Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 0.0e+00 2402.5 1197 100.0
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 0.0e+00 2167.5 1198 91.4
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 0.0e+00 1750.7 1208 76.4
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 0.0e+00 1277.7 1225 60.8
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 4.0e-107 394.0 1289 31.1
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.1e-104 386.0 1317 30.1
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 3.5e-103 380.9 1299 29.6
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 5.8e-98 363.6 1340 29.5
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 8.1e-92 343.2 1308 28.4
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.8e-91 342.0 1304 28.2
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 9.2e-88 329.7 1303 28.8
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 8.6e-86 323.2 1310 28.2
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 3.1e-83 314.7 1306 27.9
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 6.8e-83 313.5 1288 28.0
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 9.9e-82 309.7 1216 29.1
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.1e-79 302.0 1231 28.2
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 8.1e-76 290.0 1285 27.2
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 2.6e-74 285.0 1360 26.6
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 7.6e-74 283.5 1268 27.9
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 7.6e-74 283.5 1328 26.7
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 2.2e-73 282.0 1251 28.1
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 2.9e-73 281.6 1227 28.4
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 6.4e-73 280.4 1298 28.4
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 8.4e-73 280.0 1261 27.1
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 3.2e-72 278.1 1314 28.5
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 3.2e-72 278.1 1297 26.7
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 7.1e-72 276.9 1310 27.2
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 7.1e-72 276.9 1263 26.9
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 4.6e-71 274.2 1328 26.4
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 6.0e-71 273.9 1313 27.6
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 7.8e-71 273.5 1295 26.6
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.6e-68 265.8 1295 26.2
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 2.4e-67 261.9 1116 26.9
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 9.0e-67 260.0 1296 27.0
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.6e-66 258.5 1278 26.5
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 9.9e-66 256.5 1298 26.6
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 2.2e-65 255.4 1224 27.5
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 2.1e-63 248.8 1243 28.2
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.1e-61 243.0 1078 27.4
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 9.6e-61 240.0 1319 25.9
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 1.6e-60 239.2 1254 27.4
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 3.1e-59 235.0 1254 27.8
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 1.5e-58 232.6 1260 27.4
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 1.5e-58 232.6 1265 25.4
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 3.4e-58 231.5 1258 27.3
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 1.2e-55 223.0 1258 26.4
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 1.2e-55 223.0 1251 26.1
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 1.6e-55 222.6 1261 27.5
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 6.0e-55 220.7 1286 25.4
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 8.7e-54 216.9 1254 26.8
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 7.4e-53 213.8 1218 26.8
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 5.3e-51 207.6 1219 24.4
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 1.0e-46 193.4 1271 24.6
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 3.0e-46 191.8 1257 25.1
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 2.2e-44 185.7 1240 25.0
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 2.8e-44 185.3 1199 25.4
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 1.3e-41 176.4 1260 24.4
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 1.7e-41 176.0 973 25.7
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 2.7e-39 168.7 1238 24.3
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 2.5e-37 162.2 1321 23.8
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 4.3e-37 161.4 1318 23.3
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 2.2e-36 159.1 1097 24.0
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 1.8e-35 156.0 1298 24.2
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 3.9e-30 138.3 816 26.1
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 3.9e-30 138.3 1276 23.9
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 3.3e-29 135.2 621 27.9
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 4.4e-29 134.8 554 27.1
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 9.1e-27 127.1 1305 23.9
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 3.4e-26 125.2 1240 24.0
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 7.7e-26 124.0 1301 23.1
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 1.3e-25 123.2 1310 23.1
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 2.9e-25 122.1 1280 23.2
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 3.8e-25 121.7 1294 22.6
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 2.1e-23 115.9 1278 23.1
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 6.1e-23 114.4 1245 23.5
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 1.0e-22 113.6 1228 23.0
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.4e-22 113.2 1313 22.6
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 2.3e-22 112.5 1151 23.5
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 5.2e-22 111.3 1294 22.3
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.4e-21 108.2 1274 23.0
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 2.2e-20 105.9 1199 23.8
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 8.2e-20 104.0 1235 23.0
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 8.2e-20 104.0 355 29.6
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 8.2e-20 104.0 1272 22.6
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.4e-19 103.2 1317 22.2
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 5.3e-19 101.3 1224 22.6
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 7.0e-19 100.9 1290 22.7
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 2.6e-18 99.0 1225 22.2
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 3.5e-18 98.6 1279 22.3
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 3.5e-18 98.6 1230 22.0
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 2.2e-17 95.9 1194 23.1
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.9e-16 92.8 1236 22.2
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.9e-16 92.8 462 25.5
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 1.9e-16 92.8 632 25.2
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.5e-16 92.4 462 25.5
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 5.5e-16 91.3 1247 22.2
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 7.2e-16 90.9 450 25.3
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.0e-14 87.0 363 27.0
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 1.4e-14 86.7 581 23.8
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.4e-14 86.7 569 26.0
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.0e-14 85.5 297 28.3
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 2.0e-13 82.8 1202 23.2
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 2.8e-12 79.0 1194 22.4
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 4.8e-12 78.2 510 25.3
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 1.1e-11 77.0 505 26.1
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 1.1e-11 77.0 505 26.1
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 1.1e-11 77.0 505 26.1
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 1.1e-11 77.0 513 25.0
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 7.0e-11 74.3 510 24.9
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 9.1e-11 73.9 368 24.7
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 2.0e-10 72.8 545 24.2
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.7e-09 69.7 546 24.2
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 2.9e-09 68.9 1304 22.5
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 3.8e-09 68.6 104 42.3
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 6.5e-09 67.8 117 36.8
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 6.5e-09 67.8 1201 21.6
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 8.5e-09 67.4 608 23.8
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 1.5e-08 66.6 1224 20.7
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 2.5e-08 65.9 570 22.8
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 3.2e-08 65.5 245 32.7
Lalb_Chr22g0352251 Lupinus albus HOM05D004021 ORTHO05D003767 7.2e-08 64.3 190 26.8
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 9.4e-08 63.9 631 24.6
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 2.1e-07 62.8 565 25.7
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 2.1e-07 62.8 565 25.7
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 2.1e-07 62.8 562 25.1
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 6.1e-07 61.2 631 24.4
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 1.8e-06 59.7 1236 19.4
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 5.2e-06 58.2 742 23.0
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 6.8e-06 57.8 264 29.9
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 6.8e-06 57.8 529 24.6
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 6.8e-06 57.8 137 32.1


User provided reference genes

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