Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 1.4e-99 366.3 185 100.0
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 3.7e-97 358.2 185 97.8
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 1.3e-89 333.2 180 92.8
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 4.2e-80 301.6 182 84.1
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 1.1e-77 293.5 172 84.3
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 1.8e-75 286.2 174 82.8
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.7e-73 279.6 175 82.9
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 2.2e-73 279.3 176 80.7
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 3.8e-73 278.5 175 79.4
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 6.4e-73 277.7 174 82.8
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 1.4e-72 276.6 178 78.1
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 1.9e-72 276.2 183 76.0
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 5.4e-72 274.6 182 73.6
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 7.1e-72 274.2 176 76.1
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 7.1e-72 274.2 175 78.9
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 9.3e-72 273.9 181 75.7
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 9.3e-72 273.9 173 78.6
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.6e-71 273.1 175 77.1
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 2.7e-71 272.3 176 76.7
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 3.5e-71 271.9 173 76.3
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 4.6e-71 271.6 179 73.2
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 7.9e-71 270.8 175 77.1
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 1.0e-70 270.4 174 77.6
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 1.3e-70 270.0 174 75.9
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 1.3e-70 270.0 177 75.7
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 1.3e-70 270.0 171 79.5
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 2.3e-70 269.2 176 76.7
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 8.7e-70 267.3 181 72.4
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 1.1e-69 266.9 179 77.7
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 1.5e-69 266.5 186 73.7
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 2.5e-69 265.8 176 76.7
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 2.5e-69 265.8 175 76.0
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 7.4e-69 264.2 176 75.0
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 4.8e-68 261.5 174 76.4
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 1.4e-67 260.0 175 78.9
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 1.8e-67 259.6 181 74.6
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 6.9e-67 257.7 185 73.5
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 9.0e-67 257.3 193 69.4
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 2.6e-66 255.8 174 74.1
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 4.5e-66 255.0 178 71.9
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 5.8e-66 254.6 174 73.6
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 5.8e-66 254.6 177 70.6
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 5.8e-66 254.6 176 73.3
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 7.6e-66 254.2 175 76.0
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 1.7e-65 253.1 174 72.4
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.7e-65 253.1 176 72.7
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.7e-65 253.1 176 72.7
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 2.2e-65 252.7 182 70.3
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 2.2e-65 252.7 178 71.3
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 6.4e-65 251.1 176 71.0
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 8.4e-65 250.8 177 68.9
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 8.4e-65 250.8 179 68.2
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 8.4e-65 250.8 179 68.2
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 8.4e-65 250.8 177 68.9
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 1.4e-64 250.0 179 68.2
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 2.4e-64 249.2 174 73.0
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 3.2e-64 248.8 185 67.0
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 3.2e-64 248.8 169 75.1
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 3.2e-64 248.8 158 79.1
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 4.2e-64 248.4 175 70.9
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 4.2e-64 248.4 175 70.9
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 9.3e-64 247.3 175 70.9
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 9.3e-64 247.3 169 75.7
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 1.2e-63 246.9 185 70.8
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 1.2e-63 246.9 175 70.3
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.6e-63 246.5 187 67.4
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 1.6e-63 246.5 178 70.2
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.7e-63 245.7 182 72.5
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 3.5e-63 245.4 167 72.5
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 3.5e-63 245.4 175 69.7
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 3.5e-63 245.4 175 69.7
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 3.5e-63 245.4 191 68.6
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 4.6e-63 245.0 175 72.0
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 6.0e-63 244.6 175 72.0
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 7.9e-63 244.2 175 70.9
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 1.0e-62 243.8 163 75.5
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 1.3e-62 243.4 169 71.0
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 1.3e-62 243.4 175 72.0
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 1.3e-62 243.4 191 69.6
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.3e-62 243.4 160 79.4
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 1.8e-62 243.0 203 65.0
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.8e-62 243.0 179 69.8
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 2.3e-62 242.7 175 70.9
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 3.0e-62 242.3 178 69.1
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 3.9e-62 241.9 166 72.3
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 6.7e-62 241.1 174 69.0
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 6.7e-62 241.1 169 72.8
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 1.9e-61 239.6 160 73.8
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 3.3e-61 238.8 160 75.6
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 3.3e-61 238.8 179 65.9
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 4.3e-61 238.4 160 76.2
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 5.6e-61 238.0 172 69.8
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 7.4e-61 237.7 172 70.9
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 9.6e-61 237.3 191 66.5
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 9.6e-61 237.3 174 66.1
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 1.3e-60 236.9 170 71.8
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 1.3e-60 236.9 175 66.9
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.3e-60 236.9 175 68.0
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 2.1e-60 236.1 191 66.0
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 2.8e-60 235.7 171 70.8
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 3.7e-60 235.3 158 75.3
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 3.7e-60 235.3 172 68.6
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 3.7e-60 235.3 250 55.2
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 8.1e-60 234.2 169 71.6
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 3.1e-59 232.3 193 64.8
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.6e-58 229.2 159 71.1
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 3.4e-58 228.8 204 60.8
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 3.4e-58 228.8 174 64.9
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 1.0e-57 227.3 177 64.4
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.0e-57 227.3 198 64.1
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 3.8e-57 225.3 202 60.9
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 8.4e-57 224.2 176 64.8
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 2.5e-56 222.6 176 64.8
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 2.5e-56 222.6 174 67.8
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 5.5e-56 221.5 199 61.3
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 1.2e-55 220.3 171 66.1
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.6e-55 219.9 161 69.6
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.6e-55 219.9 161 69.6
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.1e-55 219.5 161 68.9
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 2.1e-55 219.5 159 64.8
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 2.7e-55 219.2 156 70.5
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 2.7e-55 219.2 175 62.3
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 1.0e-54 217.2 172 66.3
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 1.8e-54 216.5 161 69.6
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 6.7e-54 214.5 175 61.7
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 4.3e-53 211.8 175 65.1
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 1.2e-50 203.8 121 81.8
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 1.2e-50 203.8 159 61.6
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 2.0e-50 203.0 121 78.5
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 3.4e-50 202.2 159 60.4
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 7.6e-50 201.1 120 80.8
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 7.6e-50 201.1 129 79.1
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 1.0e-49 200.7 162 67.3
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 2.5e-48 196.1 122 82.0
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 3.2e-48 195.7 120 80.8
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 5.5e-48 194.9 126 76.2
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 9.3e-48 194.1 129 76.0
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 1.0e-46 190.7 155 66.5
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 3.9e-46 188.7 121 76.9
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 6.7e-46 188.0 132 72.7
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 1.5e-42 176.8 130 69.2
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 3.8e-41 172.2 119 70.6
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.2e-39 167.2 117 68.4
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 2.1e-39 166.4 149 53.0
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 7.9e-39 164.5 140 60.0
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 2.3e-38 162.9 130 61.5
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 6.7e-38 161.4 158 52.5
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 3.3e-37 159.1 151 51.7
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 5.7e-37 158.3 152 52.0
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 5.7e-37 158.3 144 53.5
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 4.5e-34 148.7 116 64.7
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 5.9e-34 148.3 89 82.0
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 2.2e-33 146.4 164 48.8
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 2.9e-33 146.0 145 50.3
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 3.7e-28 129.0 108 60.2
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.7e-25 120.2 109 60.6
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 2.6e-21 106.3 147 43.5
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 1.8e-19 100.1 88 61.4
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 4.8e-12 75.5 78 44.9
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 9.1e-11 71.2 46 69.6
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 7.7e-10 68.2 42 78.6
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 1.1e-08 64.3 46 71.7
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 1.1e-08 64.3 46 71.7
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 1.5e-08 63.9 44 72.7
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 5.5e-08 62.0 47 68.1


User provided reference genes

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