Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1932.5 946 100.0
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1738.4 953 90.9
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 0.0e+00 1644.0 846 95.6
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1590.9 928 84.3
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1261.5 955 67.9
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1260.4 940 68.4
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1255.0 956 67.3
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1245.7 939 67.7
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1239.9 931 68.9
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1235.3 934 67.8
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1233.0 947 65.7
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1226.8 942 67.4
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1224.9 944 65.3
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1223.4 986 64.9
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1222.6 946 67.0
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1221.5 938 67.0
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1216.4 937 66.4
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1215.7 929 67.8
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1214.1 949 64.8
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1213.4 954 66.9
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1202.2 954 66.1
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1199.9 934 65.8
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1197.6 937 65.8
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1197.2 944 65.1
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1196.8 925 65.7
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1195.3 940 65.1
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1194.1 934 65.7
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1191.4 952 64.2
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1190.3 939 66.0
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1183.7 961 63.3
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1182.2 937 64.7
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1179.9 965 63.8
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1179.9 967 63.5
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1179.1 1001 62.0
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1179.1 940 64.8
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1178.7 970 62.2
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1177.9 928 65.8
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1176.0 936 66.1
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1171.8 937 64.9
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1169.8 935 64.1
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1168.7 926 64.0
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1163.7 938 63.6
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1163.3 927 64.1
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1161.7 908 64.4
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1161.7 939 63.4
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1159.4 1029 59.6
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1156.4 921 64.2
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1155.6 951 62.6
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1153.7 932 63.2
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1152.5 939 64.3
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1148.3 944 63.1
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1144.4 975 61.0
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1143.3 940 62.9
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1142.1 947 62.2
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1137.5 1008 58.9
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 0.0e+00 1135.9 1055 59.1
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1135.9 940 63.0
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1134.8 940 62.4
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1131.3 1008 58.1
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1130.9 956 61.4
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1130.5 1008 58.1
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1129.0 950 61.2
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 0.0e+00 1128.6 937 63.0
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1128.2 938 61.9
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1127.5 949 60.8
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1127.1 922 63.6
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1125.5 942 61.9
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1125.2 940 62.0
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1123.6 945 61.7
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1122.1 938 61.6
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1122.1 938 61.6
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1120.1 936 61.2
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1119.4 924 64.6
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1104.4 1019 59.5
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1104.0 975 59.4
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1103.6 984 59.2
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1102.8 950 60.0
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1100.1 986 58.7
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1099.0 951 60.0
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 0.0e+00 1094.0 964 59.8
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1093.2 941 61.8
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1092.0 937 60.3
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1092.0 944 59.9
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1088.9 975 59.4
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1087.8 917 60.2
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1085.1 939 59.6
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1085.1 939 59.6
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1085.1 949 58.7
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1081.6 1060 56.4
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 3.2e-311 1071.6 954 58.5
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 8.6e-307 1057.0 828 65.6
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 2.5e-306 1055.4 932 58.7
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 1.2e-305 1053.1 1063 53.6
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 1.2e-305 1053.1 944 58.5
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 8.1e-305 1050.4 942 57.6
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 1.4e-304 1049.7 923 58.5
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 4.0e-304 1048.1 850 64.6
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 4.2e-301 1038.1 908 60.2
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 7.8e-300 1033.9 905 60.1
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 1.0e-299 1033.5 964 57.5
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 3.0e-299 1031.9 915 59.7
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 2.5e-298 1028.9 938 57.9
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 5.6e-298 1027.7 954 57.0
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 3.1e-296 1021.9 881 60.6
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 1.3e-294 1016.5 927 57.7
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 4.9e-294 1014.6 1046 53.7
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 8.4e-294 1013.8 931 57.3
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 2.1e-292 1009.2 974 55.9
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.7e-291 1006.1 963 56.2
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 1.3e-289 1000.0 1191 49.3
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 3.4e-279 965.3 862 59.0
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 5.7e-266 921.4 777 61.9
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 8.8e-259 897.5 947 52.5
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 2.5e-253 879.4 914 52.2
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 3.0e-251 872.5 690 66.2
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 5.5e-245 851.7 766 57.7
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 3.6e-244 849.0 943 49.0
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 1.0e-243 847.4 866 51.0
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 3.5e-239 832.4 848 51.4
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 3.0e-235 819.3 1109 43.5
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 8.3e-209 731.5 728 54.3
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.4e-203 714.1 667 58.2
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 4.1e-200 702.6 625 59.4
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 1.7e-198 697.2 635 58.3
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 9.6e-189 664.8 429 76.9
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 3.0e-174 616.7 766 47.7
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.3e-163 579.3 381 74.3
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.5e-162 577.8 427 68.9
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 4.8e-156 556.2 389 71.2
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 5.0e-145 519.6 473 60.0
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 3.6e-127 460.3 574 47.7
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.0e-125 454.5 327 69.1
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 2.4e-123 447.6 296 73.0
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.0e-121 442.2 550 47.5
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 2.9e-121 440.7 294 71.1
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.2e-120 437.2 718 39.6
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 5.0e-113 413.3 349 61.0
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 5.6e-104 383.3 353 55.0
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.4e-99 368.6 325 57.5
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 1.6e-95 355.1 213 79.3
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 1.0e-57 229.6 157 71.3
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.8e-49 202.2 139 66.2
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 2.3e-49 201.8 133 72.2
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 7.4e-48 196.8 210 48.1
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 5.5e-43 180.6 132 68.9
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.3e-33 149.4 100 70.0
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 2.5e-32 145.2 160 46.2
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 1.8e-30 139.0 114 57.0
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.7e-28 132.5 76 82.9
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.0e-25 123.2 86 65.1
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.8e-25 122.5 287 35.2
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 4.7e-18 97.8 160 38.1
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 8.0e-18 97.1 66 69.7
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 1.1e-16 93.2 275 32.0
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 2.0e-16 92.4 57 73.7
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 2.4e-14 85.5 65 61.5
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 3.5e-13 81.6 82 53.7
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 9.4e-11 73.6 68 51.5
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 4.7e-10 71.2 66 43.9
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 6.1e-10 70.9 146 34.2
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 1.4e-09 69.7 53 60.4
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 1.4e-09 69.7 53 60.4
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 2.3e-09 68.9 53 60.4
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 2.0e-08 65.9 78 44.9
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.0e-08 65.9 62 53.2
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 2.2e-07 62.4 51 62.7
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.4e-06 59.7 52 57.7


User provided reference genes

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