Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 7.6e-144 513.8 264 100.0
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 9.3e-126 453.8 272 87.5
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 1.6e-125 453.0 270 86.3
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 3.3e-123 445.3 248 93.1
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 2.0e-91 339.7 258 69.0
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 1.6e-88 330.1 255 67.8
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 2.0e-88 329.7 257 66.5
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 2.0e-88 329.7 267 66.3
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 2.0e-88 329.7 255 67.1
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 2.2e-87 326.2 247 67.2
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 5.0e-87 325.1 256 66.4
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 1.5e-86 323.6 248 66.5
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 1.9e-86 323.2 268 62.7
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 7.2e-86 321.2 260 65.8
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 1.6e-85 320.1 242 66.1
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 6.1e-85 318.2 245 64.9
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 2.3e-84 316.2 259 62.2
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 2.3e-84 316.2 257 62.6
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 3.0e-84 315.8 259 67.6
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 3.0e-84 315.8 239 66.1
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 5.2e-84 315.1 267 61.4
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 6.8e-84 314.7 245 65.7
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 1.2e-83 313.9 261 62.1
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 1.2e-83 313.9 255 62.7
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 1.5e-83 313.5 261 62.8
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 2.6e-83 312.8 243 67.1
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 2.6e-83 312.8 280 61.8
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 7.5e-83 311.2 241 62.2
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 7.5e-83 311.2 251 63.7
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 7.5e-83 311.2 251 63.7
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 9.8e-83 310.8 256 61.7
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 2.2e-82 309.7 238 66.4
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 3.7e-82 308.9 247 64.8
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 6.3e-82 308.1 259 62.2
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 6.3e-82 308.1 259 63.3
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 6.3e-82 308.1 271 61.3
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 8.3e-82 307.8 260 60.8
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 1.4e-81 307.0 251 62.2
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 1.8e-81 306.6 254 61.8
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 2.4e-81 306.2 285 61.8
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 2.4e-81 306.2 295 57.3
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 4.1e-81 305.4 255 61.6
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 9.2e-81 304.3 274 60.9
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 1.2e-80 303.9 259 60.6
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 2.7e-80 302.8 283 56.9
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 4.5e-80 302.0 269 57.6
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 1.3e-79 300.4 259 59.5
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 1.7e-79 300.1 247 65.2
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 1.1e-78 297.4 258 60.1
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 1.1e-78 297.4 265 60.4
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 1.9e-78 296.6 274 56.9
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 1.9e-78 296.6 278 57.2
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 3.3e-78 295.8 233 63.1
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 7.3e-78 294.7 254 63.4
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 2.1e-77 293.1 265 60.4
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 2.1e-77 293.1 268 60.1
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 2.1e-77 293.1 258 57.4
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 3.6e-77 292.4 245 60.8
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 6.1e-77 291.6 268 59.3
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 1.0e-76 290.8 254 61.0
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 1.8e-76 290.0 254 61.4
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 3.0e-76 289.3 226 68.1
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 2.9e-74 282.7 260 56.2
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 5.4e-73 278.5 277 56.0
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 7.0e-73 278.1 241 61.4
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 2.3e-71 273.1 249 60.2
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 3.0e-71 272.7 241 61.4
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 5.0e-71 271.9 231 62.8
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 8.6e-71 271.2 221 63.3
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 2.5e-70 269.6 234 59.0
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 2.5e-70 269.6 247 60.7
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 1.8e-68 263.5 263 56.7
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 2.6e-67 259.6 248 57.7
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 4.4e-67 258.8 249 53.4
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 2.4e-65 253.1 245 52.7
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 5.4e-65 251.9 269 56.5
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 3.0e-63 246.1 221 62.9
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 1.9e-62 243.4 269 49.4
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 3.3e-62 242.7 209 58.4
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 4.3e-62 242.3 207 62.3
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 5.6e-62 241.9 392 40.3
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 4.7e-61 238.8 247 54.7
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 1.4e-60 237.3 254 54.7
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 2.0e-59 233.4 220 54.5
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 9.8e-59 231.1 244 53.7
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 9.8e-59 231.1 239 54.4
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 1.1e-54 217.6 211 56.9
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 5.6e-54 215.3 196 57.7
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.4e-52 210.7 267 48.7
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.4e-52 210.7 267 48.7
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 5.8e-51 205.3 154 66.2
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 7.6e-51 204.9 242 47.9
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 2.9e-50 203.0 194 58.2
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 1.2e-48 197.6 190 58.9
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 1.9e-46 190.3 149 64.4
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 2.8e-45 186.4 159 59.1
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 1.4e-44 184.1 219 49.3
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 3.1e-44 183.0 154 59.7
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 2.2e-42 176.8 152 57.2
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 8.4e-42 174.9 255 42.0
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 1.4e-41 174.1 151 58.9
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 4.2e-41 172.6 214 46.3
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 7.8e-40 168.3 121 64.5
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 3.0e-39 166.4 124 65.3
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 8.7e-39 164.9 126 64.3
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 4.8e-37 159.1 144 61.1
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 3.4e-35 152.9 131 60.3
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 4.9e-34 149.1 138 55.8
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 4.9e-34 149.1 138 55.8
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 1.1e-33 147.9 138 58.7
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 7.1e-33 145.2 138 55.1
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 7.1e-33 145.2 138 55.1
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 2.5e-30 136.7 286 36.0
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 9.6e-30 134.8 141 51.1
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 9.6e-30 134.8 112 58.9
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 8.1e-29 131.7 121 58.7
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 2.2e-26 123.6 104 60.6
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 4.2e-25 119.4 317 27.8
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 8.7e-23 111.7 240 32.5
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 2.5e-22 110.2 72 73.6
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 1.6e-21 107.5 108 55.6
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 7.6e-19 98.6 95 55.8
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 1.0e-18 98.2 95 52.6
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 6.5e-18 95.5 119 44.5
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.1e-17 94.7 69 63.8
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 1.6e-16 90.9 119 44.5
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 4.6e-16 89.4 56 73.2
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 7.9e-16 88.6 140 40.7
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 1.9e-14 84.0 62 67.7
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 3.1e-12 76.6 56 62.5
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 4.5e-11 72.8 72 48.6
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 3.0e-07 60.1 43 60.5


User provided reference genes

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