Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 2.7e-132 475.3 242 100.0
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 3.6e-124 448.4 242 94.6
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 2.3e-115 419.1 242 88.0
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 2.2e-97 359.4 242 75.2
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.3e-86 323.6 244 69.7
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 3.2e-80 302.4 244 64.8
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 3.2e-80 302.4 244 64.8
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 3.2e-80 302.4 246 64.2
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 3.0e-78 295.8 244 63.9
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 5.1e-78 295.0 249 63.5
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 4.3e-77 292.0 244 63.1
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 6.2e-76 288.1 245 61.2
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 1.4e-75 287.0 250 62.0
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 5.3e-75 285.0 250 61.2
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 4.5e-74 282.0 246 61.4
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 5.8e-74 281.6 244 62.3
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 1.3e-73 280.4 244 62.3
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 8.4e-73 277.7 246 59.8
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.4e-72 276.9 250 59.2
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 1.9e-72 276.6 244 60.2
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.4e-72 276.2 244 60.7
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 4.2e-72 275.4 248 58.5
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 5.4e-72 275.0 245 60.8
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 2.1e-71 273.1 246 60.6
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 2.7e-71 272.7 244 59.0
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 3.5e-71 272.3 245 60.4
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 3.5e-71 272.3 243 60.9
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 7.9e-71 271.2 244 58.6
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 1.3e-70 270.4 242 59.9
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 1.3e-70 270.4 241 59.8
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.8e-70 270.0 244 58.6
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.3e-70 269.6 246 60.6
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 3.0e-70 269.2 244 57.4
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 3.0e-70 269.2 242 59.9
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 3.0e-70 269.2 247 59.5
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 3.0e-70 269.2 244 57.4
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 5.1e-70 268.5 241 61.8
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 5.1e-70 268.5 245 57.1
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.1e-69 267.3 249 59.0
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.1e-69 267.3 249 59.0
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 1.1e-69 267.3 242 58.3
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 1.5e-69 266.9 243 58.8
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 2.5e-69 266.2 244 58.2
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 3.3e-69 265.8 246 59.3
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 4.3e-69 265.4 252 59.9
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 7.4e-69 264.6 244 57.0
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 9.6e-69 264.2 247 58.3
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 1.6e-68 263.5 246 57.7
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.1e-68 263.1 245 57.1
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.8e-68 262.7 246 58.9
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 2.8e-68 262.7 242 58.3
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 8.1e-68 261.2 246 58.5
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 1.1e-67 260.8 249 58.2
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.4e-67 260.4 241 59.3
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.8e-67 260.0 249 57.8
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.4e-67 259.6 250 57.6
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 3.1e-67 259.2 246 58.1
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 3.1e-67 259.2 176 70.5
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 3.1e-67 259.2 186 69.4
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 3.1e-67 259.2 240 59.2
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 4.0e-67 258.8 163 77.3
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 4.0e-67 258.8 181 70.2
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 5.3e-67 258.5 240 57.1
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 5.3e-67 258.5 245 58.8
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 6.9e-67 258.1 250 56.8
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 9.0e-67 257.7 244 58.2
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 9.0e-67 257.7 242 58.3
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 2.0e-66 256.5 244 57.0
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 2.6e-66 256.1 245 58.0
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 3.4e-66 255.8 181 69.1
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 4.5e-66 255.4 242 58.7
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 5.8e-66 255.0 244 56.6
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 7.6e-66 254.6 259 56.8
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 7.6e-66 254.6 235 58.3
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 1.3e-65 253.8 244 56.1
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 2.9e-65 252.7 244 56.1
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 2.9e-65 252.7 244 56.1
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 2.9e-65 252.7 244 56.1
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 3.8e-65 252.3 254 52.8
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 4.9e-65 251.9 242 55.4
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 6.5e-65 251.5 244 57.0
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.1e-64 250.8 232 57.3
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.4e-64 250.4 242 55.4
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 1.4e-64 250.4 244 56.1
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.4e-64 250.4 244 54.9
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.4e-64 250.4 244 57.4
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.4e-64 250.4 244 57.4
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 3.2e-64 249.2 242 55.0
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.1e-64 248.1 185 67.0
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 7.1e-64 248.1 244 56.6
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 9.3e-64 247.7 244 56.6
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.2e-63 247.3 176 68.8
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 2.1e-63 246.5 215 59.1
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 3.5e-63 245.7 246 57.7
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 3.5e-63 245.7 246 57.7
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 4.6e-63 245.4 243 57.6
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 4.6e-63 245.4 252 52.8
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 6.0e-63 245.0 226 58.4
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 6.0e-63 245.0 245 56.7
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 1.0e-62 244.2 177 68.4
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 1.0e-62 244.2 262 54.6
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 1.3e-62 243.8 182 64.8
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 1.8e-62 243.4 243 56.4
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.3e-62 243.0 176 67.6
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 3.0e-62 242.7 262 53.8
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 3.0e-62 242.7 218 59.6
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 8.7e-62 241.1 245 54.7
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 8.7e-62 241.1 246 53.7
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 8.7e-62 241.1 242 54.5
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 9.6e-61 237.7 177 63.3
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.3e-60 237.3 150 76.7
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 1.6e-60 236.9 242 51.7
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 2.4e-59 233.0 234 53.0
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 1.5e-58 230.3 209 58.9
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 3.4e-58 229.2 244 52.0
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 3.4e-58 229.2 233 54.9
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.3e-57 227.3 244 52.0
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.7e-57 226.9 175 64.0
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.4e-56 223.8 177 61.0
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 1.4e-56 223.8 172 61.0
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 1.4e-56 223.8 172 59.9
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 1.9e-56 223.4 242 52.5
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 2.5e-56 223.0 158 67.1
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 3.2e-56 222.6 238 49.6
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 5.5e-56 221.9 172 59.9
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.9e-55 218.0 161 65.2
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 7.9e-55 218.0 244 49.6
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 7.9e-55 218.0 225 54.2
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.0e-54 217.6 147 72.1
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 1.0e-54 217.6 183 58.5
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 8.7e-54 214.5 182 57.1
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 1.5e-53 213.8 237 50.2
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 5.7e-53 211.8 224 50.9
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 2.8e-52 209.5 227 54.2
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.1e-51 207.6 238 51.3
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 5.3e-51 205.3 172 57.6
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 6.9e-51 204.9 183 55.2
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.0e-49 201.1 218 50.5
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 1.2e-47 194.1 165 62.4
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.6e-47 193.7 162 61.7
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.2e-44 181.4 132 65.2
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 1.5e-42 177.2 112 75.9
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.5e-40 168.7 147 61.2
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 7.4e-37 158.3 106 70.8
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 1.0e-33 147.9 172 43.6
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 1.3e-33 147.5 219 38.8
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 1.4e-30 137.5 162 44.4
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 2.3e-30 136.7 149 47.7
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 6.7e-30 135.2 178 38.8
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 2.7e-26 123.2 173 38.7
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.2e-24 115.2 74 73.0
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 9.1e-19 98.2 155 40.6
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 5.2e-14 82.4 86 48.8
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 2.4e-11 73.6 112 42.0
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 3.3e-08 63.2 86 34.9


User provided reference genes

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