Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G026020 Cucumis sativus L. HOM05D002412 ORTHO05D002516 2.6e-92 342.0 170 100.0
MELO3C010796.2 Cucumis melo HOM05D002412 ORTHO05D002516 3.2e-79 298.5 164 93.9
ClCG08G016590 Citrullus lanatus HOM05D002412 ORTHO05D002516 2.7e-73 278.9 180 82.8
Sed0010950 Sechium edule HOM05D002412 ORTHO05D002516 1.0e-45 187.2 169 65.7
Potri.002G117600 Populus trichocarpa HOM05D002412 ORTHO05D002516 2.1e-17 93.2 175 39.4
MD08G1080400 Malus domestica HOM05D002412 ORTHO05D002516 1.0e-16 90.9 181 39.8
QL12p038263 Quercus lobata HOM05D002412 ORTHO05D002516 1.3e-16 90.5 180 41.7
Prupe.1G421400 Prunus persica HOM05D002412 ORTHO05D002516 2.3e-16 89.7 181 38.7
Manes.18G047500 Manihot esculenta HOM05D002412 ORTHO05D002516 6.6e-16 88.2 170 38.8
QL93p0154_0003 Quercus lobata HOM05D002412 ORTHO05D002516 1.5e-15 87.0 191 39.3
Sed0022600 Sechium edule HOM05D002412 ORTHO05D002516 1.9e-15 86.7 165 39.4
GSVIVG01037808001 Vitis vinifera HOM05D002412 ORTHO05D002516 2.5e-15 86.3 184 39.1
Sabra02G0092100 Salix brachista HOM05D002412 ORTHO05D002516 4.3e-15 85.5 171 39.8
Lj9A332T16 Lonicera japonica HOM05D002412 ORTHO05D002516 9.6e-15 84.3 173 37.6
Potri.014G015000 Populus trichocarpa HOM05D002412 ORTHO05D002516 3.6e-14 82.4 173 38.2
Lj9A329T24 Lonicera japonica HOM05D002412 ORTHO05D002516 6.2e-14 81.6 173 37.0
Gohir.D05G214100 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.1e-13 80.9 172 36.6
MELO3C016826.2 Cucumis melo HOM05D002412 ORTHO05D002516 2.4e-13 79.7 169 36.7
VMungo0647G1017 Vigna mungo HOM05D002412 ORTHO05D002516 2.4e-13 79.7 171 37.4
Dinv44944 Davidia involucrata HOM05D002412 ORTHO05D002516 3.1e-13 79.3 152 41.4
TWI12G0333 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 3.1e-13 79.3 150 40.0
CiPaw.08G050800 Carya illinoinensis HOM05D002412 ORTHO05D002516 4.0e-13 79.0 150 42.0
Thecc.08G086800 Theobroma cacao HOM05D002412 ORTHO05D002516 4.0e-13 79.0 186 39.2
Nn6g34504 Nelumbo nucifera HOM05D002412 ORTHO05D002516 5.3e-13 78.6 162 37.0
CiPaw.07G173700 Carya illinoinensis HOM05D002412 ORTHO05D002516 6.9e-13 78.2 181 34.8
Duzib093G1945 Durio zibethinus HOM05D002412 ORTHO05D002516 9.0e-13 77.8 134 40.3
HanXRQChr03g0065031 Helianthus annuus HOM05D002412 ORTHO05D002516 9.0e-13 77.8 146 37.7
Nitab4.5_0003725g0030 Nicotiana tabacum HOM05D002412 ORTHO05D002516 9.0e-13 77.8 149 36.9
Rhsim06G0063100 Rhododendron simsii HOM05D002412 ORTHO05D002516 9.0e-13 77.8 176 36.4
Phvul.001G028800 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 1.2e-12 77.4 175 38.9
Aqoxy6G02560 Aquilegia oxysepala HOM05D002412 ORTHO05D002516 1.5e-12 77.0 170 39.4
Gohir.A05G210800 Gossypium hirsutum HOM05D002412 ORTHO05D002516 2.0e-12 76.6 172 35.5
MSTRG.22217 Avicennia marina HOM05D002412 ORTHO05D002516 2.6e-12 76.3 185 35.1
CsaV3_4G035130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 2.6e-12 76.3 173 35.8
MSTRG.24380 Avicennia marina HOM05D002412 ORTHO05D002516 4.5e-12 75.5 151 39.7
Ciclev10002703m.g Citrus clementina HOM05D002412 ORTHO05D002516 4.5e-12 75.5 157 35.0
Gohir.A02G080700 Gossypium hirsutum HOM05D002412 ORTHO05D002516 4.5e-12 75.5 193 35.8
Gorai.009G220800 Gossypium raimondii HOM05D002412 ORTHO05D002516 5.8e-12 75.1 124 38.7
Nn5g30629 Nelumbo nucifera HOM05D002412 ORTHO05D002516 5.8e-12 75.1 184 38.0
CANSAT25G2021 Cannabis sativa HOM05D002412 ORTHO05D002516 7.6e-12 74.7 163 38.7
Glyma.14G089039 Glycine max HOM05D002412 ORTHO05D002516 7.6e-12 74.7 172 37.8
TAR376G0005 Trochodendron aralioides HOM05D002412 ORTHO05D002516 7.6e-12 74.7 179 37.4
Oeu036975.1 Olea europaea HOM05D002412 ORTHO05D002516 1.3e-11 73.9 166 36.7
Haze_22419 Corylus avellana HOM05D002412 ORTHO05D002516 1.7e-11 73.6 108 46.3
Gohir.D02G088500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.7e-11 73.6 193 35.8
TWI12G0423 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 2.2e-11 73.2 151 35.8
Gorai.005G099200 Gossypium raimondii HOM05D002412 ORTHO05D002516 2.9e-11 72.8 193 35.8
Actinidia04390 Actinidia chinensis HOM05D002412 ORTHO05D002516 4.9e-11 72.0 163 35.0
ClCG05G020680 Citrullus lanatus HOM05D002412 ORTHO05D002516 4.9e-11 72.0 168 35.7
COL.COLO4_28483 Corchorus olitorius HOM05D002412 ORTHO05D002516 4.9e-11 72.0 128 43.8
Dinv15818 Davidia involucrata HOM05D002412 ORTHO05D002516 4.9e-11 72.0 155 37.4
Dinv42242 Davidia involucrata HOM05D002412 ORTHO05D002516 4.9e-11 72.0 172 37.2
Glyma.04G046600 Glycine max HOM05D002412 ORTHO05D002516 4.9e-11 72.0 178 39.3
Glyma.01G242100 Glycine max HOM05D002412 ORTHO05D002516 6.4e-11 71.6 181 34.8
Lalb_Chr11g0062941 Lupinus albus HOM05D002412 ORTHO05D002516 6.4e-11 71.6 150 39.3
TAR381G0181 Trochodendron aralioides HOM05D002412 ORTHO05D002516 6.4e-11 71.6 178 38.2
TPR.G8322 Trifolium pratense HOM05D002412 ORTHO05D002516 8.4e-11 71.2 155 36.1
Atru.chr13.848 Acer truncatum HOM05D002412 ORTHO05D002516 1.1e-10 70.9 136 36.8
Peaxi162Scf00081g00269 Petunia axillaris HOM05D002412 ORTHO05D002516 1.1e-10 70.9 159 34.6
Cfa004671 Carpinus fangiana HOM05D002412 ORTHO05D002516 1.4e-10 70.5 165 37.6
Psat4g227320 Pisum sativum HOM05D002412 ORTHO05D002516 1.4e-10 70.5 155 32.9
Sopen01g049190 Solanum pennellii HOM05D002412 ORTHO05D002516 1.4e-10 70.5 173 37.0
MD15G1067500 Malus domestica HOM05D002412 ORTHO05D002516 2.4e-10 69.7 176 35.8
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 3.2e-10 69.3 152 37.5
Hma1.2p1_1059F.1_g253110 Hydrangea macrophylla HOM05D002412 ORTHO05D002516 3.2e-10 69.3 181 33.1
TWI56G0446 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 3.2e-10 69.3 156 38.5
vmacro01953 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 3.2e-10 69.3 130 36.2
TPR.G33675 Trifolium pratense HOM05D002412 ORTHO05D002516 4.2e-10 68.9 186 35.5
Glyma.17G234000 Glycine max HOM05D002412 ORTHO05D002516 5.4e-10 68.6 176 36.9
THA.LOC104807210 Tarenaya hassleriana HOM05D002412 ORTHO05D002516 5.4e-10 68.6 177 31.6
Oeu020549.2 Olea europaea HOM05D002412 ORTHO05D002516 7.1e-10 68.2 163 33.1
Eucgr.F00090 Eucalyptus grandis HOM05D002412 ORTHO05D002516 9.3e-10 67.8 169 36.1
Glyma.11G002100 Glycine max HOM05D002412 ORTHO05D002516 9.3e-10 67.8 177 33.9
Lalb_Chr21g0308011 Lupinus albus HOM05D002412 ORTHO05D002516 9.3e-10 67.8 157 34.4
Nitab4.5_0001458g0070 Nicotiana tabacum HOM05D002412 ORTHO05D002516 9.3e-10 67.8 178 37.1
Solyc01g106910.4 Solanum lycopersicum HOM05D002412 ORTHO05D002516 9.3e-10 67.8 167 37.1
BcaC09g52190 Brassica carinata HOM05D002412 ORTHO05D002516 1.2e-09 67.4 155 35.5
C07p59890 Brassica napus HOM05D002412 ORTHO05D002516 1.2e-09 67.4 152 36.8
BolC7t46433H Brassica oleracea HOM05D002412 ORTHO05D002516 1.2e-09 67.4 168 35.1
Lalb_Chr06g0165021 Lupinus albus HOM05D002412 ORTHO05D002516 1.2e-09 67.4 122 41.8
Oeu037285.1 Olea europaea HOM05D002412 ORTHO05D002516 1.2e-09 67.4 161 35.4
vmacro19537 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 1.2e-09 67.4 188 32.4
Eucgr.I01046 Eucalyptus grandis HOM05D002412 ORTHO05D002516 1.6e-09 67.0 194 31.4
Nitab4.5_0000497g0080 Nicotiana tabacum HOM05D002412 ORTHO05D002516 1.6e-09 67.0 119 38.7
PGSC0003DMG401011556 Solanum tuberosum HOM05D002412 ORTHO05D002516 1.6e-09 67.0 176 35.8
Actinidia10209 Actinidia chinensis HOM05D002412 ORTHO05D002516 2.1e-09 66.6 179 34.6
CSS0003834 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 2.1e-09 66.6 179 36.3
RhsimUnG0041400 Rhododendron simsii HOM05D002412 ORTHO05D002516 2.1e-09 66.6 159 35.2
RhsimUnG0123400 Rhododendron simsii HOM05D002412 ORTHO05D002516 2.1e-09 66.6 159 35.2
A03p62330 Brassica napus HOM05D002412 ORTHO05D002516 2.7e-09 66.2 151 37.1
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 2.7e-09 66.2 151 37.1
Rhsim05G0091500 Rhododendron simsii HOM05D002412 ORTHO05D002516 2.7e-09 66.2 161 36.0
Actinidia19303 Actinidia chinensis HOM05D002412 ORTHO05D002516 3.5e-09 65.9 177 35.0
A01p04520 Brassica napus HOM05D002412 ORTHO05D002516 3.5e-09 65.9 162 32.7
BolC1t00474H Brassica oleracea HOM05D002412 ORTHO05D002516 4.6e-09 65.5 152 36.8
BraA01t00437Z Brassica rapa HOM05D002412 ORTHO05D002516 4.6e-09 65.5 162 32.7
TAR628G0919 Trochodendron aralioides HOM05D002412 ORTHO05D002516 4.6e-09 65.5 171 36.8
VMungo1215G2231 Vigna mungo HOM05D002412 ORTHO05D002516 4.6e-09 65.5 164 34.1
DCAR_020053 Daucus carota HOM05D002412 ORTHO05D002516 6.0e-09 65.1 171 35.7
Nitab4.5_0003953g0040 Nicotiana tabacum HOM05D002412 ORTHO05D002516 6.0e-09 65.1 179 32.4
Nitab4.5_0007781g0010 Nicotiana tabacum HOM05D002412 ORTHO05D002516 6.0e-09 65.1 177 34.5
Psat6g017720 Pisum sativum HOM05D002412 ORTHO05D002516 6.0e-09 65.1 147 35.4
Ciclev10029343m.g Citrus clementina HOM05D002412 ORTHO05D002516 7.9e-09 64.7 173 32.9
C01p04900 Brassica napus HOM05D002412 ORTHO05D002516 1.0e-08 64.3 163 34.4
Cc10_g05040 Coffea canephora HOM05D002412 ORTHO05D002516 1.0e-08 64.3 128 37.5
Gohir.D12G019500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.0e-08 64.3 161 34.8
Gorai.008G019800 Gossypium raimondii HOM05D002412 ORTHO05D002516 1.0e-08 64.3 161 34.8
Psat0ss7070g0040 Pisum sativum HOM05D002412 ORTHO05D002516 1.0e-08 64.3 181 33.7
Sed0002993 Sechium edule HOM05D002412 ORTHO05D002516 1.0e-08 64.3 169 32.5
Sed0010289 Sechium edule HOM05D002412 ORTHO05D002516 1.0e-08 64.3 181 34.3
Solyc12g088300.2 Solanum lycopersicum HOM05D002412 ORTHO05D002516 1.0e-08 64.3 176 35.2
THA.LOC104824967 Tarenaya hassleriana HOM05D002412 ORTHO05D002516 1.0e-08 64.3 172 36.6
Actinidia00360 Actinidia chinensis HOM05D002412 ORTHO05D002516 1.3e-08 63.9 175 35.4
AUR62041661 Chenopodium quinoa HOM05D002412 ORTHO05D002516 1.3e-08 63.9 158 34.2
Duzib041G0516 Durio zibethinus HOM05D002412 ORTHO05D002516 1.8e-08 63.5 184 32.6
Gohir.A12G019300 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.8e-08 63.5 161 34.8
Psat6g214680 Pisum sativum HOM05D002412 ORTHO05D002516 1.8e-08 63.5 166 36.1
Sopen12g030300 Solanum pennellii HOM05D002412 ORTHO05D002516 1.8e-08 63.5 176 34.1
FAN15G1065 Fragaria x ananassa HOM05D002412 ORTHO05D002516 2.3e-08 63.2 107 43.9
unitig_0.g1046 Utricularia gibba HOM05D002412 ORTHO05D002516 2.3e-08 63.2 129 37.2
DCAR_001741 Daucus carota HOM05D002412 ORTHO05D002516 3.0e-08 62.8 155 31.6
Lj5g0023078 Lotus japonicus HOM05D002412 ORTHO05D002516 3.0e-08 62.8 165 35.8
Oeu048571.1 Olea europaea HOM05D002412 ORTHO05D002516 3.0e-08 62.8 167 35.3
PSO170G3219 Papaver somniferum HOM05D002412 ORTHO05D002516 3.0e-08 62.8 179 35.2
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 3.9e-08 62.4 154 37.0
Duzib052G0953 Durio zibethinus HOM05D002412 ORTHO05D002516 3.9e-08 62.4 168 38.7
Sp7g31540 Schrenkiella parvula HOM05D002412 ORTHO05D002516 3.9e-08 62.4 159 35.2
Oeu053627.1 Olea europaea HOM05D002412 ORTHO05D002516 5.1e-08 62.0 123 35.8
Phvul.002G051300 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 5.1e-08 62.0 160 33.8
Thecc.02G118800 Theobroma cacao HOM05D002412 ORTHO05D002516 5.1e-08 62.0 180 33.3
BcaNung04670 Brassica carinata HOM05D002412 ORTHO05D002516 6.7e-08 61.6 156 37.8
CSS0002290 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 6.7e-08 61.6 179 33.0
Cc00_g17020 Coffea canephora HOM05D002412 ORTHO05D002516 6.7e-08 61.6 124 34.7
Lj1g0009349 Lotus japonicus HOM05D002412 ORTHO05D002516 6.7e-08 61.6 127 37.0
Oeu037507.3 Olea europaea HOM05D006761 ORTHO05D002516 6.7e-08 61.6 145 39.3
AT4G33800 Arabidopsis thaliana HOM05D002412 ORTHO05D002516 8.7e-08 61.2 163 31.9
Carub.0007s0663 Capsella rubella HOM05D002412 ORTHO05D002516 8.7e-08 61.2 168 32.1
Gohir.A06G024600 Gossypium hirsutum HOM05D002412 ORTHO05D002516 8.7e-08 61.2 170 31.8
Gorai.010G026300 Gossypium raimondii HOM05D002412 ORTHO05D002516 8.7e-08 61.2 170 31.8
DCAR_012823 Daucus carota HOM05D002412 ORTHO05D002516 1.1e-07 60.8 115 37.4
FAN20G2155 Fragaria x ananassa HOM05D002412 ORTHO05D002516 1.1e-07 60.8 185 35.1
PSO017G0848 Papaver somniferum HOM05D002412 ORTHO05D002516 1.1e-07 60.8 179 33.5
Potri.009G086600 Populus trichocarpa HOM05D002412 ORTHO05D002516 1.1e-07 60.8 193 30.6
AL7G17660 Arabidopsis lyrata HOM05D002412 ORTHO05D002516 1.5e-07 60.5 158 30.4
CARHR241890 Cardamine hirsuta HOM05D002412 ORTHO05D002516 1.5e-07 60.5 158 33.5
Gohir.D06G021700 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.5e-07 60.5 170 32.4
Lalb_Chr02g0144931 Lupinus albus HOM05D002412 ORTHO05D002516 1.5e-07 60.5 163 33.7
Medtr1g106080 Medicago truncatula HOM05D002412 ORTHO05D002516 1.5e-07 60.5 160 37.5
Haze_10271 Corylus avellana HOM05D002412 ORTHO05D002516 1.9e-07 60.1 167 35.3
unitig_578.g16152 Utricularia gibba HOM05D002412 ORTHO05D002516 1.9e-07 60.1 109 37.6
MELO3C018019.2 Cucumis melo HOM05D002412 ORTHO05D002516 2.5e-07 59.7 180 33.3
ECA246G2811 Erigeron canadensis HOM05D002412 ORTHO05D002516 2.5e-07 59.7 124 36.3
Nitab4.5_0002040g0070 Nicotiana tabacum HOM05D002412 ORTHO05D002516 2.5e-07 59.7 175 34.3
Lj5g0012685 Lotus japonicus HOM05D002412 ORTHO05D002516 3.3e-07 59.3 165 32.7
Solyc04g077690.3 Solanum lycopersicum HOM05D002412 ORTHO05D002516 3.3e-07 59.3 159 34.0
Phvul.007G046700 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 4.3e-07 58.9 158 34.2
unitig_744.g24125 Utricularia gibba HOM05D002412 ORTHO05D002516 5.6e-07 58.5 111 36.9
Lsat_1_v5_gn_6_108580 Lactuca sativa HOM05D002412 ORTHO05D002516 7.4e-07 58.2 101 39.6
PGSC0003DMG400025836 Solanum tuberosum HOM05D002412 ORTHO05D002516 9.6e-07 57.8 187 33.2
TPR.G21149 Trifolium pratense HOM05D002412 ORTHO05D002516 9.6e-07 57.8 174 33.9
VMungo0720G0862 Vigna mungo HOM05D002412 ORTHO05D002516 9.6e-07 57.8 173 34.1
CiPaw.06G164900 Carya illinoinensis HOM05D002412 ORTHO05D002516 1.3e-06 57.4 178 32.0
Thhalv10026460m.g Eutrema salsugineum HOM05D002412 ORTHO05D002516 1.3e-06 57.4 154 34.4
Glyma.20G135500 Glycine max HOM05D002412 ORTHO05D002516 1.3e-06 57.4 172 30.8
PGR083G2271 Punica granatum HOM05D002412 ORTHO05D002516 1.3e-06 57.4 176 33.5
HPP92_020402 Vanilla planifolia HOM05D002412 ORTHO05D002516 1.3e-06 57.4 143 38.5
DCAR_009875 Daucus carota HOM05D002412 ORTHO05D002516 1.6e-06 57.0 173 31.2
DCAR_019349 Daucus carota HOM05D001207 ORTHO05D009015 1.6e-06 57.0 112 39.3
PGSC0003DMG400010615 Solanum tuberosum HOM05D002412 ORTHO05D002516 1.6e-06 57.0 133 35.3
Prupe.8G147000 Prunus persica HOM05D002412 ORTHO05D002516 2.1e-06 56.6 182 33.0
QL11p029982 Quercus lobata HOM05D002412 ORTHO05D002516 2.1e-06 56.6 178 32.0
Sc02g0007970 Simmondsia chinensis HOM05D002412 ORTHO05D002516 2.1e-06 56.6 157 30.6
ClCG10G010090 Citrullus lanatus HOM05D002412 ORTHO05D002516 2.8e-06 56.2 189 32.8
Peaxi162Scf00160g00517 Petunia axillaris HOM05D002412 ORTHO05D002516 2.8e-06 56.2 169 32.5
unitig_21.g20629 Utricularia gibba HOM05D002412 ORTHO05D002516 2.8e-06 56.2 147 37.4
Ca_13210_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 3.7e-06 55.8 115 40.0
CsaV3_4G000130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 3.7e-06 55.8 185 33.5
Potri.001G292100 Populus trichocarpa HOM05D002412 ORTHO05D002516 3.7e-06 55.8 179 31.8
Sabra14G0009000 Salix brachista HOM05D002412 ORTHO05D002516 3.7e-06 55.8 102 36.3
SalBow6G4199 Salvia bowleyana HOM05D002412 ORTHO05D002516 3.7e-06 55.8 154 32.5
GSVIVG01009322001 Vitis vinifera HOM05D002412 ORTHO05D002516 3.7e-06 55.8 110 37.3
Actinidia34355 Actinidia chinensis HOM05D002412 ORTHO05D002516 4.8e-06 55.5 189 32.3
ATR0739G138 Amborella trichopoda HOM05D002412 ORTHO05D002516 4.8e-06 55.5 117 39.3
CAN.G606.66 Capsicum annuum HOM05D002412 ORTHO05D002516 4.8e-06 55.5 167 31.7
AUR62022466 Chenopodium quinoa HOM05D002412 ORTHO05D002516 6.2e-06 55.1 160 33.1
Thhalv10023721m.g Eutrema salsugineum HOM05D014607 ORTHO05D016575 6.2e-06 55.1 179 32.4
Rhsim05G0092300 Rhododendron simsii HOM05D002412 ORTHO05D002516 6.2e-06 55.1 165 33.9


User provided reference genes

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