Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 4.7e-205 717.6 361 100.0
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 2.3e-199 698.7 361 96.7
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 1.5e-190 669.5 373 91.2
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 7.1e-185 650.6 361 89.8
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 1.6e-165 586.3 354 78.8
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 5.0e-162 574.7 362 76.5
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 6.5e-162 574.3 364 76.6
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 6.1e-160 567.8 362 76.0
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.8e-159 566.2 361 75.1
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 1.8e-159 566.2 361 76.7
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 1.1e-158 563.5 363 74.4
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 4.3e-158 561.6 362 74.6
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 2.2e-157 559.3 362 74.6
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 2.8e-157 558.9 361 76.2
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 2.8e-157 558.9 418 67.5
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 3.7e-157 558.5 363 74.9
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 4.8e-157 558.1 362 75.1
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.8e-157 558.1 363 74.4
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 6.3e-157 557.8 363 74.4
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 1.8e-156 556.2 364 72.8
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 3.1e-156 555.4 359 74.4
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 4.1e-156 555.1 365 75.1
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 1.3e-154 550.1 364 75.0
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.2e-154 549.3 363 73.3
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 3.2e-153 545.4 374 71.4
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 7.2e-153 544.3 360 73.6
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 1.2e-152 543.5 362 72.4
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 1.2e-152 543.5 362 72.7
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 2.7e-152 542.3 363 71.6
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 4.7e-152 541.6 361 73.1
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 4.7e-152 541.6 362 72.7
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 4.7e-152 541.6 359 73.0
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 6.1e-152 541.2 360 72.8
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 3.0e-151 538.9 360 71.1
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 3.0e-151 538.9 365 72.3
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 3.9e-151 538.5 362 71.8
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 3.9e-151 538.5 365 72.9
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 3.9e-151 538.5 362 72.7
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 5.1e-151 538.1 363 71.3
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 1.5e-150 536.6 369 69.1
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 2.0e-150 536.2 361 72.0
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 2.0e-150 536.2 362 71.8
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 9.7e-150 533.9 360 70.6
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 9.7e-150 533.9 362 70.7
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.3e-149 533.5 362 71.3
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 1.7e-149 533.1 366 72.7
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 1.7e-149 533.1 362 70.7
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 3.7e-149 531.9 362 70.2
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 4.8e-149 531.6 360 70.0
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 4.8e-149 531.6 369 69.1
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 1.8e-148 529.6 359 69.6
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 7.0e-148 527.7 369 69.1
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 1.2e-147 526.9 360 69.7
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 1.2e-147 526.9 360 69.4
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 1.6e-147 526.6 361 70.9
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 2.0e-147 526.2 361 70.6
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 2.6e-147 525.8 360 69.7
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 7.7e-147 524.2 360 68.9
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 7.7e-147 524.2 362 69.1
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 1.3e-146 523.5 359 69.1
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.3e-146 523.5 352 71.9
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.3e-146 523.5 352 71.9
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 1.3e-146 523.5 360 69.2
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 3.2e-145 518.8 393 65.9
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 1.6e-144 516.5 357 72.0
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 2.7e-144 515.8 360 68.1
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 2.7e-144 515.8 363 68.3
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 4.7e-144 515.0 358 69.6
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 8.0e-144 514.2 358 70.7
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 1.0e-143 513.8 349 71.6
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 1.8e-143 513.1 358 71.5
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 2.3e-143 512.7 363 68.6
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 5.2e-143 511.5 320 76.2
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 6.7e-143 511.1 360 68.9
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.5e-142 510.0 396 64.1
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 7.5e-142 507.7 352 70.5
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 9.7e-142 507.3 352 69.9
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 2.4e-140 502.7 361 69.0
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 3.1e-140 502.3 361 69.5
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 1.6e-139 500.0 359 65.2
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.5e-139 498.8 381 65.1
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 4.5e-139 498.4 355 67.9
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.2e-138 496.1 385 62.9
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.9e-138 495.7 385 62.9
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.8e-138 495.4 363 66.7
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 5.0e-138 495.0 385 62.9
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 2.5e-137 492.7 362 67.7
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 2.7e-136 489.2 397 62.7
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 4.4e-134 481.9 325 72.0
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 6.3e-133 478.0 316 72.2
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 5.4e-132 474.9 362 65.5
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 9.1e-132 474.2 362 64.4
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 2.0e-131 473.0 354 65.5
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 5.9e-131 471.5 360 64.7
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 5.9e-131 471.5 315 73.0
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 1.0e-130 470.7 374 65.5
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 6.5e-130 468.0 363 64.5
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 1.9e-129 466.5 363 64.2
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 1.9e-129 466.5 363 64.2
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 1.0e-127 460.7 298 76.2
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 4.0e-127 458.8 359 62.4
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 2.0e-126 456.4 300 74.0
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.7e-125 452.2 360 61.7
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.5e-121 440.3 354 62.7
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 7.3e-121 438.0 297 73.7
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 6.8e-119 431.4 297 70.7
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 5.7e-118 428.3 327 65.4
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 1.1e-116 424.1 291 69.8
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.0e-111 407.5 385 55.6
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 1.2e-107 394.0 360 56.1
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 1.9e-105 386.7 362 56.9
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 1.6e-104 383.6 360 53.3
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.6e-104 383.6 287 63.4
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.7e-104 382.1 284 65.1
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 1.3e-101 374.0 350 53.1
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 4.1e-100 369.0 361 54.3
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.7e-99 366.3 362 54.7
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 7.8e-99 364.8 354 56.5
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 6.2e-96 355.1 340 51.5
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.4e-95 354.0 269 67.3
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 4.0e-95 352.4 309 54.4
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 1.5e-94 350.5 335 50.7
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 6.4e-93 345.1 365 51.5
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 6.2e-64 248.8 154 76.0
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 5.5e-60 235.7 327 39.1
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.1e-52 211.5 137 72.3
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 9.7e-49 198.4 374 35.0
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 4.5e-38 162.9 128 64.8
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.7e-38 162.2 137 59.1
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 4.7e-35 152.9 333 33.0
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 6.7e-34 149.1 198 42.4
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.1e-31 141.7 136 54.4
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 2.4e-31 140.6 103 65.0
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.5e-30 136.3 94 70.2
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 7.7e-30 135.6 116 62.1
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.2e-29 134.0 94 68.1
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.0e-26 123.6 87 69.0
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.0e-26 123.2 83 72.3
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 9.7e-25 118.6 349 26.4
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.5e-21 105.9 79 65.8
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 8.5e-21 105.5 104 60.6
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.5e-20 104.0 78 65.4
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.5e-20 104.0 78 65.4
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.5e-20 104.0 79 64.6
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 5.5e-20 102.8 78 65.4
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 7.2e-20 102.4 78 62.8
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.4e-20 102.1 78 64.1
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 1.6e-19 101.3 110 48.2
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.7e-19 100.5 79 62.0
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.7e-19 100.5 78 64.1
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.6e-19 100.1 70 68.6
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.0e-18 98.6 79 60.8
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 4.0e-18 96.7 87 58.6
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 8.8e-18 95.5 110 46.4
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.0e-17 94.4 101 51.5
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 4.8e-16 89.7 75 60.0
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 9.1e-15 85.5 60 71.7
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 1.6e-14 84.7 45 91.1
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 1.0e-13 82.0 67 65.7
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.2e-12 76.6 56 66.1
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.6e-11 74.7 86 48.8
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 1.5e-09 68.2 51 68.6
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 3.7e-08 63.5 43 72.1
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 2.4e-07 60.8 42 71.4
Cc09_g06650 Coffea canephora HOM05D004259 ORTHO05D005014 7.0e-07 59.3 42 66.7
Cc10_g11800 Coffea canephora HOM05D006912 ORTHO05D008686 9.2e-07 58.9 43 67.4
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.2e-06 58.5 43 65.1
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 2.0e-06 57.8 54 55.6
Gohir.D01G066700 Gossypium hirsutum HOM05D000706 ORTHO05D013538 7.8e-06 55.8 49 55.1


User provided reference genes

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