Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 1.4e-168 596.3 312 100.0
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 5.6e-162 574.3 313 93.9
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 6.6e-155 550.8 312 91.0
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 1.6e-137 493.0 310 83.9
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 6.5e-110 401.4 305 69.8
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 4.2e-109 398.7 306 68.6
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 7.9e-108 394.4 302 69.2
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 1.8e-107 393.3 304 67.1
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 1.8e-107 393.3 304 67.1
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 2.3e-107 392.9 306 66.7
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 3.0e-107 392.5 250 78.0
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 6.7e-107 391.3 311 69.1
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 1.3e-105 387.1 302 68.5
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 1.7e-105 386.7 302 66.9
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 1.7e-105 386.7 298 66.8
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 1.1e-104 384.0 306 66.7
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 1.8e-104 383.3 306 65.7
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 3.1e-104 382.5 303 68.3
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 1.2e-103 380.6 302 69.2
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 1.2e-103 380.6 302 68.5
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 2.0e-103 379.8 302 68.2
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 3.5e-103 379.0 294 68.0
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 4.5e-103 378.6 300 67.0
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 5.9e-103 378.3 302 68.2
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 1.3e-102 377.1 306 67.3
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 2.9e-102 375.9 302 65.9
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 4.2e-101 372.1 303 65.3
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 1.2e-100 370.5 277 71.1
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 2.1e-100 369.8 300 66.3
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 2.7e-100 369.4 250 73.6
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 3.6e-100 369.0 304 65.5
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 6.1e-100 368.2 301 66.1
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 8.0e-100 367.9 310 63.9
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 1.4e-99 367.1 302 64.2
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 1.8e-99 366.7 311 63.3
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 2.0e-98 363.2 247 74.9
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 3.3e-98 362.5 250 71.2
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 4.4e-98 362.1 283 66.4
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 5.7e-98 361.7 305 63.0
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 7.5e-98 361.3 302 66.9
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 7.5e-98 361.3 292 65.1
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 7.5e-98 361.3 291 66.7
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 9.7e-98 360.9 337 58.8
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 9.7e-98 360.9 260 70.8
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 3.7e-97 359.0 310 63.2
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 3.7e-97 359.0 300 62.7
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 4.8e-97 358.6 231 76.2
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 4.8e-97 358.6 274 67.9
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 8.2e-97 357.8 292 64.4
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 1.4e-96 357.1 250 70.8
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 2.4e-96 356.3 308 61.0
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 3.1e-96 355.9 311 63.3
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 4.1e-96 355.5 243 72.4
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 3.5e-95 352.4 253 68.8
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 5.9e-95 351.7 292 65.4
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 1.0e-94 350.9 307 59.9
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 2.2e-94 349.7 252 68.7
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 2.9e-94 349.4 298 64.4
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 3.8e-94 349.0 302 59.6
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 3.8e-94 349.0 309 59.2
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 8.5e-94 347.8 285 61.1
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 4.2e-93 345.5 271 64.9
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 2.1e-92 343.2 244 70.5
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 3.6e-92 342.4 281 63.3
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 3.6e-92 342.4 248 68.1
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 4.7e-92 342.0 297 64.3
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 6.1e-92 341.7 236 73.3
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 1.8e-91 340.1 250 66.4
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 2.3e-91 339.7 294 61.2
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 6.8e-91 338.2 250 67.2
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 1.5e-90 337.0 248 66.5
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 3.4e-90 335.9 261 64.4
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 3.4e-90 335.9 225 72.0
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 4.4e-90 335.5 250 65.6
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 5.7e-90 335.1 245 68.6
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 7.5e-90 334.7 228 72.8
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 2.8e-89 332.8 275 65.1
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 3.7e-89 332.4 252 66.7
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 6.3e-89 331.6 252 65.1
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 1.8e-88 330.1 287 60.3
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 2.4e-88 329.7 293 58.4
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 2.4e-88 329.7 252 64.7
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 4.1e-88 328.9 252 64.7
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 1.6e-87 327.0 249 65.1
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 2.0e-87 326.6 257 63.8
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 4.5e-87 325.5 244 66.8
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 1.0e-86 324.3 338 51.8
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 1.0e-86 324.3 354 51.7
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 2.9e-86 322.8 245 63.7
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 1.6e-84 317.0 255 62.4
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 1.6e-84 317.0 420 45.5
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 4.4e-82 308.9 304 56.9
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 7.5e-82 308.1 225 66.7
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 7.5e-82 308.1 381 49.9
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 5.0e-78 295.4 232 65.1
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 9.5e-77 291.2 249 57.0
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 8.0e-76 288.1 243 56.0
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 1.0e-75 287.7 253 59.7
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 6.8e-75 285.0 327 49.8
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 2.0e-74 283.5 213 67.6
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 4.9e-73 278.9 190 72.6
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 1.4e-72 277.3 187 72.2
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 1.6e-71 273.9 245 55.9
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 5.0e-70 268.9 251 57.0
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 7.3e-69 265.0 234 56.0
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 9.2e-64 248.1 300 52.7
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 1.2e-63 247.7 213 62.9
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 2.0e-63 246.9 196 62.8
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 3.5e-63 246.1 312 45.5
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 2.8e-60 236.5 233 51.5
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 4.0e-59 232.6 275 45.8
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 2.1e-55 220.3 248 47.6
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 7.3e-53 211.8 172 62.8
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 9.5e-53 211.5 204 56.4
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 3.1e-51 206.5 142 76.1
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 1.7e-49 200.7 246 45.5
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 3.9e-46 189.5 141 62.4
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 1.1e-45 188.0 251 43.0
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 4.6e-39 166.0 122 69.7
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 2.5e-37 160.2 198 46.0
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 2.5e-29 133.7 162 45.1
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 6.0e-23 112.5 79 60.8
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 2.9e-17 93.6 74 56.8


User provided reference genes

Program Settings