Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 4.4e-97 357.8 167 100.0
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 3.2e-87 325.1 167 89.2
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 9.2e-87 323.6 167 88.6
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 1.2e-78 296.6 167 77.8
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 1.2e-78 296.6 167 77.8
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 4.6e-78 294.7 167 77.2
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.0e-77 293.5 167 77.2
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.0e-77 293.5 167 77.2
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 1.0e-77 293.5 167 77.2
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 2.3e-77 292.4 166 77.7
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 2.3e-77 292.4 167 76.6
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 3.9e-77 291.6 167 77.2
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 3.3e-76 288.5 167 75.4
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 4.3e-76 288.1 167 74.9
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 5.6e-76 287.7 166 75.9
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 9.6e-76 287.0 167 74.9
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 1.2e-75 286.6 167 77.2
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 1.6e-75 286.2 167 76.0
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 1.6e-75 286.2 167 75.4
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 1.6e-75 286.2 167 74.9
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 6.2e-75 284.3 167 74.3
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 6.2e-75 284.3 167 74.3
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 6.2e-75 284.3 167 75.4
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 4.0e-74 281.6 167 73.7
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 2.0e-73 279.3 167 72.5
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 2.0e-73 279.3 167 71.9
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 2.0e-73 279.3 167 75.4
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 3.4e-73 278.5 167 73.1
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 3.4e-73 278.5 167 73.1
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 9.9e-73 276.9 167 73.1
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 9.9e-73 276.9 167 75.4
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 1.7e-72 276.2 167 74.3
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 2.2e-72 275.8 137 92.0
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 1.9e-71 272.7 167 72.5
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 1.2e-70 270.0 162 69.8
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 1.6e-70 269.6 167 71.3
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 4.6e-70 268.1 167 69.5
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 7.8e-70 267.3 167 71.3
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 1.3e-69 266.5 167 70.1
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 1.3e-69 266.5 167 70.1
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 1.7e-69 266.2 167 71.9
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 3.9e-69 265.0 164 71.3
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 5.1e-69 264.6 164 70.1
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 6.6e-69 264.2 167 68.9
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 8.7e-69 263.8 167 68.3
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 4.3e-68 261.5 167 68.3
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 4.3e-68 261.5 167 68.9
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 4.3e-68 261.5 167 69.5
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 9.6e-68 260.4 167 68.3
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 1.3e-67 260.0 167 65.9
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 2.1e-67 259.2 167 67.7
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 3.6e-67 258.5 165 69.7
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 4.8e-67 258.1 166 66.9
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 6.2e-67 257.7 167 68.3
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 8.1e-67 257.3 174 68.4
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 1.8e-66 256.1 167 68.9
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 3.1e-66 255.4 168 68.5
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 3.1e-66 255.4 168 68.5
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 9.0e-66 253.8 168 67.9
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 9.0e-66 253.8 168 68.5
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 9.0e-66 253.8 168 68.5
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 1.5e-65 253.1 168 68.5
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 1.5e-65 253.1 168 68.5
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 2.0e-65 252.7 166 65.1
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 2.0e-65 252.7 168 67.9
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 3.4e-65 251.9 168 67.9
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 4.5e-65 251.5 164 66.5
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 5.8e-65 251.1 189 61.9
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 9.9e-65 250.4 168 67.9
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 9.9e-65 250.4 166 63.9
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 1.3e-64 250.0 167 67.1
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 1.3e-64 250.0 165 67.3
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.3e-64 250.0 167 67.1
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 2.2e-64 249.2 168 66.7
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.9e-64 248.8 166 63.3
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 2.9e-64 248.8 167 65.3
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 3.8e-64 248.4 166 63.3
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 3.8e-64 248.4 167 66.5
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 3.8e-64 248.4 167 66.5
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 4.9e-64 248.1 168 66.7
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 4.9e-64 248.1 168 66.7
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.1e-63 246.9 161 66.5
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 1.1e-63 246.9 167 64.7
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 1.1e-63 246.9 167 64.7
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 2.4e-63 245.7 178 64.6
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 2.4e-63 245.7 167 65.3
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 3.2e-63 245.4 168 67.3
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 1.6e-62 243.0 219 52.1
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 6.0e-62 241.1 179 59.8
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 1.0e-61 240.4 165 64.8
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 1.8e-61 239.6 167 62.9
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 2.3e-61 239.2 167 63.5
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 1.1e-60 236.9 167 63.5
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 7.4e-60 234.2 167 61.1
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 8.1e-59 230.7 168 63.1
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 1.4e-58 229.9 165 63.0
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 2.4e-58 229.2 167 61.7
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 1.5e-57 226.5 189 56.1
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 4.5e-57 224.9 203 52.2
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 5.8e-57 224.6 167 61.1
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 5.5e-55 218.0 166 58.4
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.8e-53 213.0 189 51.9
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 2.3e-53 212.6 165 58.2
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.1e-52 210.3 126 71.4
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 7.4e-52 207.6 167 53.3
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.3e-51 206.8 175 52.0
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 2.8e-51 205.7 166 57.2
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 1.4e-50 203.4 127 69.3
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 9.0e-50 200.7 166 55.4
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 2.0e-49 199.5 131 65.6
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 1.2e-46 190.3 136 62.5
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 6.0e-46 188.0 167 51.5
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 7.9e-46 187.6 167 53.3
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 3.9e-45 185.3 178 47.2
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 5.1e-45 184.9 167 54.5
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 1.9e-44 183.0 164 52.4
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 9.7e-44 180.6 116 69.0
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 3.7e-43 178.7 166 48.2
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 8.2e-43 177.6 128 63.3
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 1.1e-42 177.2 177 50.3
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 1.0e-40 170.6 165 49.7
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 2.2e-40 169.5 166 50.6
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 9.3e-39 164.1 134 53.0
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.2e-38 163.7 133 53.4
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 3.6e-38 162.2 164 50.0
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 4.6e-38 161.8 131 58.8
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 4.6e-38 161.8 167 47.9
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.4e-37 160.2 146 50.7
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 8.8e-37 157.5 131 53.4
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.5e-36 156.8 150 50.7
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 1.7e-35 153.3 97 64.9
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 1.7e-35 153.3 97 64.9
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 4.8e-35 151.8 98 66.3
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 8.2e-35 151.0 117 60.7
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 1.9e-31 139.8 127 51.2
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 5.7e-28 128.3 97 58.8
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 9.7e-28 127.5 183 42.6
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 5.9e-25 118.2 148 44.6
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 2.2e-24 116.3 80 62.5
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 3.8e-24 115.5 164 39.6
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 8.5e-24 114.4 128 39.8
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.9e-23 113.2 164 39.6
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 2.5e-23 112.8 112 49.1
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 2.2e-19 99.8 101 50.5
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.8e-19 99.4 92 48.9
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 2.6e-17 92.8 167 34.1
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.0e-16 88.6 64 60.9
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.0e-16 88.6 64 60.9
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 8.5e-16 87.8 67 58.2
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.2e-15 85.5 57 64.9
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 6.1e-14 81.6 64 57.8
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 8.0e-14 81.3 57 63.2
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.4e-13 80.5 64 56.2
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.5e-12 77.0 115 33.9
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 7.5e-12 74.7 61 50.8
MCO11G136 Micromonas commoda HOM05D004267 ORTHO05D005267 9.1e-10 67.8 168 31.0
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 2.0e-09 66.6 41 68.3
Thecc.06G107200 Theobroma cacao HOM05D004267 ORTHO05D044750 1.0e-08 64.3 129 33.3
Hma1.2p1_2790F.1_g328600 Hydrangea macrophylla HOM05D005814 ORTHO05D006821 5.0e-08 62.0 71 47.9
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 1.2e-06 57.4 47 57.4
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 3.6e-06 55.8 84 34.5
Haze_00845 Corylus avellana HOM05D021883 ORTHO05D034098 3.6e-06 55.8 139 23.7
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 8.0e-06 54.7 44 56.8


User provided reference genes

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