Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 0.0e+00 1742.6 867 100.0
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 0.0e+00 1467.6 867 84.8
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 0.0e+00 1338.6 899 78.8
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 0.0e+00 1329.7 875 77.1
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 1.7e-253 879.8 918 52.3
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 6.6e-253 877.9 903 53.0
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 8.3e-240 834.3 903 51.4
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 4.1e-239 832.0 879 52.1
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 1.2e-238 830.5 883 51.0
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 1.6e-238 830.1 872 51.5
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 2.3e-237 826.2 887 51.0
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 3.6e-235 818.9 872 50.9
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 1.3e-232 810.4 916 49.9
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 8.4e-232 807.7 922 48.0
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 8.4e-232 807.7 922 47.8
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 1.0e-229 800.8 922 48.4
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 2.3e-229 799.7 891 49.7
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 4.3e-228 795.4 891 49.6
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 4.0e-226 788.9 891 49.3
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 1.2e-225 787.3 873 50.1
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 1.7e-224 783.5 899 48.8
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 4.6e-222 775.4 897 48.9
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 3.6e-219 765.8 897 48.6
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 1.1e-218 764.2 872 48.1
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 2.4e-218 763.1 874 49.7
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 3.4e-217 759.2 881 46.3
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 2.4e-215 753.1 874 46.8
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 4.2e-215 752.3 868 47.0
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 9.3e-215 751.1 873 47.1
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 2.7e-214 749.6 868 47.2
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 3.5e-214 749.2 1116 41.9
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 1.0e-213 747.7 872 46.9
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 5.6e-212 741.9 803 50.6
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 2.1e-211 740.0 919 44.5
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 1.1e-210 737.6 875 46.1
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 8.4e-208 728.0 1112 40.6
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 1.1e-204 717.6 909 44.9
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 2.5e-204 716.5 860 45.9
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 5.7e-204 715.3 887 44.8
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 1.2e-201 707.6 858 46.6
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 1.1e-199 701.0 885 44.7
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 2.5e-199 699.9 929 43.8
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 4.6e-198 695.7 889 45.1
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 6.1e-198 695.3 879 45.1
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 6.1e-198 695.3 900 43.2
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 1.1e-196 691.0 1118 39.2
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 2.5e-196 689.9 885 46.0
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 4.3e-196 689.1 898 44.0
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 2.8e-195 686.4 897 43.1
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 4.8e-195 685.6 912 43.0
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 6.3e-195 685.3 897 43.0
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 6.3e-195 685.3 1117 38.3
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 5.3e-194 682.2 888 42.9
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 1.5e-193 680.6 887 43.6
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 1.5e-193 680.6 891 43.8
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 2.6e-193 679.9 904 43.9
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 7.7e-193 678.3 898 43.0
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 1.7e-192 677.2 888 42.7
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 1.7e-192 677.2 900 43.2
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 5.0e-192 675.6 911 43.0
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 1.6e-190 670.6 867 44.2
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 2.3e-189 666.8 887 42.8
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 2.3e-189 666.8 881 45.2
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 9.7e-188 661.4 876 45.2
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 1.1e-186 657.9 1102 37.0
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 5.5e-183 645.6 897 41.8
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 7.9e-182 641.7 780 44.6
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 8.8e-181 638.3 882 42.0
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 5.7e-180 635.6 824 43.6
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 9.7e-180 634.8 889 43.3
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 1.3e-179 634.4 849 43.0
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 9.1e-178 628.2 1099 37.4
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 7.2e-175 618.6 891 42.5
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 3.6e-174 616.3 871 41.7
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 4.0e-173 612.8 652 49.5
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 7.4e-172 608.6 879 42.2
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 7.0e-170 602.1 627 51.0
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 2.9e-168 596.7 1060 36.9
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 9.4e-167 591.7 1084 35.3
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 2.7e-166 590.1 826 41.3
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 6.8e-165 585.5 775 42.2
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 1.8e-162 577.4 912 39.8
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 3.1e-162 576.6 1101 34.2
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 5.4e-162 575.9 1060 36.5
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 7.2e-159 565.5 783 43.3
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 1.6e-153 547.7 967 34.5
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.1e-151 541.6 842 40.9
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 2.3e-149 533.9 751 42.5
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 4.7e-134 483.0 693 41.3
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.5e-132 478.0 1026 31.6
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 7.5e-132 475.7 499 50.1
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 4.1e-130 469.9 486 52.9
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 1.0e-128 465.3 963 33.2
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 4.7e-126 456.4 687 39.6
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 1.2e-124 451.8 873 33.8
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 4.0e-117 426.8 546 44.1
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 2.6e-116 424.1 580 40.7
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 9.3e-114 415.6 956 30.5
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 2.1e-110 404.4 947 32.8
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 3.4e-108 397.1 530 43.8
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 3.2e-106 390.6 485 44.1
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 1.3e-102 378.6 631 36.0
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 5.3e-101 373.2 592 36.8
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 6.4e-99 366.3 777 32.2
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 6.2e-94 349.7 931 28.4
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 2.3e-88 331.3 1189 26.3
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 3.0e-88 330.9 721 32.7
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 1.1e-87 328.9 383 47.0
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 4.5e-76 290.4 470 38.3
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 1.2e-73 282.3 372 43.3
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 1.7e-62 245.4 369 39.8
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 2.8e-62 244.6 677 29.8
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 1.0e-59 236.1 196 61.7
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 2.7e-57 228.0 373 36.7
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 1.0e-56 226.1 306 44.8
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 2.3e-56 224.9 939 26.0
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 5.2e-56 223.8 155 67.1
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 4.8e-54 217.2 197 54.8
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 7.0e-53 213.4 224 50.9
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 2.0e-52 211.8 621 27.4
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 2.9e-51 208.0 264 46.6
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 2.7e-44 184.9 192 49.0
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 1.3e-43 182.6 192 48.4
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 4.7e-41 174.1 187 48.1
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 8.0e-41 173.3 269 41.6
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 3.5e-36 157.9 346 32.4
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 4.6e-28 131.0 805 21.9
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 1.5e-26 125.9 90 62.2
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 2.8e-25 121.7 105 54.3
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 3.6e-25 121.3 226 31.0
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 2.3e-19 102.1 85 61.2
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 2.3e-19 102.1 118 46.6
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 1.6e-17 95.9 193 34.2
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 1.9e-10 72.4 121 38.0
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 5.6e-10 70.9 162 31.5
SHI24232 Sapria himalayana HOM05D005399 ORTHO05D006347 7.6e-07 60.5 29 75.9
HPP92_003388 Vanilla planifolia HOM05D004736 ORTHO05D006424 2.2e-06 58.9 140 27.1
Eucgr.A02398 Eucalyptus grandis HOM05D004736 ORTHO05D006424 8.4e-06 57.0 131 26.0
SMO236G0112 Selaginella moellendorffii HOM05D004736 ORTHO05D006424 8.4e-06 57.0 128 27.3


User provided reference genes

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