Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.5e-203 712.6 364 100.0
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.0e-147 526.2 477 63.7
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 5.8e-126 454.9 368 69.8
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.7e-48 196.4 364 38.7
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 8.3e-48 195.3 361 37.4
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 1.4e-47 194.5 361 38.5
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 7.7e-46 188.7 361 38.2
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 2.2e-45 187.2 369 39.6
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 1.1e-44 184.9 367 39.5
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 4.2e-44 183.0 365 39.5
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 7.2e-44 182.2 366 40.2
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 2.1e-43 180.6 370 37.0
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.7e-43 180.3 363 37.7
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 6.1e-43 179.1 369 38.2
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 1.8e-42 177.6 375 37.1
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 1.2e-41 174.9 363 36.9
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 1.5e-41 174.5 368 37.2
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 5.7e-41 172.6 375 37.1
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 5.7e-41 172.6 399 36.8
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 7.5e-41 172.2 363 36.6
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 7.5e-41 172.2 395 35.2
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 7.5e-41 172.2 381 36.5
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 1.3e-40 171.4 381 36.7
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 1.7e-40 171.0 367 35.4
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 8.3e-40 168.7 371 37.5
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 1.8e-39 167.5 362 36.5
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 3.1e-39 166.8 365 35.1
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 5.4e-39 166.0 361 35.5
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 9.1e-39 165.2 368 36.4
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 9.1e-39 165.2 386 36.3
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 9.1e-39 165.2 386 36.3
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 9.1e-39 165.2 361 35.7
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 1.2e-38 164.9 393 32.8
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 1.2e-38 164.9 394 34.0
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 1.6e-38 164.5 362 34.8
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.0e-38 164.1 388 35.6
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.0e-38 164.1 385 36.6
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 3.5e-38 163.3 369 35.2
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.7e-37 161.0 362 35.4
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 5.0e-37 159.5 370 35.4
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 1.4e-34 151.4 424 34.2
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.4e-34 151.4 376 34.3
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.4e-34 151.4 371 35.3
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.8e-34 151.0 379 35.9
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.3e-34 150.6 370 34.1
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.0e-34 150.2 380 35.5
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 4.0e-34 149.8 376 34.0
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 4.0e-34 149.8 259 40.2
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 4.0e-34 149.8 399 34.1
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 5.2e-34 149.4 366 36.6
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 6.8e-34 149.1 371 34.2
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.0e-33 147.5 259 40.2
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 5.7e-33 146.0 377 33.7
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 7.5e-33 145.6 418 32.3
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 2.9e-32 143.7 135 54.8
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 6.3e-32 142.5 380 33.7
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 6.3e-32 142.5 384 35.9
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.8e-31 141.0 371 34.0
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.8e-31 141.0 385 34.5
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 1.6e-30 137.9 363 31.7
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 4.6e-30 136.3 373 31.6
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.0e-29 135.2 160 48.8
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.9e-29 133.7 369 33.1
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.9e-29 133.7 386 33.2
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.9e-29 133.7 369 33.9
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 5.0e-29 132.9 118 55.9
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 6.6e-29 132.5 189 43.9
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.1e-28 131.7 150 46.7
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.1e-27 127.5 140 47.1
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 2.1e-27 127.5 387 32.8
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.8e-27 127.1 140 47.1
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 3.6e-27 126.7 122 50.0
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 4.7e-27 126.3 323 35.6
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 1.4e-26 124.8 377 29.7
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.3e-26 124.0 368 30.7
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.1e-26 123.6 392 31.1
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 6.8e-26 122.5 157 44.6
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 6.8e-26 122.5 368 32.1
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 8.9e-26 122.1 378 31.0
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 8.9e-26 122.1 128 52.3
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.2e-25 121.7 212 38.2
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.0e-25 120.9 236 38.1
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.6e-25 120.6 380 30.3
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 2.6e-25 120.6 267 35.2
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 5.8e-25 119.4 368 33.4
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 9.8e-25 118.6 190 38.9
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 9.8e-25 118.6 369 32.8
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 1.3e-24 118.2 202 40.6
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 3.7e-24 116.7 401 30.7
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 3.7e-24 116.7 371 30.2
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 4.9e-24 116.3 160 43.8
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 4.9e-24 116.3 160 43.8
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 4.9e-24 116.3 180 39.4
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 8.3e-24 115.5 102 51.0
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 1.1e-23 115.2 199 39.2
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.1e-23 115.2 208 39.9
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 1.4e-23 114.8 166 41.0
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 1.9e-23 114.4 160 43.1
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 1.9e-23 114.4 160 43.1
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.9e-23 114.4 202 37.1
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.9e-23 114.4 377 28.9
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 3.2e-23 113.6 106 56.6
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 5.4e-23 112.8 151 43.0
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 5.4e-23 112.8 110 48.2
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 9.2e-23 112.1 222 36.5
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.2e-22 111.7 207 39.6
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.7e-22 110.5 227 35.7
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 3.5e-22 110.2 204 36.3
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 4.6e-22 109.8 119 52.9
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 6.0e-22 109.4 261 33.0
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 6.0e-22 109.4 98 58.2
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 6.0e-22 109.4 98 58.2
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 7.8e-22 109.0 150 40.0
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 1.0e-21 108.6 168 44.0
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 1.0e-21 108.6 276 35.1
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.3e-21 108.2 148 40.5
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 1.7e-21 107.8 276 35.1
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 2.3e-21 107.5 275 31.6
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 2.3e-21 107.5 98 52.0
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 3.0e-21 107.1 295 32.9
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 3.9e-21 106.7 178 40.4
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 5.0e-21 106.3 295 32.5
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 6.6e-21 105.9 237 37.1
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 6.6e-21 105.9 169 42.0
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 1.1e-20 105.1 224 35.3
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.1e-20 105.1 365 27.7
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 1.5e-20 104.8 365 29.9
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.5e-20 104.8 384 29.7
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.9e-20 104.4 229 35.8
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.5e-20 104.0 258 33.7
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 2.5e-20 104.0 174 39.7
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 3.3e-20 103.6 369 28.5
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 1.2e-19 101.7 106 50.9
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.2e-19 101.7 319 31.3
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.2e-19 101.7 319 31.3
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 1.2e-19 101.7 156 42.9
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 1.6e-19 101.3 159 44.7
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 2.8e-19 100.5 252 33.3
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 3.6e-19 100.1 156 42.3
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 4.7e-19 99.8 256 32.4
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 4.7e-19 99.8 160 41.2
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 2.3e-18 97.4 111 50.5
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 2.3e-18 97.4 356 29.2
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 4.0e-18 96.7 251 31.9
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 4.0e-18 96.7 251 31.9
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 4.0e-18 96.7 251 31.9
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 4.0e-18 96.7 175 36.6
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 6.8e-18 95.9 214 39.7
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 8.9e-18 95.5 186 40.9
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 1.2e-17 95.1 177 38.4
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 2.0e-17 94.4 197 36.5
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 4.4e-17 93.2 301 31.9
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 4.4e-17 93.2 292 31.2
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 4.4e-17 93.2 292 31.2
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 4.4e-17 93.2 292 31.2
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 4.4e-17 93.2 205 36.1
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 4.4e-17 93.2 73 60.3
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.2e-16 90.9 73 60.3
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 2.9e-16 90.5 153 42.5
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 7.8e-14 82.4 173 34.1
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 1.3e-13 81.6 127 37.0
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 9.5e-12 75.5 131 35.9
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 3.6e-11 73.6 202 29.7
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 1.1e-10 72.0 331 26.3
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.4e-09 66.6 84 36.9
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 7.6e-09 65.9 158 34.2
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.9e-07 61.2 43 69.8
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 7.1e-07 59.3 199 29.6
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 3.5e-06 57.0 98 33.7


User provided reference genes

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