 67.8 143 39.2
Sopen02g030860 Solanum pennellii HOM05D007515 ORTHO05D009374 7.2e-10 67.8 135 39.3
Solyc02g086170.3 Solanum lycopersicum HOM05D007515 ORTHO05D009374 1.2e-09 67.0 135 43.0
Nitab4.5_0000912g0070 Nicotiana tabacum HOM05D007515 ORTHO05D009374 1.6e-09 66.6 143 40.6
Sp6g27980 Schrenkiella parvula HOM05D007515 ORTHO05D009374 2.1e-09 66.2 129 42.6
Peaxi162Scf00394g00816 Petunia axillaris HOM05D007515 ORTHO05D009374 2.7e-09 65.9 131 42.7
PGSC0003DMG400026389 Solanum tuberosum HOM05D007515 ORTHO05D009374 2.7e-09 65.9 140 40.7
COL.COLO4_09352 Corchorus olitorius HOM05D007515 ORTHO05D009374 4.6e-09 65.1 98 43.9
THA.LOC104827160 Tarenaya hassleriana HOM05D007515 ORTHO05D009374 4.6e-09 65.1 139 41.0
TPR.G32460 Trifolium pratense HOM05D007515 ORTHO05D009374 6.1e-09 64.7 138 40.6
ECA238G4180 Erigeron canadensis HOM05D007515 ORTHO05D009374 7.9e-09 64.3 115 36.5
Lalb_Chr02g0158161 Lupinus albus HOM05D007515 ORTHO05D009374 7.9e-09 64.3 122 38.5
Zm00001eb360590 Zea mays HOM05D007515 ORTHO05D009374 7.9e-09 64.3 131 38.9
Os01g0689600 Oryza sativa ssp. japonica HOM05D007515 ORTHO05D009374 1.3e-08 63.5 118 37.3
unitig_736.g22559 Utricularia gibba HOM05D007515 ORTHO05D009374 1.8e-08 63.2 129 37.2
BcaC03g18471 Brassica carinata HOM05D007515 ORTHO05D009374 2.3e-08 62.8 130 40.8
BolC2t06740H Brassica oleracea HOM05D007515 ORTHO05D009374 2.3e-08 62.8 130 40.8
CDE12G0697 Ceratophyllum demersum HOM05D007515 ORTHO05D009374 2.3e-08 62.8 130 38.5
Cpa.g.sc170.54 Carica papaya HOM05D007515 ORTHO05D009374 3.0e-08 62.4 186 37.1
Cc07_g08700 Coffea canephora HOM05D007515 ORTHO05D009374 3.9e-08 62.0 138 39.1
CDE06G2600 Ceratophyllum demersum HOM05D007515 ORTHO05D009374 1.1e-07 60.5 134 38.1
Sabra17G0096400 Salix brachista HOM05D007515 ORTHO05D009374 4.3e-07 58.5 97 43.3
HPP92_011524 Vanilla planifolia HOM05D007515 ORTHO05D009374 4.3e-07 58.5 130 34.6
Oeu039735.1 Olea europaea HOM05D007515 ORTHO05D009374 5.7e-07 58.2 101 42.6
A02p03410 Brassica napus HOM05D007515 ORTHO05D009374 9.7e-07 57.4 129 36.4
BraA02t05312Z Brassica rapa HOM05D007515 ORTHO05D009374 1.6e-06 56.6 129 36.4
BcaNung02224 Brassica carinata HOM05D007515 ORTHO05D009374 2.2e-06 56.2 136 39.0
Cfa007908 Carpinus fangiana HOM05D007515 ORTHO05D009374 4.8e-06 55.1 102 39.2
SalBow3G4303 Salvia bowleyana HOM05D007515 ORTHO05D009374 6.3e-06 54.7 117 39.3


User provided reference genes

Program Settings