Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G029710 Cucumis sativus L. HOM05D006862 ORTHO05D008726 5.7e-127 457.6 233 100.0
MELO3C011029.2 Cucumis melo HOM05D006862 ORTHO05D008726 3.2e-122 441.8 235 95.7
ClCG08G011130 Citrullus lanatus HOM05D006862 ORTHO05D008726 1.8e-112 409.5 223 92.4
Sed0019597 Sechium edule HOM05D006862 ORTHO05D008726 3.1e-109 398.7 235 85.5
QL12p036953 Quercus lobata HOM05D006862 ORTHO05D008726 4.1e-93 345.1 233 72.5
TAR381G1571 Trochodendron aralioides HOM05D006862 ORTHO05D008726 4.1e-93 345.1 230 73.5
Dinv32268 Davidia involucrata HOM05D006862 ORTHO05D005283 6.0e-92 341.3 233 72.1
Thecc.08G105700 Theobroma cacao HOM05D006862 ORTHO05D008726 7.8e-92 340.9 235 72.3
Duzib093G2032 Durio zibethinus HOM05D006862 ORTHO05D008726 1.7e-91 339.7 233 72.1
Potri.005G164300 Populus trichocarpa HOM05D006862 ORTHO05D008726 3.9e-91 338.6 224 73.2
Sabra05G0123800 Salix brachista HOM05D006862 ORTHO05D008726 3.9e-91 338.6 223 74.0
CiPaw.08G045700 Carya illinoinensis HOM05D006862 ORTHO05D008726 5.0e-91 338.2 233 71.7
Cfa013642 Carpinus fangiana HOM05D006862 ORTHO05D008726 1.5e-90 336.7 212 75.5
Actinidia33490 Actinidia chinensis HOM05D006862 ORTHO05D008726 3.3e-90 335.5 233 71.7
TWI23G1270 Tripterygium wilfordii HOM05D006862 ORTHO05D008726 3.3e-90 335.5 224 72.8
CSS0002443 Camellia sinensis var. sinensis HOM05D006862 ORTHO05D008726 7.3e-90 334.3 233 71.2
Lj7A540T61 Lonicera japonica HOM05D006862 ORTHO05D008726 7.3e-90 334.3 225 73.3
Hma1.2p1_0341F.1_g130400 Hydrangea macrophylla HOM05D006862 ORTHO05D008726 1.2e-89 333.6 234 69.2
TWI56G0923 Tripterygium wilfordii HOM05D006862 ORTHO05D008726 2.8e-89 332.4 224 72.8
CSS0011508 Camellia sinensis var. sinensis HOM05D006862 ORTHO05D008726 1.1e-88 330.5 233 70.8
Gorai.002G140500 Gossypium raimondii HOM05D006862 ORTHO05D008726 1.8e-88 329.7 224 71.9
GSVIVG01020916001 Vitis vinifera HOM05D006862 ORTHO05D008726 3.1e-88 328.9 250 66.4
Manes.18G066800 Manihot esculenta HOM05D006862 ORTHO05D008726 6.8e-88 327.8 224 71.9
Gohir.A01G127200 Gossypium hirsutum HOM05D006862 ORTHO05D008726 2.0e-87 326.2 224 70.1
Gohir.D01G114900 Gossypium hirsutum HOM05D006862 ORTHO05D008726 5.8e-87 324.7 224 71.4
CANSAT01G2845 Cannabis sativa HOM05D006862 ORTHO05D008726 1.7e-86 323.2 233 68.2
Glyma.09G040700 Glycine max HOM05D006862 ORTHO05D008726 2.9e-86 322.4 234 68.8
Glyma.15G146200 Glycine max HOM05D006862 ORTHO05D008726 4.9e-86 321.6 234 68.4
Prupe.1G518300 Prunus persica HOM05D006862 ORTHO05D008726 6.4e-86 321.2 224 69.6
PGR042G4010 Punica granatum HOM05D006862 ORTHO05D008726 8.3e-86 320.9 233 67.8
EL10Ac1g01209 Beta vulgaris HOM05D006862 ORTHO05D008726 2.4e-85 319.3 220 67.7
AUR62027770 Chenopodium quinoa HOM05D006862 ORTHO05D008726 2.4e-85 319.3 220 67.7
Ciclev10002323m.g Citrus clementina HOM05D006862 ORTHO05D008726 9.2e-85 317.4 225 69.8
Eucgr.F00331 Eucalyptus grandis HOM05D006862 ORTHO05D008726 1.2e-84 317.0 233 67.0
Cpa.g.sc36.141 Carica papaya HOM05D006862 ORTHO05D008726 1.6e-84 316.6 223 70.9
Ca_01890_v3 Cicer arietinum L. HOM05D006862 ORTHO05D008726 1.6e-84 316.6 225 68.4
Nn1g05382 Nelumbo nucifera HOM05D006862 ORTHO05D008726 2.7e-84 315.8 227 66.1
Aqoxy2G03696 Aquilegia oxysepala HOM05D006862 ORTHO05D008726 3.5e-84 315.5 233 65.2
COL.COLO4_16384 Corchorus olitorius HOM05D006862 ORTHO05D008726 4.6e-84 315.1 204 75.5
Sc23g0003870 Simmondsia chinensis HOM05D006862 ORTHO05D008726 1.7e-83 313.2 233 65.2
Lalb_Chr18g0059041 Lupinus albus HOM05D006862 ORTHO05D008726 8.6e-83 310.8 223 68.2
MSTRG.28166 Avicennia marina HOM05D006862 ORTHO05D008726 4.3e-82 308.5 234 65.0
MBI05_g39046_MAGBIO Magnolia biondii HOM05D006862 ORTHO05D008726 9.5e-82 307.4 233 65.2
DCAR_031876 Daucus carota HOM05D006862 ORTHO05D008726 1.6e-81 306.6 224 67.0
VMungo1309G2304 Vigna mungo HOM05D006862 ORTHO05D008726 3.6e-81 305.4 223 65.5
Oeu009615.1 Olea europaea HOM05D006862 ORTHO05D008726 4.7e-81 305.1 221 70.1
vmacro13466 Vaccinium macrocarpon HOM05D006862 ORTHO05D008726 4.7e-81 305.1 224 67.4
Nitab4.5_0000210g0120 Nicotiana tabacum HOM05D006862 ORTHO05D008726 6.2e-81 304.7 225 68.0
RcHm_v2.0_Chr7g0238691 Rosa chinensis HOM05D006862 ORTHO05D008726 6.2e-81 304.7 234 63.2
FAN04G2864 Fragaria x ananassa HOM05D006862 ORTHO05D008726 8.1e-81 304.3 225 64.4
Ah.12g052780 Amaranthus hybridus HOM05D006862 ORTHO05D008726 1.1e-80 303.9 220 67.3
MBI05_g44690_MAGBIO Magnolia biondii HOM05D006862 ORTHO05D008726 1.1e-80 303.9 233 64.8
Medtr2g035310 Medicago truncatula HOM05D006862 ORTHO05D008726 1.4e-80 303.5 216 66.7
Hund16900 Selenicereus undatus HOM05D006862 ORTHO05D008726 2.3e-80 302.8 203 70.0
FAN13G0737 Fragaria x ananassa HOM05D006862 ORTHO05D008726 4.0e-80 302.0 225 64.0
Sopen10g008800 Solanum pennellii HOM05D006862 ORTHO05D008726 4.0e-80 302.0 234 64.1
Nitab4.5_0003428g0010 Nicotiana tabacum HOM05D006862 ORTHO05D008726 8.9e-80 300.8 225 66.7
Psat1g156880 Pisum sativum HOM05D006862 ORTHO05D008726 8.9e-80 300.8 216 67.6
Atru.chr13.1175 Acer truncatum HOM05D006862 ORTHO05D008726 1.2e-79 300.4 237 65.0
MD08G1184100 Malus domestica HOM05D006862 ORTHO05D008726 2.6e-79 299.3 226 63.3
Phvul.009G253100 Phaseolus vulgaris HOM05D006862 ORTHO05D008726 2.6e-79 299.3 234 64.1
THA.LOC104806470 Tarenaya hassleriana HOM05D006862 ORTHO05D008726 2.6e-79 299.3 225 64.9
FAN18G1242 Fragaria x ananassa HOM05D006862 ORTHO05D008726 7.6e-79 297.7 225 63.6
PSO447G0083 Papaver somniferum HOM05D006862 ORTHO05D008726 9.9e-79 297.4 224 64.3
TPR.G28474 Trifolium pratense HOM05D006862 ORTHO05D008726 9.9e-79 297.4 216 67.1
FvH4_5g37140 Fragaria vesca HOM05D006862 ORTHO05D008726 2.9e-78 295.8 225 63.1
arahy.Tifrunner.gnm1.ann1.F2RQ7H Arachis hypogaea HOM05D006862 ORTHO05D008726 5.4e-77 291.6 216 66.7
arahy.Tifrunner.gnm1.ann1.ZLG2GC Arachis hypogaea HOM05D006862 ORTHO05D008726 7.1e-77 291.2 216 67.1
CAN.G1432.28 Capsicum annuum HOM05D006862 ORTHO05D008726 9.2e-77 290.8 224 64.7
Aa31LG6G8550 Aethionema arabicum HOM05D006862 ORTHO05D008726 1.6e-76 290.0 225 61.8
PSO210G6562 Papaver somniferum HOM05D006862 ORTHO05D008726 3.5e-76 288.9 228 62.7
Os07g0151300 Oryza sativa ssp. japonica HOM05D006862 ORTHO05D008726 6.0e-76 288.1 224 64.3
HPP92_002325 Vanilla planifolia HOM05D006862 ORTHO05D008726 6.0e-76 288.1 218 63.3
Migut.N01765 Erythranthe guttata HOM05D006862 ORTHO05D008726 7.8e-76 287.7 228 61.4
Thhalv10001858m.g Eutrema salsugineum HOM05D006862 ORTHO05D008726 7.8e-76 287.7 225 62.2
Sp1g29820 Schrenkiella parvula HOM05D006862 ORTHO05D008726 1.0e-75 287.3 225 61.3
SalBow5G3922 Salvia bowleyana HOM05D006862 ORTHO05D008726 1.3e-75 287.0 213 64.8
CDE10G0559 Ceratophyllum demersum HOM05D006862 ORTHO05D008726 1.5e-74 283.5 207 64.3
AL1G49800 Arabidopsis lyrata HOM05D006862 ORTHO05D008726 1.6e-73 280.0 227 61.7
AT1G34770 Arabidopsis thaliana HOM05D006862 ORTHO05D008726 2.8e-73 279.3 225 60.9
BcaB04g17850 Brassica carinata HOM05D006862 ORTHO05D008726 3.6e-73 278.9 225 60.0
Carub.0001s3270 Capsella rubella HOM05D006862 ORTHO05D008726 4.7e-73 278.5 225 60.9
BraA08t32838Z Brassica rapa HOM05D006862 ORTHO05D008726 3.1e-72 275.8 225 58.7
BcaC07g37529 Brassica carinata HOM05D006862 ORTHO05D008726 4.0e-72 275.4 225 58.7
BolC8t47847H Brassica oleracea HOM05D006862 ORTHO05D008726 4.0e-72 275.4 225 58.7
CARHR034040 Cardamine hirsuta HOM05D006862 ORTHO05D008726 8.9e-72 274.2 227 59.9
A08p08160 Brassica napus HOM05D006862 ORTHO05D008726 2.0e-71 273.1 226 58.0
Zm00001eb300080 Zea mays HOM05D006862 ORTHO05D008726 2.6e-71 272.7 228 60.1
SGA_v2.0_scaffold43G16518 Striga asiatica HOM05D006862 ORTHO05D008726 9.9e-71 270.8 225 58.7
Cc02_g24490 Coffea canephora HOM05D006862 ORTHO05D008726 2.9e-70 269.2 220 63.6
ECA236G4229 Erigeron canadensis HOM05D006862 ORTHO05D008726 2.9e-70 269.2 221 60.2
Lsat_1_v5_gn_7_11121 Lactuca sativa HOM05D001703 ORTHO05D005708 3.5e-68 262.3 216 59.7
AUR62018925 Chenopodium quinoa HOM05D006862 ORTHO05D008726 1.8e-64 250.0 180 65.0
unitig_22.g6705 Utricularia gibba HOM05D006862 ORTHO05D008726 1.1e-61 240.7 254 51.2
Haze_22271 Corylus avellana HOM05D006862 ORTHO05D008726 7.1e-61 238.0 151 78.1
RcHm_v2.0_Chr7g0243981 Rosa chinensis HOM05D006862 ORTHO05D008726 2.8e-57 226.1 176 64.2
Hma1.2p1_0341F.1_g130390 Hydrangea macrophylla HOM05D006862 ORTHO05D008726 1.1e-56 224.2 156 67.9
ATR0782G115 Amborella trichopoda HOM05D006862 ORTHO05D008726 1.4e-53 213.8 219 48.4
Psat1g146360 Pisum sativum HOM05D006862 ORTHO05D008726 3.4e-47 192.6 147 64.6
AagrBONN_evm.TU.Sc2ySwM_344.2907 Anthoceros agrestis HOM05D006862 ORTHO05D008726 1.4e-45 187.2 213 46.0
Pp3c15_18480 Physcomitrium patens HOM05D006862 ORTHO05D008726 1.4e-45 187.2 210 42.4
Solyc10g018870.2 Solanum lycopersicum HOM05D006862 ORTHO05D008726 2.7e-44 183.0 136 61.8
Ciclev10006681m.g Citrus clementina HOM05D006862 ORTHO05D008726 9.7e-42 174.5 202 50.5
Mapoly0069s0077 Marchantia polymorpha HOM05D006862 ORTHO05D008726 4.1e-40 169.1 220 40.5
HanXRQChr04g0123461 Helianthus annuus HOM05D006862 ORTHO05D008726 2.2e-38 163.3 155 52.9
Psat7g091920 Pisum sativum HOM05D006862 ORTHO05D008726 4.6e-36 155.6 118 65.3
CBR_g23028 Chara braunii HOM05D006862 ORTHO05D008726 1.5e-34 150.6 217 37.3
CBR_g8943 Chara braunii HOM05D006862 ORTHO05D008726 4.3e-34 149.1 215 36.7
MCO09G856 Micromonas commoda HOM05D006862 ORTHO05D008726 8.2e-33 144.8 217 36.4
Peaxi162Scf00001g05620 Petunia axillaris HOM05D006862 ORTHO05D008726 5.9e-31 138.7 164 47.0
FAN08G1952 Fragaria x ananassa HOM05D006862 ORTHO05D008726 2.1e-28 130.2 91 68.1
Lsat_1_v5_gn_4_149521 Lactuca sativa HOM05D006862 ORTHO05D008726 4.7e-28 129.0 109 57.8
SalBow4G2162 Salvia bowleyana HOM05D006862 ORTHO05D008726 1.4e-19 100.9 83 59.0
PRCOL_00000002 Prasinoderma coloniale HOM05D006862 ORTHO05D008726 5.3e-16 89.0 214 28.5
Lsat_1_v5_gn_2_48340 Lactuca sativa HOM05D006862 ORTHO05D008726 4.7e-12 75.9 88 46.6
Lsat_1_v5_gn_6_41620 Lactuca sativa HOM05D006862 ORTHO05D008726 4.7e-12 75.9 88 46.6
MD15G1370600 Malus domestica HOM05D006862 ORTHO05D008726 9.1e-08 61.6 43 65.1
Rhsim07G0033200 Rhododendron simsii HOM05D006089 ORTHO05D007345 3.8e-06 56.2 39 64.1


User provided reference genes

Program Settings