Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1713.7 861 100.0
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1681.8 861 98.0
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1640.6 861 95.4
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1509.2 876 87.8
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1367.4 771 89.5
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1290.0 862 75.1
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1282.3 863 75.9
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1279.2 866 74.9
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1278.1 866 75.1
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1275.4 859 75.9
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1267.7 870 73.7
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1263.8 841 75.7
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1261.9 866 74.7
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1261.1 866 74.8
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1261.1 861 74.4
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1259.6 866 74.4
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1255.0 853 74.3
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1246.9 894 72.4
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1245.7 859 73.6
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1243.4 866 73.1
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1234.9 866 73.7
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1234.9 865 73.4
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1233.0 862 72.4
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1231.9 864 72.3
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1230.7 865 74.6
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1228.8 865 74.3
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1228.8 865 74.3
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1220.7 860 71.4
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1219.9 870 72.3
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1219.5 863 72.0
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1219.1 825 75.6
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1219.1 867 72.9
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1210.3 867 71.0
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1204.5 866 72.1
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1201.0 853 72.2
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1200.7 863 71.8
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1195.6 841 72.7
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1192.9 860 71.7
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1192.2 863 71.4
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1187.2 866 69.5
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 0.0e+00 1182.5 864 70.6
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1182.2 865 69.4
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 0.0e+00 1179.9 859 70.5
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1179.1 861 71.3
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1178.7 862 69.0
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1178.3 863 69.8
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 0.0e+00 1177.5 863 70.3
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1177.2 874 69.6
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 0.0e+00 1177.2 869 70.1
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1175.2 838 72.4
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1173.3 859 70.3
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1172.9 861 69.1
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1171.8 864 68.6
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1171.0 868 70.0
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1171.0 865 68.8
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1170.6 861 70.7
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1168.7 872 68.3
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1168.7 776 75.9
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 0.0e+00 1168.3 778 75.6
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1167.9 868 68.4
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 0.0e+00 1166.0 968 64.0
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 0.0e+00 1164.1 860 70.1
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 0.0e+00 1164.1 866 68.9
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1163.7 866 68.0
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1163.3 868 69.8
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1159.8 887 68.3
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 0.0e+00 1158.7 763 77.6
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1154.0 864 68.8
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1151.3 857 68.8
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1146.0 857 68.6
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 0.0e+00 1142.5 865 68.6
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1141.7 881 67.9
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 0.0e+00 1140.2 842 69.6
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1132.1 863 67.6
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 0.0e+00 1131.7 942 64.5
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1129.8 868 66.7
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1129.8 868 66.7
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 0.0e+00 1129.4 921 64.8
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1127.9 944 64.3
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1124.0 862 67.2
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1120.9 859 67.8
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1115.5 857 67.8
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1114.4 881 67.5
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1112.4 862 65.7
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 0.0e+00 1112.1 1018 60.6
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1110.5 736 75.4
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1104.4 956 62.9
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1103.6 866 66.3
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1102.0 861 65.4
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 0.0e+00 1097.4 839 67.9
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 0.0e+00 1095.5 854 66.7
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1095.5 864 65.7
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1094.3 842 66.9
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 0.0e+00 1090.9 865 65.7
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1090.9 865 65.7
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 0.0e+00 1090.5 864 65.7
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1087.4 864 65.6
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1078.9 864 65.3
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 1.2e-311 1073.2 711 75.8
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 3.4e-310 1068.1 890 63.4
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 3.8e-309 1064.7 877 64.9
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 1.4e-303 1046.2 740 71.8
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 3.5e-299 1031.6 840 64.3
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 3.7e-296 1021.5 758 68.5
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 6.9e-295 1017.3 862 61.7
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 1.0e-290 1003.4 726 69.1
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 7.7e-278 960.7 728 68.0
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 6.1e-275 951.0 606 79.0
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 3.9e-274 948.3 848 59.1
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.5e-273 946.4 799 62.3
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 5.7e-273 944.5 858 60.7
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 5.7e-273 944.5 859 60.4
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 7.7e-262 907.5 743 63.4
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 1.8e-258 896.3 689 67.3
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 3.1e-255 885.6 538 82.0
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 1.2e-230 803.9 864 53.5
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 1.4e-226 790.4 842 52.7
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 8.3e-224 781.2 784 57.5
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 6.6e-213 745.0 547 70.2
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 2.4e-210 736.5 476 76.9
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 3.3e-204 716.1 863 47.4
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.2e-201 707.6 871 46.2
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 4.4e-201 705.7 875 47.5
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 4.6e-182 642.5 462 71.2
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 2.5e-172 610.1 762 47.8
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 2.4e-170 603.6 576 57.6
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 3.0e-165 586.6 388 76.3
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.4e-159 567.8 476 63.0
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 1.9e-159 567.4 494 63.2
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 1.7e-155 554.3 393 70.5
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 4.8e-155 552.7 474 62.7
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 5.3e-154 549.3 461 63.8
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 2.9e-152 543.5 862 41.3
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 1.1e-146 525.0 738 44.7
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 3.8e-128 463.4 301 74.4
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 2.5e-127 460.7 462 55.2
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 7.0e-122 442.6 390 58.2
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 4.6e-121 439.9 308 73.1
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 2.5e-119 434.1 313 70.3
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.2e-118 431.8 370 64.1
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.2e-118 431.8 354 64.1
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 8.1e-102 375.9 321 59.8
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 1.2e-84 318.9 294 57.5
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 2.0e-84 318.2 205 76.1
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 7.6e-76 289.7 252 60.3
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 5.1e-72 276.9 173 75.7
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 4.2e-66 257.3 185 67.0
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 8.2e-62 243.0 158 79.1
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 1.4e-58 232.3 226 57.5
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 5.9e-52 210.3 132 79.5
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 5.9e-44 183.7 492 32.7
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 1.8e-40 172.2 159 61.6
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 1.7e-38 165.6 281 42.0
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 2.0e-31 142.1 128 63.3
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 2.8e-30 138.3 127 59.1
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 6.3e-30 137.1 72 94.4
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 1.6e-28 132.5 152 52.0
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 1.7e-22 112.5 77 76.6
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 4.1e-21 107.8 71 76.1
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 3.8e-19 101.3 110 56.4
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 1.8e-16 92.4 74 67.6
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 2.0e-15 89.0 87 57.5
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 4.4e-15 87.8 92 51.1
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 1.0e-11 76.6 47 78.7
Hma1.2p1_0492F.1_g164730 Hydrangea macrophylla HOM05D011107 ORTHO05D012795 3.8e-11 74.7 75 60.0
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 4.0e-08 64.7 35 80.0
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 4.0e-08 64.7 35 80.0
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 4.0e-08 64.7 35 80.0
Lsat_1_v5_gn_6_80241 Lactuca sativa HOM05D004192 ORTHO05D004917 8.9e-08 63.5 44 72.7


User provided reference genes

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