Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G028180 Cucumis sativus L. HOM05D006792 ORTHO05D008489 1.4e-116 422.9 203 100.0
MELO3C010894.2 Cucumis melo HOM05D006792 ORTHO05D008489 7.2e-110 400.6 203 93.6
ClCG08G015590 Citrullus lanatus HOM05D006792 ORTHO05D008489 1.4e-100 369.8 204 85.8
Sed0017537 Sechium edule HOM05D006792 ORTHO05D008489 3.3e-94 348.6 206 82.0
Dinv35992 Davidia involucrata HOM05D006792 ORTHO05D008489 4.3e-78 295.0 201 69.2
Haze_17574 Corylus avellana HOM05D006792 ORTHO05D008489 4.7e-77 291.6 202 68.8
CiPaw.15G064100 Carya illinoinensis HOM05D006792 ORTHO05D008489 3.1e-76 288.9 199 69.3
TAR381G0050 Trochodendron aralioides HOM05D006792 ORTHO05D008489 2.2e-74 282.7 202 66.3
CSS0036679 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 3.7e-74 282.0 206 67.0
CSS0036769 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 8.3e-74 280.8 206 67.0
Lj4A777T61 Lonicera japonica HOM05D006792 ORTHO05D008489 9.2e-73 277.3 201 68.7
FvH4_2g40760 Fragaria vesca HOM05D006792 ORTHO05D008489 1.6e-72 276.6 203 66.0
FAN15G1697 Fragaria x ananassa HOM05D006792 ORTHO05D008489 1.6e-72 276.6 202 66.8
CANSAT56G4245 Cannabis sativa HOM05D006792 ORTHO05D008489 4.6e-72 275.0 193 71.5
Prupe.1G390300 Prunus persica HOM05D006792 ORTHO05D008489 4.6e-72 275.0 203 66.5
Cpa.g.sc376.3 Carica papaya HOM05D006792 ORTHO05D008489 6.0e-72 274.6 202 65.3
Cfa018502 Carpinus fangiana HOM05D006792 ORTHO05D008489 6.0e-72 274.6 201 65.7
TAR625G1025 Trochodendron aralioides HOM05D006792 ORTHO05D008489 1.0e-71 273.9 204 65.2
MD15G1036100 Malus domestica HOM05D006792 ORTHO05D008489 1.3e-71 273.5 197 65.5
Thecc.08G014600 Theobroma cacao HOM05D006792 ORTHO05D008489 1.7e-71 273.1 206 65.5
Actinidia15267 Actinidia chinensis HOM05D006792 ORTHO05D008489 5.1e-71 271.6 202 64.4
FAN27G1218 Fragaria x ananassa HOM05D006792 ORTHO05D008489 5.1e-71 271.6 202 65.8
QL02p006151 Quercus lobata HOM05D006792 ORTHO05D008489 6.6e-71 271.2 205 64.9
Potri.014G035300 Populus trichocarpa HOM05D006792 ORTHO05D008489 1.5e-70 270.0 204 63.2
Duzib041G0477 Durio zibethinus HOM05D006792 ORTHO05D008489 1.9e-70 269.6 202 65.8
RcHm_v2.0_Chr6g0299831 Rosa chinensis HOM05D006792 ORTHO05D008489 3.3e-70 268.9 203 65.0
GSVIVG01009569001 Vitis vinifera HOM05D006792 ORTHO05D008489 4.3e-70 268.5 201 64.7
Lalb_Chr06g0172721 Lupinus albus HOM05D006792 ORTHO05D008489 2.1e-69 266.2 209 63.6
Nn5g30170 Nelumbo nucifera HOM05D006792 ORTHO05D008489 2.1e-69 266.2 206 63.1
TWI36G0635 Tripterygium wilfordii HOM05D006792 ORTHO05D008489 2.1e-69 266.2 208 65.9
Aqoxy5G01393 Aquilegia oxysepala HOM05D006792 ORTHO05D008489 3.6e-69 265.4 215 62.3
Ciclev10002498m.g Citrus clementina HOM05D006792 ORTHO05D008489 4.7e-69 265.0 204 63.2
Atru.chr13.615 Acer truncatum HOM05D006792 ORTHO05D008489 1.8e-68 263.1 202 64.9
CAN.G1110.13 Capsicum annuum HOM05D006792 ORTHO05D008489 2.3e-68 262.7 202 61.9
Manes.10G083100 Manihot esculenta HOM05D006792 ORTHO05D008489 2.3e-68 262.7 202 64.4
Cc10_g03850 Coffea canephora HOM05D006792 ORTHO05D008489 5.2e-68 261.5 206 64.1
Eucgr.L00645 Eucalyptus grandis HOM05D006792 ORTHO05D008489 1.2e-67 260.4 205 66.8
Solyc10g006520.3 Solanum lycopersicum HOM05D006792 ORTHO05D008489 1.2e-67 260.4 202 62.4
Sopen10g002470 Solanum pennellii HOM05D006792 ORTHO05D008489 1.2e-67 260.4 202 62.4
Nitab4.5_0000074g0180 Nicotiana tabacum HOM05D006792 ORTHO05D008489 2.0e-67 259.6 204 62.7
Nitab4.5_0009129g0010 Nicotiana tabacum HOM05D006792 ORTHO05D008489 2.6e-67 259.2 202 62.9
PGSC0003DMG400014433 Solanum tuberosum HOM05D006792 ORTHO05D008489 2.6e-67 259.2 203 62.6
Rhsim06G0045800 Rhododendron simsii HOM05D006792 ORTHO05D008489 7.6e-67 257.7 205 62.9
Gohir.A06G015700 Gossypium hirsutum HOM05D006792 ORTHO05D008489 1.3e-66 256.9 208 63.0
Gohir.D06G013900 Gossypium hirsutum HOM05D006792 ORTHO05D008489 1.7e-66 256.5 202 62.9
Hund23634 Selenicereus undatus HOM05D006792 ORTHO05D008489 1.7e-66 256.5 217 60.4
vmacro21565 Vaccinium macrocarpon HOM05D006792 ORTHO05D008489 3.7e-66 255.4 209 61.7
PSO170G4587 Papaver somniferum HOM05D006792 ORTHO05D008489 1.4e-65 253.4 208 61.5
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 1.2e-64 250.4 202 61.9
Sabra14G0025200 Salix brachista HOM05D006792 ORTHO05D008489 4.6e-64 248.4 194 61.3
AUR62016018 Chenopodium quinoa HOM05D006792 ORTHO05D008489 6.0e-64 248.1 221 57.5
PGR031G1590 Punica granatum HOM05D006792 ORTHO05D008489 1.0e-63 247.3 203 61.1
SGA_v2.0_scaffold217G42431 Striga asiatica HOM05D006792 ORTHO05D008489 2.3e-63 246.1 210 58.6
AUR62021223 Chenopodium quinoa HOM05D006792 ORTHO05D008489 3.0e-63 245.7 221 57.5
Migut.C00611 Erythranthe guttata HOM05D006792 ORTHO05D008489 3.0e-63 245.7 205 62.4
PGR031G1503 Punica granatum HOM05D006792 ORTHO05D008489 3.0e-63 245.7 203 61.1
Peaxi162Scf00324g00610 Petunia axillaris HOM05D006792 ORTHO05D008489 5.1e-63 245.0 201 58.7
TPR.G28895 Trifolium pratense HOM05D006792 ORTHO05D008489 8.6e-63 244.2 212 57.5
CDE07G1453 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 1.1e-62 243.8 192 62.5
SGA_v2.0_scaffold127G34009 Striga asiatica HOM05D006792 ORTHO05D008489 1.5e-62 243.4 210 60.0
Lj5g0003340 Lotus japonicus HOM05D006792 ORTHO05D008489 2.5e-62 242.7 207 60.4
THA.LOC104803789 Tarenaya hassleriana HOM05D006792 ORTHO05D008489 7.3e-62 241.1 202 57.9
Carub.0006s0531 Capsella rubella HOM05D006792 ORTHO05D008489 9.6e-62 240.7 200 59.5
A10p29960 Brassica napus HOM05D006792 ORTHO05D008489 1.6e-61 240.0 198 59.1
Carub.0006s0578 Capsella rubella HOM05D006792 ORTHO05D008489 2.8e-61 239.2 200 59.0
EL10Ac3g05711 Beta vulgaris HOM05D006792 ORTHO05D008489 3.6e-61 238.8 215 56.7
BraA10t45035Z Brassica rapa HOM05D006792 ORTHO05D008489 3.6e-61 238.8 198 58.6
Lsat_1_v5_gn_4_124401 Lactuca sativa HOM05D006792 ORTHO05D008489 3.6e-61 238.8 198 60.1
AL6G16990 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 1.4e-60 236.9 200 59.0
Ah.07g209080 Amaranthus hybridus HOM05D006792 ORTHO05D008489 2.4e-60 236.1 201 58.2
Sc02g0006830 Simmondsia chinensis HOM05D006792 ORTHO05D008489 5.2e-60 235.0 203 57.6
BolC9t59782H Brassica oleracea HOM05D006792 ORTHO05D008489 6.8e-60 234.6 199 57.8
Thhalv10014748m.g Eutrema salsugineum HOM05D006792 ORTHO05D008489 6.8e-60 234.6 200 60.0
Sp6g36430 Schrenkiella parvula HOM05D006792 ORTHO05D008489 1.2e-59 233.8 196 59.7
AL6G16520 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 1.5e-59 233.4 200 58.0
Psat6g128400 Pisum sativum HOM05D006792 ORTHO05D008489 1.5e-59 233.4 212 58.0
BcaC06g32375 Brassica carinata HOM05D006792 ORTHO05D008489 5.8e-59 231.5 199 56.8
C09p70370 Brassica napus HOM05D006792 ORTHO05D008489 5.8e-59 231.5 199 56.8
Glyma.20G204600 Glycine max HOM05D006792 ORTHO05D008489 5.8e-59 231.5 203 58.1
HanXRQChr09g0268121 Helianthus annuus HOM05D006792 ORTHO05D008489 5.8e-59 231.5 195 56.9
Medtr1g075100 Medicago truncatula HOM05D006792 ORTHO05D008489 5.8e-59 231.5 201 59.7
AT5G06430 Arabidopsis thaliana HOM05D006792 ORTHO05D008489 7.6e-59 231.1 201 57.7
SalBow1G1949 Salvia bowleyana HOM05D006792 ORTHO05D008489 7.6e-59 231.1 202 57.9
SalBow6G5080 Salvia bowleyana HOM05D006792 ORTHO05D008489 2.2e-58 229.6 201 57.2
Duzib093G1402 Durio zibethinus HOM05D006792 ORTHO05D008489 4.9e-58 228.4 185 61.6
BcaC06g32576 Brassica carinata HOM05D006792 ORTHO05D008489 6.4e-58 228.0 195 57.9
DCAR_008785 Daucus carota HOM05D006792 ORTHO05D008489 8.4e-58 227.6 208 54.8
Phvul.L001959 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 8.4e-58 227.6 197 58.9
arahy.Tifrunner.gnm1.ann1.LDJ6K5 Arachis hypogaea HOM05D006792 ORTHO05D008489 2.4e-57 226.1 205 55.6
arahy.Tifrunner.gnm1.ann1.LP5K48 Arachis hypogaea HOM05D006792 ORTHO05D008489 3.2e-57 225.7 205 55.1
HPP92_009608 Vanilla planifolia HOM05D006792 ORTHO05D008489 5.4e-57 224.9 203 56.7
COL.COLO4_26447 Corchorus olitorius HOM05D006792 ORTHO05D008489 1.9e-54 216.5 168 65.5
ECA232G0465 Erigeron canadensis HOM05D006792 ORTHO05D008489 2.8e-53 212.6 197 55.8
unitig_19.g30007 Utricularia gibba HOM05D006792 ORTHO05D008489 2.8e-53 212.6 207 52.7
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 3.1e-52 209.1 172 61.6
VMungo0720G1195 Vigna mungo HOM05D006792 ORTHO05D008489 1.2e-51 207.2 221 52.5
CARHR285910 Cardamine hirsuta HOM05D006792 ORTHO05D008489 9.9e-51 204.1 177 58.8
ATR0225G026 Amborella trichopoda HOM05D006792 ORTHO05D008489 2.2e-50 203.0 187 56.1
Oeu040900.1 Olea europaea HOM05D006792 ORTHO05D008489 2.1e-45 186.4 154 59.1
CDE04G1657 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 6.2e-45 184.9 159 59.1
Os11g0592900 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 5.3e-44 181.8 203 47.8
MSTRG.1327 Avicennia marina HOM05D006792 ORTHO05D008489 3.4e-43 179.1 155 56.8
Glyma.09G029200 Glycine max HOM05D006792 ORTHO05D008489 3.4e-43 179.1 174 54.6
Gorai.010G016600 Gossypium raimondii HOM05D006792 ORTHO05D008489 1.9e-41 173.3 154 57.8
unitig_8.g5015 Utricularia gibba HOM05D006792 ORTHO05D008489 1.8e-39 166.8 207 44.9
SMO184G0001 Selaginella moellendorffii HOM05D006792 ORTHO05D008489 2.3e-39 166.4 117 66.7
Zm00001eb167650 Zea mays HOM05D006792 ORTHO05D008489 5.1e-39 165.2 241 41.1
Mapoly0072s0021 Marchantia polymorpha HOM05D006792 ORTHO05D008489 6.7e-39 164.9 229 38.9
Pp3c14_7090 Physcomitrium patens HOM05D006792 ORTHO05D008489 3.3e-38 162.5 197 45.7
Phvul.008G161700 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 4.0e-36 155.6 120 65.8
Eucgr.E03397 Eucalyptus grandis HOM05D006792 ORTHO05D008489 2.5e-33 146.4 155 51.6
CBR_g61518 Chara braunii HOM05D006792 ORTHO05D008489 5.5e-25 118.6 110 50.0
QL03p014147 Quercus lobata HOM05D006792 ORTHO05D008489 2.7e-24 116.3 135 49.6
CARHR206180 Cardamine hirsuta HOM05D006792 ORTHO05D008489 4.3e-22 109.0 124 46.0
Phvul.004G112200 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 1.4e-20 104.0 125 48.0
Rhsim06G0045400 Rhododendron simsii HOM05D000500 ORTHO05D000367 3.4e-19 99.4 64 75.0
Rhsim06G0045200 Rhododendron simsii HOM05D000500 ORTHO05D000367 7.4e-14 81.6 58 70.7
MD08G1060400 Malus domestica HOM05D006792 ORTHO05D008489 3.1e-12 76.3 51 68.6
Os11g0597500 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 4.1e-12 75.9 149 36.2
Cre14.g615250 Chlamydomonas reinhardtii HOM05D006792 ORTHO05D008489 1.2e-08 64.3 104 37.5
Os11g0597601 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 8.8e-07 58.2 68 44.1
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 1.5e-06 57.4 86 34.9
Pp3c22_350 Physcomitrium patens HOM05D005776 ORTHO05D007333 2.0e-06 57.0 73 37.0


User provided reference genes

Program Settings