Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G028190 Cucumis sativus L. HOM05D002914 ORTHO05D003196 2.1e-59 232.3 125 100.0
ClCG08G015580 Citrullus lanatus HOM05D002914 ORTHO05D003196 7.5e-49 197.2 128 86.7
MELO3C010895.2 Cucumis melo HOM05D002914 ORTHO05D003196 9.1e-47 190.3 125 85.6
Sed0019897 Sechium edule HOM05D002914 ORTHO05D003196 1.8e-42 176.0 127 76.4
Sed0007891 Sechium edule HOM05D002914 ORTHO05D003196 7.5e-33 144.1 127 68.5
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 3.7e-24 115.2 122 51.6
TWI36G0119 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 1.1e-23 113.6 125 51.2
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 9.2e-23 110.5 123 48.8
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 1.6e-22 109.8 124 49.2
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 6.0e-22 107.8 117 49.6
Solyc01g108330.2 Solanum lycopersicum HOM05D002914 ORTHO05D003196 6.0e-22 107.8 126 50.8
Sopen01g050550 Solanum pennellii HOM05D002914 ORTHO05D003196 6.0e-22 107.8 126 50.8
Lalb_Chr23g0266911 Lupinus albus HOM05D002914 ORTHO05D003196 1.0e-21 107.1 123 48.8
TPR.G40737 Trifolium pratense HOM05D002914 ORTHO05D003196 1.0e-21 107.1 129 52.7
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 3.0e-21 105.5 113 53.1
Prupe.1G441900 Prunus persica HOM05D002914 ORTHO05D003196 8.6e-21 104.0 122 54.1
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 1.5e-20 103.2 78 62.8
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.5e-20 103.2 121 43.8
PGSC0003DMG400025804 Solanum tuberosum HOM05D002914 ORTHO05D003196 1.9e-20 102.8 131 48.1
CANSAT25G0897 Cannabis sativa HOM05D002914 ORTHO05D003196 4.3e-20 101.7 101 56.4
Nitab4.5_0000876g0210 Nicotiana tabacum HOM05D002914 ORTHO05D003196 5.6e-20 101.3 121 44.6
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 7.3e-20 100.9 114 47.4
TAR628G0868 Trochodendron aralioides HOM05D002914 ORTHO05D003196 7.3e-20 100.9 129 50.4
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 9.5e-20 100.5 125 49.6
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 9.5e-20 100.5 83 55.4
Glyma.07G210000 Glycine max HOM05D002914 ORTHO05D003196 9.5e-20 100.5 86 61.6
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 1.2e-19 100.1 132 47.0
QL02p006168 Quercus lobata HOM05D002914 ORTHO05D003196 1.2e-19 100.1 128 43.8
CDE02G0277 Ceratophyllum demersum HOM05D002914 ORTHO05D003196 1.6e-19 99.8 129 47.3
Lj1g0002449 Lotus japonicus HOM05D002914 ORTHO05D003196 2.8e-19 99.0 112 51.8
Oeu003691.1 Olea europaea HOM05D002914 ORTHO05D003196 3.6e-19 98.6 103 52.4
Potri.014G035400 Populus trichocarpa HOM05D002914 ORTHO05D003196 3.6e-19 98.6 98 51.0
SGA_v2.0_scaffold58G20610 Striga asiatica HOM05D002914 ORTHO05D003196 3.6e-19 98.6 84 57.1
FvH4_2g35030 Fragaria vesca HOM05D002914 ORTHO05D003196 6.2e-19 97.8 105 52.4
PGR083G2546 Punica granatum HOM05D002914 ORTHO05D003196 6.2e-19 97.8 115 51.3
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 1.1e-18 97.1 83 57.8
FAN15G3578 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.1e-18 97.1 134 45.5
Nitab4.5_0000876g0190 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.1e-18 97.1 106 46.2
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 1.8e-18 96.3 124 44.4
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 2.3e-18 95.9 147 40.8
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 2.3e-18 95.9 116 44.8
Cfa005429 Carpinus fangiana HOM05D002914 ORTHO05D003196 4.0e-18 95.1 116 51.7
FAN20G2785 Fragaria x ananassa HOM05D002914 ORTHO05D003196 4.0e-18 95.1 134 44.8
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 8.9e-18 94.0 118 47.5
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 1.2e-17 93.6 128 42.2
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 1.2e-17 93.6 84 54.8
VMungo0251G3532 Vigna mungo HOM05D002914 ORTHO05D003196 1.2e-17 93.6 127 49.6
Peaxi162Scf00016g00161 Petunia axillaris HOM05D002914 ORTHO05D003196 1.5e-17 93.2 68 67.6
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 2.0e-17 92.8 84 54.8
CDE01G0545 Ceratophyllum demersum HOM05D000767 ORTHO05D003196 2.6e-17 92.4 130 44.6
FAN27G2590 Fragaria x ananassa HOM05D002914 ORTHO05D003196 2.6e-17 92.4 134 44.0
Nitab4.5_0002462g0040 Nicotiana tabacum HOM05D002914 ORTHO05D003196 3.4e-17 92.0 93 59.1
Eucgr.I01175 Eucalyptus grandis HOM05D002914 ORTHO05D003196 4.4e-17 91.7 94 53.2
HanXRQChr16g0509571 Helianthus annuus HOM05D002914 ORTHO05D003196 5.8e-17 91.3 113 45.1
RcHm_v2.0_Chr6g0306971 Rosa chinensis HOM05D002914 ORTHO05D003196 5.8e-17 91.3 102 54.9
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 9.8e-17 90.5 119 46.2
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 1.7e-16 89.7 115 45.2
Manes.05G170100 Manihot esculenta HOM05D002914 ORTHO05D003196 1.7e-16 89.7 120 50.8
TAR376G1047 Trochodendron aralioides HOM05D002914 ORTHO05D003196 1.7e-16 89.7 131 42.7
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 2.2e-16 89.4 102 45.1
Gohir.A03G191200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 3.7e-16 88.6 121 47.1
HanXRQChr04g0128331 Helianthus annuus HOM05D002914 ORTHO05D003196 3.7e-16 88.6 73 56.2
Lalb_Chr09g0328151 Lupinus albus HOM05D002914 ORTHO05D003196 6.4e-16 87.8 79 55.7
Thecc.02G096100 Theobroma cacao HOM05D002914 ORTHO05D003196 6.4e-16 87.8 117 46.2
AL4G19370 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 8.3e-16 87.4 137 38.7
Ciclev10002811m.g Citrus clementina HOM05D002914 ORTHO05D003196 8.3e-16 87.4 86 55.8
Nn1g05872 Nelumbo nucifera HOM05D002914 ORTHO05D003196 1.1e-15 87.0 125 46.4
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 1.4e-15 86.7 103 45.6
Carub.0004s0669 Capsella rubella HOM05D002914 ORTHO05D003196 1.9e-15 86.3 131 38.2
CiPaw.05G054900 Carya illinoinensis HOM05D002914 ORTHO05D003196 3.2e-15 85.5 115 47.8
Sc15g0006440 Simmondsia chinensis HOM05D002914 ORTHO05D003196 3.2e-15 85.5 105 41.9
THA.LOC104803788 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 3.2e-15 85.5 83 45.8
Oeu003693.1 Olea europaea HOM05D002914 ORTHO05D003196 4.1e-15 85.1 111 45.0
Oeu010582.1 Olea europaea HOM05D002914 ORTHO05D003196 4.1e-15 85.1 111 45.0
Potri.004G144400 Populus trichocarpa HOM05D002914 ORTHO05D003196 4.1e-15 85.1 134 41.0
Gorai.005G240100 Gossypium raimondii HOM05D002914 ORTHO05D003196 5.4e-15 84.7 121 47.9
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 7.0e-15 84.3 129 40.3
AT2G26520 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 9.2e-15 84.0 140 36.4
FAN20G0574 Fragaria x ananassa HOM05D002914 ORTHO05D003196 9.2e-15 84.0 119 47.1
Oeu013680.1 Olea europaea HOM05D002914 ORTHO05D003196 9.2e-15 84.0 128 43.0
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 1.2e-14 83.6 129 41.9
FvH4_2g06840 Fragaria vesca HOM05D002914 ORTHO05D003196 1.6e-14 83.2 119 46.2
FAN24G0092 Fragaria x ananassa HOM05D002914 ORTHO05D003196 2.1e-14 82.8 120 45.8
Aa31LG5G9350 Aethionema arabicum HOM05D002914 ORTHO05D003196 2.7e-14 82.4 125 40.8
Gohir.D13G036200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 3.5e-14 82.0 117 45.3
Nn5g30169 Nelumbo nucifera HOM05D002914 ORTHO05D003196 3.5e-14 82.0 86 51.2
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 3.5e-14 82.0 104 44.2
Gohir.A06G015600 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.6e-14 81.6 62 59.7
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.6e-14 81.6 62 59.7
Gorai.010G016300 Gossypium raimondii HOM05D002914 ORTHO05D003196 4.6e-14 81.6 62 59.7
arahy.Tifrunner.gnm1.ann1.ZME7HS Arachis hypogaea HOM05D002914 ORTHO05D003196 6.0e-14 81.3 101 48.5
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 6.0e-14 81.3 117 41.0
Sed0010504 Sechium edule HOM05D002914 ORTHO05D003196 7.8e-14 80.9 114 42.1
arahy.Tifrunner.gnm1.ann1.2E3RSG Arachis hypogaea HOM05D002914 ORTHO05D003196 1.0e-13 80.5 135 40.7
FAN15G1103 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.0e-13 80.5 119 45.4
Lj5P206T48 Lonicera japonica HOM05D002914 ORTHO05D003196 1.0e-13 80.5 118 44.9
EL10Ac9g21822 Beta vulgaris HOM05D002914 ORTHO05D003196 1.3e-13 80.1 82 50.0
Cpa.g.sc376.2 Carica papaya HOM05D002914 ORTHO05D003196 1.3e-13 80.1 74 58.1
Gohir.D02G212150 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.3e-13 80.1 122 45.9
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 1.3e-13 80.1 124 37.9
HPP92_003444 Vanilla planifolia HOM05D002914 ORTHO05D003196 1.7e-13 79.7 87 48.3
Gohir.A13G037800 Gossypium hirsutum HOM05D002914 ORTHO05D003196 3.0e-13 79.0 117 44.4
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 3.0e-13 79.0 91 45.1
Phvul.003G294100 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 3.0e-13 79.0 126 44.4
Potri.009G106300 Populus trichocarpa HOM05D002914 ORTHO05D003196 3.0e-13 79.0 102 45.1
Ca_18662_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 3.9e-13 78.6 106 44.3
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 3.9e-13 78.6 82 47.6
Glyma.02G134900 Glycine max HOM05D002914 ORTHO05D003196 3.9e-13 78.6 83 54.2
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 8.6e-13 77.4 91 45.1
SalBow6G6648 Salvia bowleyana HOM05D002914 ORTHO05D003196 8.6e-13 77.4 86 45.3
CiPaw.06G141400 Carya illinoinensis HOM05D002914 ORTHO05D003196 1.1e-12 77.0 120 45.8
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 1.1e-12 77.0 113 38.9
Sabra09G0081200 Salix brachista HOM05D002914 ORTHO05D003196 1.1e-12 77.0 122 43.4
Gorai.013G040900 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.9e-12 76.3 87 49.4
Ah.01g020080 Amaranthus hybridus HOM05D002914 ORTHO05D003196 3.3e-12 75.5 79 58.2
Sc08g0000120 Simmondsia chinensis HOM05D002914 ORTHO05D003196 5.6e-12 74.7 91 51.6
ATR0225G004 Amborella trichopoda HOM05D002914 ORTHO05D003196 7.3e-12 74.3 129 38.8
COL.COLO4_26446 Corchorus olitorius HOM05D002914 ORTHO05D003196 9.5e-12 73.9 124 43.5
PGR142G0527 Punica granatum HOM05D002914 ORTHO05D003196 9.5e-12 73.9 70 54.3
COL.COLO4_11718 Corchorus olitorius HOM05D002914 ORTHO05D003196 1.2e-11 73.6 89 48.3
Aqoxy6G00878 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 1.6e-11 73.2 87 47.1
Sabra04G0095900 Salix brachista HOM05D002914 ORTHO05D003196 2.1e-11 72.8 118 43.2
Ah.05g168910 Amaranthus hybridus HOM05D002914 ORTHO05D003196 2.8e-11 72.4 61 54.1
Cpa.g.sc62.45 Carica papaya HOM05D002914 ORTHO05D003196 2.8e-11 72.4 124 39.5
Prupe.8G116500 Prunus persica HOM05D002914 ORTHO05D003196 2.8e-11 72.4 81 51.9
HPP92_007074 Vanilla planifolia HOM05D002914 ORTHO05D003196 6.2e-11 71.2 82 43.9
Lalb_Chr05g0219001 Lupinus albus HOM05D002914 ORTHO05D003196 1.1e-10 70.5 128 39.8
QL11p038331 Quercus lobata HOM05D002914 ORTHO05D003196 1.1e-10 70.5 72 48.6
Oeu007255.1 Olea europaea HOM05D002914 ORTHO05D003196 1.8e-10 69.7 82 43.9
Psat7g121600 Pisum sativum HOM05D002914 ORTHO05D003196 5.2e-10 68.2 85 45.9
PSO170G6047 Papaver somniferum HOM05D002914 ORTHO05D003196 8.9e-10 67.4 44 63.6
CSS0030933 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 2.0e-09 66.2 43 60.5
CSS0032479 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 2.0e-09 66.2 43 60.5
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 2.6e-09 65.9 55 52.7
Manes.15G143200 Manihot esculenta HOM05D002914 ORTHO05D003196 3.4e-09 65.5 84 41.7
CSS0043526 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.7e-08 63.2 89 40.4
MBI12_g22911_MAGBIO Magnolia biondii HOM05D002914 ORTHO05D003196 6.4e-08 61.2 67 49.3
Peaxi162Scf00003g01911 Petunia axillaris HOM05D002914 ORTHO05D003196 8.3e-08 60.8 118 36.4
unitig_699.g19875 Utricularia gibba HOM05D002914 ORTHO05D003196 8.3e-08 60.8 94 39.4
ATR0730G198 Amborella trichopoda HOM05D007960 ORTHO05D010026 3.2e-07 58.9 80 38.8
Lj4g0007898 Lotus japonicus HOM05D002914 ORTHO05D003196 3.2e-07 58.9 71 49.3
Phvul.001G135000 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 1.2e-06 57.0 92 33.7
Prupe.7G063700 Prunus persica HOM05D002914 ORTHO05D003196 1.2e-06 57.0 69 40.6
MBI09_g45687_MAGBIO Magnolia biondii HOM05D002914 ORTHO05D003196 1.6e-06 56.6 60 53.3
CSS0032433 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 2.1e-06 56.2 82 35.4
Potri.006G052500 Populus trichocarpa HOM05D002914 ORTHO05D003196 2.7e-06 55.8 72 36.1
SGA_v2.0_scaffold105G30420 Striga asiatica HOM05D002914 ORTHO05D003196 2.7e-06 55.8 69 37.7
unitig_22.g6856 Utricularia gibba HOM05D002914 ORTHO05D003196 4.6e-06 55.1 96 43.8


User provided reference genes

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