Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G028070 Cucumis sativus L. HOM05D006157 ORTHO05D007826 6.6e-119 430.6 205 100.0
MELO3C010885.2 Cucumis melo HOM05D006157 ORTHO05D007826 3.1e-116 421.8 205 97.6
ClCG08G015710 Citrullus lanatus HOM05D006157 ORTHO05D007826 4.0e-100 368.2 191 92.1
Sed0015883 Sechium edule HOM05D006157 ORTHO05D007826 6.6e-95 350.9 206 81.6
Sed0006561 Sechium edule HOM05D006157 ORTHO05D007826 1.1e-92 343.6 205 78.0
TWI56G1258 Tripterygium wilfordii HOM05D006157 ORTHO05D007826 2.8e-61 239.2 209 56.0
Potri.002G127800 Populus trichocarpa HOM05D006157 ORTHO05D007826 2.6e-59 232.6 209 56.9
CiPaw.15G061800 Carya illinoinensis HOM05D006157 ORTHO05D007826 1.7e-58 229.9 209 56.5
Prupe.1G438800 Prunus persica HOM05D006157 ORTHO05D007826 1.9e-57 226.5 207 56.0
Gohir.D06G015100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 4.2e-57 225.3 212 53.3
Gorai.010G017900 Gossypium raimondii HOM05D006157 ORTHO05D007826 4.2e-57 225.3 212 53.3
Ciclev10002442m.g Citrus clementina HOM05D006157 ORTHO05D007826 2.7e-56 222.6 208 55.8
Gohir.A06G017000 Gossypium hirsutum HOM05D006157 ORTHO05D007826 2.7e-56 222.6 212 52.8
Duzib116G0710 Durio zibethinus HOM05D006157 ORTHO05D007826 1.0e-55 220.7 211 55.0
MD15G1085000 Malus domestica HOM05D006157 ORTHO05D007826 1.3e-55 220.3 207 56.5
Sabra14G0022700 Salix brachista HOM05D006157 ORTHO05D007826 2.3e-55 219.5 209 54.1
QL02p005407 Quercus lobata HOM05D006157 ORTHO05D007826 3.0e-55 219.2 206 53.9
Cfa018525 Carpinus fangiana HOM05D006157 ORTHO05D007826 3.9e-55 218.8 206 53.4
Haze_17545 Corylus avellana HOM05D006157 ORTHO05D007826 5.7e-54 214.9 207 52.7
Haze_17554 Corylus avellana HOM05D006157 ORTHO05D007826 5.7e-54 214.9 207 52.7
Atru.chr13.647 Acer truncatum HOM05D006157 ORTHO05D007826 8.2e-53 211.1 215 54.0
Potri.014G032300 Populus trichocarpa HOM05D006157 ORTHO05D007826 3.1e-52 209.1 209 52.6
FAN15G3536 Fragaria x ananassa HOM05D006157 ORTHO05D007826 5.3e-52 208.4 208 54.3
RcHm_v2.0_Chr6g0307431 Rosa chinensis HOM05D006157 ORTHO05D007826 2.6e-51 206.1 208 53.4
MD08G1103700 Malus domestica HOM05D006157 ORTHO05D007826 3.4e-51 205.7 208 51.4
CANSAT54G0006 Cannabis sativa HOM05D006157 ORTHO05D007826 5.9e-51 204.9 212 52.8
Manes.05G171900 Manihot esculenta HOM05D006157 ORTHO05D007826 1.0e-50 204.1 205 53.7
Manes.05G171901 Manihot esculenta HOM05D006157 ORTHO05D007826 1.0e-50 204.1 205 53.7
Ca_13302_v3 Cicer arietinum L. HOM05D006157 ORTHO05D007826 8.5e-50 201.1 201 51.7
Gorai.005G103500 Gossypium raimondii HOM05D006157 ORTHO05D007826 8.5e-50 201.1 208 50.0
Gohir.D02G092100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 1.9e-49 199.9 208 50.0
vmacro21540 Vaccinium macrocarpon HOM05D006157 ORTHO05D007826 7.2e-49 198.0 211 49.3
Actinidia23263 Actinidia chinensis HOM05D006157 ORTHO05D007826 1.6e-48 196.8 213 48.8
Gohir.A03G079324 Gossypium hirsutum HOM05D006157 ORTHO05D007826 2.1e-48 196.4 208 49.0
TPR.G13684 Trifolium pratense HOM05D006157 ORTHO05D007826 2.1e-48 196.4 203 52.7
Eucgr.F00242 Eucalyptus grandis HOM05D006157 ORTHO05D007826 2.7e-48 196.1 207 50.2
FAN20G0621 Fragaria x ananassa HOM05D006157 ORTHO05D007826 2.7e-48 196.1 209 52.2
FAN27G0611 Fragaria x ananassa HOM05D006157 ORTHO05D007826 7.9e-48 194.5 211 51.7
Medtr1g019800 Medicago truncatula HOM05D006157 ORTHO05D007826 1.8e-47 193.4 202 52.0
Hma1.2p1_0718F.1_g208450 Hydrangea macrophylla HOM05D006157 ORTHO05D007826 2.3e-47 193.0 203 52.7
Psat6g012720 Pisum sativum HOM05D006157 ORTHO05D007826 2.3e-47 193.0 202 51.0
Manes.18G032700 Manihot esculenta HOM05D006157 ORTHO05D007826 3.0e-47 192.6 206 51.0
Lj5g0002869 Lotus japonicus HOM05D006157 ORTHO05D007826 3.9e-47 192.2 209 48.3
PGR083G2028 Punica granatum HOM05D006157 ORTHO05D007826 6.7e-47 191.4 206 51.0
FvH4_2g34660 Fragaria vesca HOM05D006157 ORTHO05D007826 1.1e-46 190.7 201 53.2
GSVIVG01009525001 Vitis vinifera HOM05D006157 ORTHO05D007826 2.0e-46 189.9 208 48.1
Thecc.08G011200 Theobroma cacao HOM05D006157 ORTHO05D007826 9.7e-46 187.6 154 59.7
Peaxi162Scf00064g00125 Petunia axillaris HOM05D006157 ORTHO05D007826 1.3e-45 187.2 210 50.0
Dinv35975 Davidia involucrata HOM05D006157 ORTHO05D007826 2.8e-45 186.0 220 46.4
Lalb_Chr14g0368791 Lupinus albus HOM05D006157 ORTHO05D007826 6.9e-44 181.4 200 49.5
Cpa.g.c24415.4 Carica papaya HOM05D006157 ORTHO05D007826 2.0e-43 179.9 202 50.5
CSS0004131 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 3.4e-43 179.1 221 44.3
Nitab4.5_0004184g0060 Nicotiana tabacum HOM05D006157 ORTHO05D007890 1.0e-42 177.6 199 47.2
Glyma.06G038400 Glycine max HOM05D006157 ORTHO05D007826 3.8e-42 175.6 199 46.2
MSTRG.25101 Avicennia marina HOM05D006157 ORTHO05D007826 5.0e-42 175.3 207 44.9
Nitab4.5_0000453g0220 Nicotiana tabacum HOM05D006157 ORTHO05D007890 1.4e-41 173.7 204 46.1
Glyma.04G037500 Glycine max HOM05D006157 ORTHO05D007826 1.9e-41 173.3 206 45.6
Phvul.009G063700 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 1.9e-41 173.3 199 45.7
Nitab4.5_0000686g0050 Nicotiana tabacum HOM05D006157 ORTHO05D007826 2.5e-41 172.9 206 45.1
VMungo0647G0691 Vigna mungo HOM05D006157 ORTHO05D007826 5.5e-41 171.8 207 45.9
Lsat_1_v5_gn_4_124041 Lactuca sativa HOM05D006157 ORTHO05D007826 9.4e-41 171.0 213 46.5
VMungo1309G0335 Vigna mungo HOM05D006157 ORTHO05D007826 9.4e-41 171.0 202 43.6
Cc10_g04340 Coffea canephora HOM05D006157 ORTHO05D007826 1.6e-40 170.2 233 41.2
Phvul.001G020800 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 1.6e-40 170.2 207 46.4
Nitab4.5_0001101g0070 Nicotiana tabacum HOM05D006157 ORTHO05D007826 3.6e-40 169.1 206 43.2
EL10Ac1g01781 Beta vulgaris HOM05D006157 ORTHO05D007826 3.9e-39 165.6 232 43.5
Rhsim06G0048100 Rhododendron simsii HOM05D006157 ORTHO05D007826 9.7e-38 161.0 211 44.1
Peaxi162Scf00528g00414 Petunia axillaris HOM05D006157 ORTHO05D007826 6.3e-37 158.3 199 43.2
Glyma.17G243500 Glycine max HOM05D006157 ORTHO05D007826 3.1e-36 156.0 205 44.9
Glyma.14G081800 Glycine max HOM05D006157 ORTHO05D007826 5.3e-36 155.2 204 46.1
PGSC0003DMG400036180 Solanum tuberosum HOM05D006157 ORTHO05D007826 9.1e-36 154.5 206 39.8
TAR628G1181 Trochodendron aralioides HOM05D006157 ORTHO05D007826 3.5e-35 152.5 206 40.8
HanXRQChr09g0267931 Helianthus annuus HOM05D006157 ORTHO05D007826 4.5e-35 152.1 215 42.3
AUR62022432 Chenopodium quinoa HOM05D006157 ORTHO05D007826 5.9e-35 151.8 228 40.8
AUR62039307 Chenopodium quinoa HOM05D006157 ORTHO05D007826 1.3e-34 150.6 228 40.8
Nn5g30225 Nelumbo nucifera HOM05D006157 ORTHO05D007826 1.3e-34 150.6 205 41.5
Sopen04g032780 Solanum pennellii HOM05D006157 ORTHO05D007826 3.8e-34 149.1 209 41.1
SGA_v2.0_scaffold14G07032 Striga asiatica HOM05D006157 ORTHO05D007826 3.8e-34 149.1 215 41.9
Nn1g05836 Nelumbo nucifera HOM05D006157 ORTHO05D007826 5.0e-34 148.7 211 40.3
Ah.05g168840 Amaranthus hybridus HOM05D006157 ORTHO05D007826 8.5e-34 147.9 188 46.8
Lj4C53T12 Lonicera japonica HOM05D006157 ORTHO05D007826 4.2e-33 145.6 203 44.8
Sopen12g030790 Solanum pennellii HOM05D006157 ORTHO05D007826 4.2e-33 145.6 209 40.2
ECA232G2668 Erigeron canadensis HOM05D006157 ORTHO05D007826 1.2e-32 144.1 210 42.4
THA.LOC104806945 Tarenaya hassleriana HOM05D006157 ORTHO05D007826 1.6e-32 143.7 208 41.3
Solyc12g088890.3 Solanum lycopersicum HOM05D006157 ORTHO05D007890 1.5e-30 137.1 167 44.9
Solyc04g079170.4 Solanum lycopersicum HOM05D006157 ORTHO05D007826 7.5e-30 134.8 194 41.8
MBI02_g17343_MAGBIO Magnolia biondii HOM05D006157 ORTHO05D007826 1.7e-29 133.7 206 40.3
SalBow8G3379 Salvia bowleyana HOM05D006157 ORTHO05D007826 2.2e-29 133.3 207 43.0
PGSC0003DMG400015419 Solanum tuberosum HOM05D006157 ORTHO05D007826 4.8e-29 132.1 139 46.8
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 4.1e-28 129.0 150 50.0
BcaB07g33839 Brassica carinata HOM05D006157 ORTHO05D007826 7.0e-28 128.3 194 38.1
AL1G53700 Arabidopsis lyrata HOM05D006157 ORTHO05D007826 2.0e-27 126.7 193 38.9
Migut.C00597 Erythranthe guttata HOM05D006157 ORTHO05D007826 2.0e-27 126.7 203 40.4
COL.COLO4_26474 Corchorus olitorius HOM05D006157 ORTHO05D007826 3.5e-27 125.9 205 38.0
Thhalv10011797m.g Eutrema salsugineum HOM05D006157 ORTHO05D007826 4.5e-27 125.6 192 38.5
A10p06400 Brassica napus HOM05D006157 ORTHO05D007826 1.0e-26 124.4 194 37.1
Carub.0001s3622 Capsella rubella HOM05D006157 ORTHO05D007826 5.0e-26 122.1 195 38.5
Aqoxy6G01361 Aquilegia oxysepala HOM05D006157 ORTHO05D007826 6.5e-26 121.7 206 40.3
Migut.N02699 Erythranthe guttata HOM05D006157 ORTHO05D007826 6.5e-26 121.7 215 37.7
AUR62019555 Chenopodium quinoa HOM05D006157 ORTHO05D007826 1.5e-25 120.6 165 45.5
Sp1g34500 Schrenkiella parvula HOM05D006157 ORTHO05D007826 1.5e-25 120.6 190 34.7
SpUn0102_0020 Schrenkiella parvula HOM05D006157 ORTHO05D007826 1.5e-25 120.6 190 34.7
Aa31sc924G20 Aethionema arabicum HOM05D006157 ORTHO05D007826 3.2e-25 119.4 199 36.2
CARHR037020 Cardamine hirsuta HOM05D006157 ORTHO05D007826 4.2e-25 119.0 190 37.4
Sc02g0007020 Simmondsia chinensis HOM05D006157 ORTHO05D007826 4.2e-25 119.0 214 39.3
BolSC99t61279H Brassica oleracea HOM05D006157 ORTHO05D007826 5.5e-25 118.6 194 35.6
AT1G47410 Arabidopsis thaliana HOM05D006157 ORTHO05D007826 7.2e-25 118.2 169 40.2
C06p01910 Brassica napus HOM05D006157 ORTHO05D007826 1.6e-24 117.1 194 35.6
Actinidia22616 Actinidia chinensis HOM05D006157 ORTHO05D007826 2.7e-24 116.3 169 42.0
PSO541G3363 Papaver somniferum HOM05D006157 ORTHO05D007826 8.3e-21 104.8 226 33.2
Duzib093G2157 Durio zibethinus HOM05D006157 ORTHO05D007826 3.1e-20 102.8 113 49.6
BcaC08g42947 Brassica carinata HOM05D006157 ORTHO05D007826 7.7e-19 98.2 108 44.4
arahy.Tifrunner.gnm1.ann1.HUL940 Arachis hypogaea HOM05D006157 ORTHO05D007826 1.0e-18 97.8 216 36.1
arahy.Tifrunner.gnm1.ann1.R9H0NA Arachis hypogaea HOM05D006157 ORTHO05D007826 1.0e-18 97.8 216 36.1
PSO675G5393 Papaver somniferum HOM05D006157 ORTHO05D007826 3.6e-16 89.4 303 26.7
FvH4_2g34701 Fragaria vesca HOM05D006157 ORTHO05D007826 5.7e-14 82.0 113 42.5
ATR0100G006 Amborella trichopoda HOM05D006157 ORTHO05D007826 2.2e-13 80.1 152 34.2
ATR0100G061 Amborella trichopoda HOM05D006157 ORTHO05D007826 1.1e-12 77.8 154 34.4
unitig_22.g6773 Utricularia gibba HOM05D006157 ORTHO05D007826 1.4e-12 77.4 175 34.3
CSS0005922 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 1.3e-10 70.9 146 30.8
HPP92_027520 Vanilla planifolia HOM05D006157 ORTHO05D007826 1.7e-10 70.5 140 36.4
SalBow8G4867 Salvia bowleyana HOM05D006157 ORTHO05D007826 7.3e-09 65.1 33 78.8
Os09g0460100 Oryza sativa ssp. japonica HOM05D006157 ORTHO05D007826 9.5e-09 64.7 197 26.9
Zm00001eb315050 Zea mays HOM05D006157 ORTHO05D007826 1.0e-07 61.2 222 25.7


User provided reference genes

Program Settings