Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G028480 Cucumis sativus L. HOM05D007745 ORTHO05D009771 1.5e-179 632.9 345 100.0
MELO3C010923.2 Cucumis melo HOM05D007745 ORTHO05D009771 6.7e-148 527.7 336 86.3
ClCG08G015320 Citrullus lanatus HOM05D007745 ORTHO05D009771 7.0e-97 358.2 250 75.6
Sed0003155 Sechium edule HOM05D007745 ORTHO05D009771 1.1e-60 238.0 344 47.4
Sed0012259 Sechium edule HOM05D007745 ORTHO05D009771 1.3e-55 221.1 343 45.2
Manes.05G163200 Manihot esculenta HOM05D007745 ORTHO05D009771 2.4e-44 183.7 349 39.3
Prupe.1G383200 Prunus persica HOM05D007745 ORTHO05D009771 2.4e-44 183.7 350 38.9
Sed0005896 Sechium edule HOM05D007745 ORTHO05D009771 3.2e-41 173.3 191 51.8
Potri.014G041300 Populus trichocarpa HOM05D007745 ORTHO05D009771 4.2e-41 172.9 302 37.7
Sabra14G0030100 Salix brachista HOM05D007745 ORTHO05D009771 1.0e-39 168.3 347 35.4
CANSAT25G3090 Cannabis sativa HOM05D007745 ORTHO05D009771 3.9e-39 166.4 351 38.7
Haze_17626 Corylus avellana HOM05D007745 ORTHO05D009771 1.2e-35 154.8 351 35.9
RcHm_v2.0_Chr6g0300521 Rosa chinensis HOM05D007745 ORTHO05D009771 5.8e-35 152.5 349 34.7
Dinv36046 Davidia involucrata HOM05D007745 ORTHO05D009771 3.8e-34 149.8 350 38.0
Ciclev10001389m.g Citrus clementina HOM05D007745 ORTHO05D009771 4.9e-34 149.4 357 34.7
Cfa018439 Carpinus fangiana HOM05D007745 ORTHO05D009771 1.1e-33 148.3 350 34.3
Gohir.A06G011800 Gossypium hirsutum HOM05D007745 ORTHO05D009771 4.6e-32 142.9 357 35.9
Lj4A44T41 Lonicera japonica HOM05D007745 ORTHO05D009771 7.9e-32 142.1 350 34.0
Gohir.D06G009200 Gossypium hirsutum HOM05D007745 ORTHO05D009771 2.3e-31 140.6 357 34.2
Sed0002042 Sechium edule HOM05D007745 ORTHO05D009771 3.0e-31 140.2 142 53.5
QL02p007506 Quercus lobata HOM05D007745 ORTHO05D009771 8.7e-31 138.7 343 34.4
Dinv39385 Davidia involucrata HOM05D000626 ORTHO05D000824 2.5e-30 137.1 229 39.3
Hma1.2p1_0203F.1_g086690 Hydrangea macrophylla HOM05D007745 ORTHO05D009771 3.3e-30 136.7 347 33.7
GSVIVG01009651001 Vitis vinifera HOM05D007745 ORTHO05D009771 4.3e-30 136.3 348 33.3
CiPaw.16G054300 Carya illinoinensis HOM05D007745 ORTHO05D009771 9.6e-30 135.2 352 35.5
Gorai.010G012000 Gossypium raimondii HOM05D007745 ORTHO05D009771 2.1e-29 134.0 357 33.1
MD15G1032200 Malus domestica HOM05D007745 ORTHO05D009771 3.7e-29 133.3 359 34.5
FAN15G0796 Fragaria x ananassa HOM05D007745 ORTHO05D009771 6.2e-29 132.5 348 34.2
FvH4_2g40240 Fragaria vesca HOM05D007745 ORTHO05D009771 8.1e-29 132.1 349 34.4
FAN20G1509 Fragaria x ananassa HOM05D007745 ORTHO05D009771 1.8e-28 131.0 348 34.5
FAN27G0058 Fragaria x ananassa HOM05D007745 ORTHO05D009771 2.4e-28 130.6 348 36.8
Duzib041G0319 Durio zibethinus HOM05D007745 ORTHO05D009771 7.6e-27 125.6 362 38.1
vmacro21613 Vaccinium macrocarpon HOM05D007745 ORTHO05D009771 9.9e-27 125.2 346 32.1
Rhsim06G0036400 Rhododendron simsii HOM05D007745 ORTHO05D009771 1.4e-25 121.3 349 30.9
Duzib093G2234 Durio zibethinus HOM05D007745 ORTHO05D009771 3.2e-25 120.2 346 37.6
PGR031G1654 Punica granatum HOM05D007745 ORTHO05D009771 2.1e-24 117.5 353 32.6
TAR628G0088 Trochodendron aralioides HOM05D007745 ORTHO05D009771 2.7e-24 117.1 359 30.1
Actinidia22565 Actinidia chinensis HOM05D007745 ORTHO05D009771 1.8e-23 114.4 231 36.4
Thecc.08G022500 Theobroma cacao HOM05D007745 ORTHO05D009771 3.9e-23 113.2 346 31.5
ECA247G2825 Erigeron canadensis HOM05D000121 ORTHO05D001726 1.1e-22 111.7 266 33.1
CSS0036766 Camellia sinensis var. sinensis HOM05D007745 ORTHO05D009771 1.5e-22 111.3 282 33.3
MSTRG.24305 Avicennia marina HOM05D007745 ORTHO05D009771 4.8e-21 106.3 356 29.5
SGA_v2.0_scaffold14G07060 Striga asiatica HOM05D007745 ORTHO05D009771 1.8e-20 104.4 242 31.4
Nitab4.5_0000110g0250 Nicotiana tabacum HOM05D007745 ORTHO05D009771 9.0e-20 102.1 347 32.9
Nn5g29499 Nelumbo nucifera HOM05D007745 ORTHO05D009771 1.2e-19 101.7 372 30.4
SalBow8G3493 Salvia bowleyana HOM05D007745 ORTHO05D009771 1.5e-19 101.3 284 30.3
SalBow8G4556 Salvia bowleyana HOM05D007745 ORTHO05D009771 1.5e-19 101.3 284 30.3
Eucgr.F01537 Eucalyptus grandis HOM05D007745 ORTHO05D009771 2.6e-19 100.5 349 30.4
CiPaw.15G073300 Carya illinoinensis HOM05D007745 ORTHO05D009771 4.5e-19 99.8 354 34.7
Nitab4.5_0010511g0010 Nicotiana tabacum HOM05D007745 ORTHO05D009771 1.0e-18 98.6 224 33.0
Oeu015593.1 Olea europaea HOM05D007745 ORTHO05D009771 1.0e-18 98.6 351 30.8
Gohir.A05G196400 Gossypium hirsutum HOM05D007745 ORTHO05D009771 6.5e-18 95.9 352 28.4
Eucgr.F01538 Eucalyptus grandis HOM05D007745 ORTHO05D009771 1.9e-17 94.4 347 28.5
Eucgr.F01539 Eucalyptus grandis HOM05D007745 ORTHO05D009771 3.2e-17 93.6 343 29.2
Gorai.009G204700 Gossypium raimondii HOM05D007745 ORTHO05D009771 1.2e-16 91.7 352 27.6
CAN.G1126.17 Capsicum annuum HOM05D007745 ORTHO05D009771 2.1e-16 90.9 221 32.6
HanXRQChr04g0104891 Helianthus annuus HOM05D007745 ORTHO05D009771 3.5e-16 90.1 276 30.4
Eucgr.A00494 Eucalyptus grandis HOM05D007745 ORTHO05D009771 4.6e-16 89.7 271 31.0
Eucgr.F01536 Eucalyptus grandis HOM05D007745 ORTHO05D009771 4.6e-16 89.7 291 28.5
Gohir.D05G199500 Gossypium hirsutum HOM05D007745 ORTHO05D009771 7.9e-16 89.0 358 27.9
MSTRG.22294 Avicennia marina HOM05D007745 ORTHO05D009771 2.3e-15 87.4 88 42.0
Peaxi162Scf00057g00084 Petunia axillaris HOM05D007745 ORTHO05D009771 3.9e-15 86.7 357 35.6
PGSC0003DMG400027855 Solanum tuberosum HOM05D007745 ORTHO05D009771 3.9e-15 86.7 345 28.1
DCAR_012752 Daucus carota HOM05D007745 ORTHO05D009771 5.1e-15 86.3 293 27.6
HanXRQChr02g0038981 Helianthus annuus HOM05D007745 ORTHO05D009771 5.1e-15 86.3 221 33.0
CAN.G1126.15 Capsicum annuum HOM05D007745 ORTHO05D009771 1.5e-14 84.7 292 27.4
Sopen04g033520 Solanum pennellii HOM05D007745 ORTHO05D009771 1.5e-14 84.7 225 31.1
Solyc04g079940.3 Solanum lycopersicum HOM05D007745 ORTHO05D009771 7.4e-14 82.4 226 30.5
HanXRQChr04g0104881 Helianthus annuus HOM05D007745 ORTHO05D009771 1.6e-13 81.3 290 27.6
Prupe.1G390000 Prunus persica HOM05D007745 ORTHO05D009771 2.2e-13 80.9 156 33.3
Nn1g05100 Nelumbo nucifera HOM05D000010 ORTHO05D009771 4.8e-13 79.7 217 33.2
Migut.N00516 Erythranthe guttata HOM05D007745 ORTHO05D009771 1.1e-12 78.6 266 28.6
Sc02g0006490 Simmondsia chinensis HOM05D007745 ORTHO05D009771 1.1e-12 78.6 359 29.0
Cpa.g.sc64.53 Carica papaya HOM05D007745 ORTHO05D009771 1.5e-11 74.7 184 32.6
PSO675G1126 Papaver somniferum HOM05D007745 ORTHO05D009771 2.0e-11 74.3 240 30.8
Cc10_g03330 Coffea canephora HOM05D007745 ORTHO05D009771 1.1e-09 68.6 218 30.3
Eucgr.F01535 Eucalyptus grandis HOM05D007745 ORTHO05D009771 3.2e-09 67.0 87 35.6
PSO541G3078 Papaver somniferum HOM05D007745 ORTHO05D009771 3.2e-09 67.0 357 26.6
HanXRQChr09g0268481 Helianthus annuus HOM05D007745 ORTHO05D009771 4.2e-09 66.6 277 28.5
Lsat_1_v5_gn_4_122120 Lactuca sativa HOM05D007745 ORTHO05D009771 1.6e-08 64.7 295 25.1
MBI16_g33266_MAGBIO Magnolia biondii HOM05D007745 ORTHO05D009771 4.6e-08 63.2 344 25.0
Lsat_1_v5_gn_1_18141 Lactuca sativa HOM05D007745 ORTHO05D009771 6.1e-08 62.8 308 26.0
MBI16_g27546_MAGBIO Magnolia biondii HOM05D007745 ORTHO05D009771 1.0e-07 62.0 199 30.2
Glyma.11G212400 Glycine max HOM05D000010 ORTHO05D000063 1.5e-06 58.2 113 29.2
ECA232G0976 Erigeron canadensis HOM05D007745 ORTHO05D009771 2.5e-06 57.4 299 27.4
CSS0006031 Camellia sinensis var. sinensis HOM05D007745 ORTHO05D009771 4.3e-06 56.6 293 28.7
Glyma.18G043900 Glycine max HOM05D000010 ORTHO05D000063 9.7e-06 55.5 113 28.3
HanXRQChr02g0038991 Helianthus annuus HOM05D007745 ORTHO05D009771 9.7e-06 55.5 118 37.3


User provided reference genes

Program Settings