Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G026070 Cucumis sativus L. HOM05D006323 ORTHO05D007827 1.7e-279 965.3 466 100.0
MELO3C010800.2 Cucumis melo HOM05D006323 ORTHO05D007827 1.9e-270 935.3 466 97.0
ClCG08G016540 Citrullus lanatus HOM05D006323 ORTHO05D007827 2.2e-263 911.8 466 93.8
Sed0007452 Sechium edule HOM05D006323 ORTHO05D007827 1.4e-238 829.3 465 84.1
Dinv44950 Davidia involucrata HOM05D006323 ORTHO05D007827 1.4e-188 663.3 462 67.7
CiPaw.07G174200 Carya illinoinensis HOM05D006323 ORTHO05D007827 1.8e-188 662.9 469 69.1
Haze_22429 Corylus avellana HOM05D006323 ORTHO05D007827 1.1e-185 653.7 468 68.6
QL12p038177 Quercus lobata HOM05D006323 ORTHO05D007827 9.2e-185 650.6 470 68.7
Hma1.2p1_0819F.1_g223630 Hydrangea macrophylla HOM05D006323 ORTHO05D007827 1.6e-181 639.8 468 64.7
Cfa013771 Carpinus fangiana HOM05D006323 ORTHO05D007827 4.4e-179 631.7 468 66.9
Actinidia38108 Actinidia chinensis HOM05D006323 ORTHO05D007827 1.1e-177 627.1 465 64.3
Nn5g30609 Nelumbo nucifera HOM05D006323 ORTHO05D007827 7.1e-177 624.4 454 64.5
CSS0045238 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 3.0e-175 619.0 470 63.0
TAR381G1608 Trochodendron aralioides HOM05D006323 ORTHO05D007827 6.6e-175 617.8 454 63.7
CANSAT25G0442 Cannabis sativa HOM05D006323 ORTHO05D007827 1.5e-174 616.7 454 65.4
TAR381G0342 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.5e-174 616.7 469 62.0
CSS0024022 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 5.6e-174 614.8 470 62.8
Prupe.1G422100 Prunus persica HOM05D006323 ORTHO05D007827 1.6e-168 596.7 465 61.3
CSS0010458 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 7.3e-166 587.8 472 60.2
arahy.Tifrunner.gnm1.ann1.JK4I75 Arachis hypogaea HOM05D006323 ORTHO05D007827 1.2e-165 587.0 475 61.5
PSO675G0675 Papaver somniferum HOM05D006323 ORTHO05D007827 4.7e-165 585.1 477 59.7
PSO541G5960 Papaver somniferum HOM05D006323 ORTHO05D007827 1.8e-164 583.2 466 60.5
CSS0050369 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 8.9e-164 580.9 471 60.5
vmacro22049 Vaccinium macrocarpon HOM05D006323 ORTHO05D007827 9.9e-163 577.4 467 61.5
Nitab4.5_0000497g0170 Nicotiana tabacum HOM05D006323 ORTHO05D007827 2.1e-160 569.7 457 59.1
Lalb_Chr14g0368151 Lupinus albus HOM05D006323 ORTHO05D007827 2.3e-159 566.2 481 58.6
Nitab4.5_0003725g0070 Nicotiana tabacum HOM05D006323 ORTHO05D007827 6.6e-159 564.7 460 59.3
Eucgr.F00088 Eucalyptus grandis HOM05D006323 ORTHO05D007827 1.4e-156 557.0 463 58.5
Rhsim07G0219300 Rhododendron simsii HOM05D006323 ORTHO05D007827 2.4e-156 556.2 460 59.6
Sopen04g031380 Solanum pennellii HOM05D006323 ORTHO05D007827 3.1e-156 555.8 453 57.8
PGSC0003DMG400010620 Solanum tuberosum HOM05D006323 ORTHO05D007827 3.4e-155 552.4 456 57.2
Aqoxy6G02596 Aquilegia oxysepala HOM05D006323 ORTHO05D007827 5.8e-155 551.6 474 57.4
TWI56G0563 Tripterygium wilfordii HOM05D006323 ORTHO05D007827 1.3e-154 550.4 469 58.0
Ca_13213_v3 Cicer arietinum L. HOM05D006323 ORTHO05D007827 2.9e-154 549.3 472 59.3
Manes.18G047100 Manihot esculenta HOM05D006323 ORTHO05D007827 3.8e-154 548.9 462 57.8
RcHm_v2.0_Chr6g0309741 Rosa chinensis HOM05D006323 ORTHO05D007827 3.8e-154 548.9 462 58.2
Thecc.08G088000 Theobroma cacao HOM05D006323 ORTHO05D007827 6.4e-154 548.1 469 58.6
Cpa.g.sc142.31 Carica papaya HOM05D006323 ORTHO05D007827 2.1e-152 543.1 457 55.1
FAN20G1244 Fragaria x ananassa HOM05D006323 ORTHO05D007827 4.6e-152 542.0 454 58.4
Duzib093G0619 Durio zibethinus HOM05D006323 ORTHO05D007827 6.0e-152 541.6 457 58.6
Oeu016579.1 Olea europaea HOM05D006323 ORTHO05D007827 1.7e-151 540.0 468 56.0
Cpa.g.sc142.34 Carica papaya HOM05D006323 ORTHO05D007827 3.0e-151 539.3 457 54.5
Gohir.A05G210400 Gossypium hirsutum HOM05D006323 ORTHO05D007827 8.7e-151 537.7 456 58.8
Gorai.009G220400 Gossypium raimondii HOM05D006323 ORTHO05D007827 8.7e-151 537.7 456 58.6
Lj5g0017088 Lotus japonicus HOM05D006323 ORTHO05D007827 8.7e-151 537.7 468 58.8
FvH4_2g32960 Fragaria vesca HOM05D006323 ORTHO05D007827 2.5e-150 536.2 454 57.7
Psat6g018000 Pisum sativum HOM05D006323 ORTHO05D007827 2.5e-150 536.2 485 55.9
GSVIVG01009337001 Vitis vinifera HOM05D006323 ORTHO05D007827 5.6e-150 535.0 466 58.2
PGR083G0013 Punica granatum HOM05D006323 ORTHO05D007827 7.3e-150 534.6 456 57.9
FAN24G0652 Fragaria x ananassa HOM05D006323 ORTHO05D007827 1.3e-149 533.9 469 56.3
Gohir.D05G213700 Gossypium hirsutum HOM05D006323 ORTHO05D007827 2.1e-149 533.1 456 57.9
TPR.G13155 Trifolium pratense HOM05D006323 ORTHO05D007827 2.1e-149 533.1 472 57.4
Potri.002G117900 Populus trichocarpa HOM05D006323 ORTHO05D007827 1.4e-148 530.4 450 57.1
Migut.N02786 Erythranthe guttata HOM05D006323 ORTHO05D007827 1.8e-148 530.0 454 55.9
FAN15G2783 Fragaria x ananassa HOM05D006323 ORTHO05D007827 3.1e-148 529.3 454 56.8
Medtr1g017940 Medicago truncatula HOM05D006323 ORTHO05D007827 6.9e-148 528.1 486 56.6
FAN27G3326 Fragaria x ananassa HOM05D006323 ORTHO05D007827 9.0e-148 527.7 454 57.0
Hund05295 Selenicereus undatus HOM05D006323 ORTHO05D007827 1.5e-147 526.9 467 55.0
Sabra02G0092600 Salix brachista HOM05D006323 ORTHO05D007827 1.3e-146 523.9 450 57.8
EL10Ac1g02373 Beta vulgaris HOM05D006323 ORTHO05D007827 6.4e-146 521.5 469 55.7
CAN.G724.32 Capsicum annuum HOM05D006323 ORTHO05D007827 7.1e-145 518.1 455 56.0
Phvul.001G028300 Phaseolus vulgaris HOM05D006323 ORTHO05D007827 4.6e-144 515.4 463 56.2
Glyma.17G234600 Glycine max HOM05D006323 ORTHO05D007827 3.9e-143 512.3 471 55.2
HanXRQChr10g0298611 Helianthus annuus HOM05D006323 ORTHO05D007827 1.9e-142 510.0 474 53.8
Atru.chr13.839 Acer truncatum HOM05D006323 ORTHO05D007827 7.4e-142 508.1 458 55.9
Ciclev10001174m.g Citrus clementina HOM05D006323 ORTHO05D007827 5.3e-140 501.9 459 54.9
arahy.Tifrunner.gnm1.ann1.694GR7 Arachis hypogaea HOM05D006323 ORTHO05D007827 5.8e-139 498.4 428 58.9
SalBow2G0555 Salvia bowleyana HOM05D006323 ORTHO05D007827 1.4e-137 493.8 467 52.5
Glyma.14G089027 Glycine max HOM05D006323 ORTHO05D007827 5.5e-137 491.9 476 54.6
SGA_v2.0_scaffold28G11834 Striga asiatica HOM05D006323 ORTHO05D007827 3.5e-136 489.2 461 53.4
Lsat_1_v5_gn_1_1301 Lactuca sativa HOM05D006323 ORTHO05D007827 3.1e-132 476.1 476 52.1
VMungo0647G1220 Vigna mungo HOM05D006323 ORTHO05D007827 2.9e-130 469.5 467 53.1
TAR625G0711 Trochodendron aralioides HOM05D006323 ORTHO05D007827 5.5e-129 465.3 444 53.2
THA.LOC104825780 Tarenaya hassleriana HOM05D006323 ORTHO05D007827 1.0e-127 461.1 451 50.8
CDE04G3275 Ceratophyllum demersum HOM05D006323 ORTHO05D007827 5.7e-126 455.3 452 50.7
AUR62022472 Chenopodium quinoa HOM05D006323 ORTHO05D007827 2.8e-125 453.0 477 49.3
HPP92_013407 Vanilla planifolia HOM05D006323 ORTHO05D007827 4.5e-123 445.7 454 48.9
Ah.05g167080 Amaranthus hybridus HOM05D006323 ORTHO05D007827 1.8e-119 433.7 461 49.7
QL05p065459 Quercus lobata HOM05D006323 ORTHO05D007827 2.0e-118 430.3 317 68.5
Thhalv10028685m.g Eutrema salsugineum HOM05D006323 ORTHO05D007827 5.7e-118 428.7 452 49.1
Carub.0003s1171 Capsella rubella HOM05D006323 ORTHO05D007827 7.4e-118 428.3 451 49.9
Sp6g10510 Schrenkiella parvula HOM05D006323 ORTHO05D007827 3.7e-117 426.0 455 49.0
Sc26g0004210 Simmondsia chinensis HOM05D006323 ORTHO05D007827 4.8e-117 425.6 416 51.9
ATR0739G201 Amborella trichopoda HOM05D006323 ORTHO05D007827 1.2e-115 421.0 494 48.8
Aa31LG5G21510 Aethionema arabicum HOM05D006323 ORTHO05D007827 6.5e-114 415.2 454 46.3
Lj4A71T64 Lonicera japonica HOM05D006323 ORTHO05D007827 4.2e-113 412.5 320 62.5
AL3G24000 Arabidopsis lyrata HOM05D006323 ORTHO05D007827 7.2e-113 411.8 453 49.0
CARHR287100 Cardamine hirsuta HOM05D006323 ORTHO05D007827 9.4e-113 411.4 451 47.7
C03p33680 Brassica napus HOM05D006323 ORTHO05D007827 1.3e-109 401.0 454 46.7
BolC3t15688H Brassica oleracea HOM05D006323 ORTHO05D007827 1.3e-109 401.0 454 46.7
AT3G12350 Arabidopsis thaliana HOM05D006323 ORTHO05D007827 6.3e-109 398.7 453 47.9
BcaC01g04786 Brassica carinata HOM05D006323 ORTHO05D007827 1.5e-105 387.5 453 45.7
A03p27900 Brassica napus HOM05D006323 ORTHO05D007827 1.9e-105 387.1 454 45.6
BraA03t12002Z Brassica rapa HOM05D006323 ORTHO05D007827 1.0e-103 381.3 454 44.9
CAN.G724.31 Capsicum annuum HOM05D006323 ORTHO05D007827 1.0e-103 381.3 452 43.6
BcaB01g02882 Brassica carinata HOM05D006323 ORTHO05D007827 2.3e-103 380.2 450 45.3
AUR62037416 Chenopodium quinoa HOM05D006323 ORTHO05D007827 3.7e-101 372.9 467 42.8
BcaC01g04794 Brassica carinata HOM05D006323 ORTHO05D007827 4.4e-94 349.4 453 43.3
HPP92_013383 Vanilla planifolia HOM05D006323 ORTHO05D007827 1.3e-93 347.8 368 47.8
Cc10_g05020 Coffea canephora HOM05D006323 ORTHO05D007827 6.6e-82 308.9 278 56.5
TAR628G0857 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.6e-80 304.3 289 52.6
ECA247G3150 Erigeron canadensis HOM05D006323 ORTHO05D007827 2.2e-77 293.9 324 50.9
COL.COLO4_28496 Corchorus olitorius HOM05D006323 ORTHO05D007827 4.6e-75 286.2 246 56.9
Mapoly0007s0129 Marchantia polymorpha HOM05D006323 ORTHO05D007827 1.0e-74 285.0 499 34.1
SEGI_30290 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 1.5e-62 244.6 325 41.8
Os12g0511000 Oryza sativa ssp. japonica HOM05D006323 ORTHO05D007827 7.5e-62 242.3 457 35.0
Pp3c15_12240 Physcomitrium patens HOM05D006323 ORTHO05D007827 4.6e-59 233.0 525 31.4
unitig_8.g4874 Utricularia gibba HOM05D006323 ORTHO05D007827 2.1e-51 207.6 242 49.2
AagrBONN_evm.TU.Sc2ySwM_362.2944 Anthoceros agrestis HOM05D006323 ORTHO05D007827 1.5e-46 191.4 361 34.1
CBR_g25752 Chara braunii HOM05D006323 ORTHO05D007827 7.3e-41 172.6 556 26.4
Eucgr.L02719 Eucalyptus grandis HOM05D006323 ORTHO05D007827 3.6e-40 170.2 150 52.7
HPP92_013381 Vanilla planifolia HOM05D006323 ORTHO05D007827 5.6e-33 146.4 194 42.3
TAR623G1714 Trochodendron aralioides HOM05D006323 ORTHO05D007827 2.8e-32 144.1 99 62.6
FvH4_3g44630 Fragaria vesca HOM05D006323 ORTHO05D007827 2.4e-31 141.0 99 65.7
MD08G1081200 Malus domestica HOM05D006323 ORTHO05D007827 5.5e-28 129.8 122 54.1
COL.COLO4_28497 Corchorus olitorius HOM05D006323 ORTHO05D007827 2.1e-27 127.9 132 47.7
Lj5P501T7 Lonicera japonica HOM05D006323 ORTHO05D007827 1.5e-25 121.7 90 70.0
SEGI_04434 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 4.3e-25 120.2 166 36.7
Lj1P1160T24 Lonicera japonica HOM05D006323 ORTHO05D007827 3.7e-24 117.1 76 75.0
unitig_8.g4875 Utricularia gibba HOM05D006323 ORTHO05D007827 1.8e-23 114.8 105 49.5
QL04p027551 Quercus lobata HOM05D006323 ORTHO05D007827 6.9e-23 112.8 93 59.1
Zm00001eb264620 Zea mays HOM05D006323 ORTHO05D007827 1.0e-21 109.0 248 31.9
Eucgr.C01112 Eucalyptus grandis HOM05D006323 ORTHO05D007827 3.2e-20 104.0 91 52.7
TAR623G1335 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.3e-18 98.6 65 66.2
HPP92_006886 Vanilla planifolia HOM05D003519 ORTHO05D004443 2.5e-09 67.8 188 28.2
DCAR_019993 Daucus carota HOM05D003519 ORTHO05D004443 3.3e-09 67.4 156 28.8
Oeu037483.1 Olea europaea HOM05D006323 ORTHO05D007827 2.2e-08 64.7 137 36.5
Nn1g08957 Nelumbo nucifera HOM05D003519 ORTHO05D004443 4.1e-07 60.5 135 29.6
Migut.L00390 Erythranthe guttata HOM05D003519 ORTHO05D004443 6.9e-07 59.7 141 29.8


User provided reference genes

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