Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G032220 Cucumis sativus L. HOM05D005419 ORTHO05D007365 1.1e-167 593.2 292 100.0
MELO3C011274.2 Cucumis melo HOM05D005419 ORTHO05D007365 2.7e-158 562.0 292 94.2
Sed0010362 Sechium edule HOM05D005419 ORTHO05D007365 5.1e-157 557.8 292 93.5
Gohir.D05G058700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 1.4e-151 539.7 292 87.7
Gorai.009G059800 Gossypium raimondii HOM05D005419 ORTHO05D007365 1.4e-151 539.7 292 87.7
Duzib150G0083 Durio zibethinus HOM05D005419 ORTHO05D007365 4.2e-151 538.1 292 88.4
QL02p020871 Quercus lobata HOM05D005419 ORTHO05D007365 7.1e-151 537.3 291 88.3
Gorai.010G116600 Gossypium raimondii HOM05D005419 ORTHO05D007365 4.6e-150 534.6 292 87.0
Ciclev10009082m.g Citrus clementina HOM05D005419 ORTHO05D007365 6.0e-150 534.3 292 87.7
Gohir.A06G099500 Gossypium hirsutum HOM05D005419 ORTHO05D007365 1.0e-149 533.5 292 86.6
Cfa013117 Carpinus fangiana HOM05D005419 ORTHO05D007365 3.0e-149 531.9 292 87.0
MD15G1129200 Malus domestica HOM05D005419 ORTHO05D007365 3.0e-149 531.9 292 86.6
Phvul.001G049700 Phaseolus vulgaris HOM05D005419 ORTHO05D007365 3.0e-149 531.9 288 87.2
Potri.018G023700 Populus trichocarpa HOM05D005419 ORTHO05D007365 3.9e-149 531.6 292 87.0
Gohir.D06G101700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 6.6e-149 530.8 292 86.3
Atru.chr7.2482 Acer truncatum HOM05D005419 ORTHO05D007365 1.1e-148 530.0 290 86.6
VMungo0647G0032 Vigna mungo HOM05D005419 ORTHO05D007365 2.5e-148 528.9 288 86.5
PGR119G2552 Punica granatum HOM05D005419 ORTHO05D007365 3.3e-148 528.5 292 87.3
Manes.16G125000 Manihot esculenta HOM05D005419 ORTHO05D007365 4.3e-148 528.1 292 86.3
Thecc.09G020800 Theobroma cacao HOM05D005419 ORTHO05D007365 4.3e-148 528.1 294 86.4
RcHm_v2.0_Chr6g0297381 Rosa chinensis HOM05D005419 ORTHO05D007365 7.4e-148 527.3 292 85.3
TWI34G1484 Tripterygium wilfordii HOM05D005419 ORTHO05D007365 2.1e-147 525.8 292 85.3
Dinv15871 Davidia involucrata HOM05D005419 ORTHO05D007365 2.8e-147 525.4 292 85.6
Eucgr.K02838 Eucalyptus grandis HOM05D005419 ORTHO05D007365 2.8e-147 525.4 292 86.6
CiPaw.07G226000 Carya illinoinensis HOM05D005419 ORTHO05D007365 4.8e-147 524.6 292 85.6
MD08G1152600 Malus domestica HOM05D005419 ORTHO05D007365 4.8e-147 524.6 292 86.0
Psat6g028000 Pisum sativum HOM05D005419 ORTHO05D007365 1.8e-146 522.7 288 86.1
GSVIVG01035939001 Vitis vinifera HOM05D005419 ORTHO05D007365 1.8e-146 522.7 292 85.3
THA.LOC104805589 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 2.4e-146 522.3 292 84.9
Cpa.g.sc187.13 Carica papaya HOM05D005419 ORTHO05D007365 4.0e-146 521.5 290 85.5
Peaxi162Scf00935g00015 Petunia axillaris HOM05D005419 ORTHO05D007365 4.0e-146 521.5 292 85.3
SalBow4G1212 Salvia bowleyana HOM05D005419 ORTHO05D007365 4.0e-146 521.5 292 85.6
Glyma.14G113800 Glycine max HOM05D005419 ORTHO05D007365 6.9e-146 520.8 288 85.4
Potri.006G258200 Populus trichocarpa HOM05D005419 ORTHO05D007365 1.2e-145 520.0 292 86.0
CSS0019044 Camellia sinensis var. sinensis HOM05D005419 ORTHO05D007365 1.5e-145 519.6 292 86.0
FvH4_2g28610 Fragaria vesca HOM05D005419 ORTHO05D007365 1.5e-145 519.6 292 85.3
FAN24G2053 Fragaria x ananassa HOM05D005419 ORTHO05D007365 1.5e-145 519.6 292 85.3
DCAR_003104 Daucus carota HOM05D005419 ORTHO05D007365 2.0e-145 519.2 292 85.6
Actinidia14096 Actinidia chinensis HOM05D005419 ORTHO05D007365 3.4e-145 518.5 280 87.1
Cc08_g00340 Coffea canephora HOM05D005419 ORTHO05D007365 3.4e-145 518.5 292 85.3
Medtr1g012830 Medicago truncatula HOM05D005419 ORTHO05D007365 3.4e-145 518.5 288 84.4
EL10Ac2g04167 Beta vulgaris HOM05D005419 ORTHO05D007365 4.5e-145 518.1 292 84.9
Lj5g0012746 Lotus japonicus HOM05D005419 ORTHO05D007365 5.8e-145 517.7 288 84.0
Nitab4.5_0014723g0010 Nicotiana tabacum HOM05D005419 ORTHO05D007365 5.8e-145 517.7 292 84.2
Hma1.2p1_0974F.1_g243070 Hydrangea macrophylla HOM05D005419 ORTHO05D007365 7.6e-145 517.3 292 84.2
FAN20G2331 Fragaria x ananassa HOM05D005419 ORTHO05D007365 9.9e-145 516.9 292 84.6
arahy.Tifrunner.gnm1.ann1.2DG9CD Arachis hypogaea HOM05D005419 ORTHO05D007365 1.3e-144 516.5 287 84.7
arahy.Tifrunner.gnm1.ann1.X3TF0E Arachis hypogaea HOM05D005419 ORTHO05D007365 1.3e-144 516.5 287 84.7
CANSAT25G3306 Cannabis sativa HOM05D005419 ORTHO05D007365 2.9e-144 515.4 289 84.8
TAR383G1021 Trochodendron aralioides HOM05D005419 ORTHO05D007365 2.9e-144 515.4 290 84.1
Nn2g12192 Nelumbo nucifera HOM05D005419 ORTHO05D007365 4.9e-144 514.6 292 83.6
Haze_21481 Corylus avellana HOM05D005419 ORTHO05D007365 1.4e-143 513.1 321 77.9
BcaB06g28051 Brassica carinata HOM05D005419 ORTHO05D007365 1.9e-143 512.7 292 82.5
A04p19650 Brassica napus HOM05D005419 ORTHO05D007365 2.4e-143 512.3 292 82.2
BraA04t17556Z Brassica rapa HOM05D005419 ORTHO05D007365 2.4e-143 512.3 292 82.2
MSTRG.26021 Avicennia marina HOM05D005419 ORTHO05D007365 3.2e-143 511.9 289 84.4
Ca_13036_v3 Cicer arietinum L. HOM05D005419 ORTHO05D007365 5.5e-143 511.1 288 83.0
AUR62012434 Chenopodium quinoa HOM05D005419 ORTHO05D007365 7.1e-143 510.8 289 84.8
HanXRQChr13g0387991 Helianthus annuus HOM05D005419 ORTHO05D007365 7.1e-143 510.8 290 83.4
Sopen08g010000 Solanum pennellii HOM05D005419 ORTHO05D007365 7.1e-143 510.8 292 83.9
Aa31sc229G10 Aethionema arabicum HOM05D005419 ORTHO05D007365 9.3e-143 510.4 292 82.2
Aqoxy7G03594 Aquilegia oxysepala HOM05D005419 ORTHO05D007365 9.3e-143 510.4 292 82.5
Thhalv10000272m.g Eutrema salsugineum HOM05D005419 ORTHO05D007365 9.3e-143 510.4 292 81.8
Lalb_Chr23g0268401 Lupinus albus HOM05D005419 ORTHO05D007365 9.3e-143 510.4 290 83.4
ECA248G3461 Erigeron canadensis HOM05D005419 ORTHO05D007365 1.6e-142 509.6 290 83.4
Migut.A00016 Erythranthe guttata HOM05D005419 ORTHO05D007365 1.6e-142 509.6 292 84.2
unitig_32.g10881 Utricularia gibba HOM05D005419 ORTHO05D007365 1.6e-142 509.6 290 83.1
THA.LOC104815027 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 2.7e-142 508.8 287 84.7
TPR.G14021 Trifolium pratense HOM05D005419 ORTHO05D007365 2.7e-142 508.8 288 83.0
BolC4t27063H Brassica oleracea HOM05D005419 ORTHO05D007365 3.5e-142 508.4 292 81.5
BcaC02g08359 Brassica carinata HOM05D005419 ORTHO05D007365 4.6e-142 508.1 292 81.5
Sed0006243 Sechium edule HOM05D005419 ORTHO05D007365 6.0e-142 507.7 289 85.1
C04p55260 Brassica napus HOM05D005419 ORTHO05D007365 7.9e-142 507.3 292 81.2
ClCG08G013470 Citrullus lanatus HOM05D005419 ORTHO05D007365 1.0e-141 506.9 313 83.4
Solyc08g029110.3 Solanum lycopersicum HOM05D005419 ORTHO05D007365 1.0e-141 506.9 292 83.6
Sp4g04430 Schrenkiella parvula HOM05D005419 ORTHO05D007365 1.3e-141 506.5 292 81.5
FAN27G2423 Fragaria x ananassa HOM05D005419 ORTHO05D007365 3.0e-141 505.4 292 83.9
Carub.0004s0490 Capsella rubella HOM05D005419 ORTHO05D007365 3.9e-141 505.0 290 81.7
AUR62031558 Chenopodium quinoa HOM05D005419 ORTHO05D007365 8.7e-141 503.8 290 83.8
Sc09g0010330 Simmondsia chinensis HOM05D005419 ORTHO05D007365 1.5e-140 503.1 287 84.0
BcaB08g35172 Brassica carinata HOM05D005419 ORTHO05D007365 1.9e-140 502.7 292 80.5
PSO210G4598 Papaver somniferum HOM05D005419 ORTHO05D007365 2.5e-140 502.3 293 81.6
AL4G16610 Arabidopsis lyrata HOM05D005419 ORTHO05D007365 5.6e-140 501.1 292 80.5
Lj8A726G39 Lonicera japonica HOM05D005419 ORTHO05D007365 7.4e-140 500.7 290 82.4
HPP92_000481 Vanilla planifolia HOM05D005419 ORTHO05D007365 9.6e-140 500.4 291 80.4
Os08g0299000 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D007365 1.3e-139 500.0 290 81.0
Nitab4.5_0007718g0040 Nicotiana tabacum HOM05D005419 ORTHO05D007365 4.8e-139 498.0 292 81.5
SGA_v2.0_scaffold20G09092 Striga asiatica HOM05D005419 ORTHO05D007365 4.8e-139 498.0 292 82.5
AT2G25280 Arabidopsis thaliana HOM05D005419 ORTHO05D007365 6.2e-139 497.7 292 80.1
Sabra18G0026400 Salix brachista HOM05D005419 ORTHO05D007365 1.8e-138 496.1 275 86.2
A09p55730 Brassica napus HOM05D005419 ORTHO05D007365 3.1e-138 495.4 292 78.4
BraA09t40974Z Brassica rapa HOM05D005419 ORTHO05D007365 3.1e-138 495.4 292 78.4
C08p38730 Brassica napus HOM05D005419 ORTHO05D007365 4.0e-138 495.0 292 78.4
BolC8t51443H Brassica oleracea HOM05D005419 ORTHO05D007365 4.0e-138 495.0 292 78.4
BcaC07g40875 Brassica carinata HOM05D005419 ORTHO05D007365 1.5e-137 493.0 287 79.1
vmacro05161 Vaccinium macrocarpon HOM05D005419 ORTHO05D007365 5.8e-137 491.1 273 86.1
Zm00001eb362830 Zea mays HOM05D005419 ORTHO05D007365 1.7e-136 489.6 289 81.3
CANSAT54G2335 Cannabis sativa HOM05D005419 ORTHO05D007365 2.9e-136 488.8 289 78.9
FAN15G2739 Fragaria x ananassa HOM05D005419 ORTHO05D007365 3.8e-136 488.4 278 83.8
CDE03G0272 Ceratophyllum demersum HOM05D005419 ORTHO05D007365 1.1e-135 486.9 291 79.0
Prupe.1G484800 Prunus persica HOM05D005419 ORTHO05D007365 1.9e-135 486.1 275 85.1
MBI15_g25765_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 2.5e-135 485.7 290 79.0
Duzib168G1909 Durio zibethinus HOM05D005419 ORTHO05D007365 6.0e-134 481.1 292 80.8
COL.COLO4_18897 Corchorus olitorius HOM05D005419 ORTHO05D007365 8.2e-131 470.7 251 87.3
Lsat_1_v5_gn_5_157921 Lactuca sativa HOM05D005419 ORTHO05D007365 1.1e-130 470.3 288 79.9
Rhsim12G0212900 Rhododendron simsii HOM05D005419 ORTHO05D007365 1.5e-129 466.5 292 79.1
ATR0767G069 Amborella trichopoda HOM05D005419 ORTHO05D007365 2.6e-129 465.7 273 81.3
CARHR116260 Cardamine hirsuta HOM05D005419 ORTHO05D007365 3.4e-129 465.3 294 74.1
Dinv18189 Davidia involucrata HOM05D005419 ORTHO05D007365 2.8e-123 445.7 292 75.7
Mapoly0065s0048 Marchantia polymorpha HOM05D005419 ORTHO05D007365 2.8e-123 445.7 287 72.5
SMO358G0334 Selaginella moellendorffii HOM05D005419 ORTHO05D007365 6.9e-122 441.0 288 71.9
Hund04483 Selenicereus undatus HOM05D005419 ORTHO05D007365 2.6e-121 439.1 312 68.3
MBI15_g36826_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 9.4e-119 430.6 271 76.8
Pp3c14_17280 Physcomitrium patens HOM05D005419 ORTHO05D007365 1.6e-118 429.9 281 70.5
SEGI_34683 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 1.2e-113 413.7 276 70.3
Pp3c2_14390 Physcomitrium patens HOM05D005419 ORTHO05D007365 2.0e-113 412.9 268 71.6
CBR_g59364 Chara braunii HOM05D005419 ORTHO05D007365 1.1e-108 397.1 281 66.5
SEGI_02513 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 9.7e-100 367.5 223 77.6
Rhsim07G0160700 Rhododendron simsii HOM05D005419 ORTHO05D007365 3.1e-98 362.5 321 61.4
Oeu012280.1 Olea europaea HOM05D005419 ORTHO05D007365 2.2e-88 329.7 190 82.1
THA.LOC104815144 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 3.8e-88 328.9 183 86.9
Cre02.g096200 Chlamydomonas reinhardtii HOM05D005419 ORTHO05D007365 3.6e-86 322.4 289 52.6
CAN.G75.9 Capsicum annuum HOM05D005419 ORTHO05D007365 8.8e-85 317.8 186 82.8
MCO07G667 Micromonas commoda HOM05D005419 ORTHO05D007365 1.6e-81 307.0 297 54.2
Sabra06G0201900 Salix brachista HOM05D005419 ORTHO05D007365 4.5e-81 305.4 173 85.5
PRCOL_00000176 Prasinoderma coloniale HOM05D005419 ORTHO05D007365 5.0e-80 302.0 294 52.0
AagrBONN_evm.TU.Sc2ySwM_368.1912 Anthoceros agrestis HOM05D005419 ORTHO05D007365 2.5e-79 299.7 188 73.9
Haze_26290 Corylus avellana HOM05D005419 ORTHO05D007365 7.8e-73 278.1 293 47.4
Cfa026845 Carpinus fangiana HOM05D005419 ORTHO05D007365 8.3e-59 231.5 310 45.2
Lalb_Chr11g0063641 Lupinus albus HOM05D005419 ORTHO05D007365 1.2e-57 227.6 164 68.9
FAN09G2129 Fragaria x ananassa HOM05D005419 ORTHO05D019206 5.8e-52 208.8 224 52.2
FAN28G2535 Fragaria x ananassa HOM05D005419 ORTHO05D019206 2.4e-50 203.4 221 52.0
Oeu012278.1 Olea europaea HOM05D005419 ORTHO05D007365 1.5e-47 194.1 106 85.8
FAN01G2683 Fragaria x ananassa HOM05D005419 ORTHO05D019206 4.2e-42 176.0 101 84.2
FAN02G2313 Fragaria x ananassa HOM05D005419 ORTHO05D019206 7.1e-42 175.3 102 82.4
FAN21G3387 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.5e-39 167.5 97 83.5
Os05g0310750 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D019206 5.3e-29 132.5 76 84.2
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 8.2e-22 108.6 166 38.6
FAN16G2296 Fragaria x ananassa HOM05D005419 ORTHO05D019206 2.4e-21 107.1 97 61.9
MBI12_g19406_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D242193 1.2e-09 68.2 51 60.8
Prupe.1G567700 Prunus persica HOM05D005419 ORTHO05D019206 1.1e-07 61.6 40 82.5


User provided reference genes

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