Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G025190 Cucumis sativus L. HOM05D001304 ORTHO05D008890 2.2e-126 455.7 232 100.0
Sed0004969 Sechium edule HOM05D001304 ORTHO05D008890 7.5e-103 377.5 234 84.2
Dinv11009 Davidia involucrata HOM05D001304 ORTHO05D008890 3.8e-99 365.2 231 81.0
Glyma.11G246700 Glycine max HOM05D001304 ORTHO05D008890 1.0e-96 357.1 238 76.5
Ciclev10032669m.g Citrus clementina HOM05D001304 ORTHO05D008890 1.8e-96 356.3 227 80.2
Haze_12318 Corylus avellana HOM05D001304 ORTHO05D008890 8.3e-94 347.4 231 77.5
FAN07G1515 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.2e-92 343.6 231 75.8
TWI36G0586 Tripterygium wilfordii HOM05D001304 ORTHO05D008890 1.6e-92 343.2 231 76.6
FvH4_4g24830 Fragaria vesca HOM05D001304 ORTHO05D008890 4.5e-92 341.7 232 75.4
Eucgr.H04690 Eucalyptus grandis HOM05D001304 ORTHO05D008890 5.9e-92 341.3 241 75.9
FAN12G0763 Fragaria x ananassa HOM05D001304 ORTHO05D008890 5.9e-92 341.3 231 75.3
FAN22G1346 Fragaria x ananassa HOM05D001304 ORTHO05D008890 5.9e-92 341.3 231 75.3
FAN17G2678 Fragaria x ananassa HOM05D001304 ORTHO05D008890 1.0e-91 340.5 231 75.3
PGR119G0865 Punica granatum HOM05D001304 ORTHO05D008890 1.0e-91 340.5 238 76.5
RcHm_v2.0_Chr4g0431911 Rosa chinensis HOM05D001304 ORTHO05D008890 1.7e-91 339.7 233 75.1
Manes.12G017100 Manihot esculenta HOM05D001304 ORTHO05D008890 2.3e-91 339.3 233 77.7
Phvul.001G258300 Phaseolus vulgaris HOM05D001304 ORTHO05D008890 5.0e-91 338.2 233 74.7
Cfa009288 Carpinus fangiana HOM05D001304 ORTHO05D008890 3.3e-90 335.5 229 76.4
VMungo1383G0240 Vigna mungo HOM05D001304 ORTHO05D008890 9.5e-90 334.0 233 73.4
BcaB03g15175 Brassica carinata HOM05D001304 ORTHO05D008890 2.1e-89 332.8 231 75.3
COL.COLO4_23565 Corchorus olitorius HOM05D001304 ORTHO05D008890 2.1e-89 332.8 234 74.8
Gohir.D04G181000 Gossypium hirsutum HOM05D001304 ORTHO05D008890 3.6e-89 332.0 238 75.6
Prupe.1G237600 Prunus persica HOM05D001304 ORTHO05D008890 4.7e-89 331.6 233 73.0
MSTRG.7966 Avicennia marina HOM05D001304 ORTHO05D008890 2.3e-88 329.3 224 76.8
BcaC08g46187 Brassica carinata HOM05D001304 ORTHO05D008890 6.8e-88 327.8 232 74.1
A07p32450 Brassica napus HOM05D001304 ORTHO05D008890 6.8e-88 327.8 229 75.5
BraA07t30869Z Brassica rapa HOM05D001304 ORTHO05D008890 6.8e-88 327.8 229 75.5
Oeu020321.1 Olea europaea HOM05D001304 ORTHO05D008890 6.8e-88 327.8 230 74.3
THA.LOC104825532 Tarenaya hassleriana HOM05D001304 ORTHO05D008890 6.8e-88 327.8 233 75.1
AT1G67700 Arabidopsis thaliana HOM05D001304 ORTHO05D008890 1.2e-87 327.0 231 74.0
TAR622G1249 Trochodendron aralioides HOM05D001304 ORTHO05D008890 1.5e-87 326.6 231 74.0
C06p42370 Brassica napus HOM05D001304 ORTHO05D007800 2.6e-87 325.9 230 74.3
Cc11_g16390 Coffea canephora HOM05D001304 ORTHO05D008890 2.6e-87 325.9 236 71.6
Sp5g22690 Schrenkiella parvula HOM05D001304 ORTHO05D008890 3.4e-87 325.5 229 74.2
Thhalv10019020m.g Eutrema salsugineum HOM05D001304 ORTHO05D008890 4.4e-87 325.1 231 73.2
AL2G26400 Arabidopsis lyrata HOM05D001304 ORTHO05D008890 1.3e-86 323.6 231 73.6
BcaC08g46045 Brassica carinata HOM05D001304 ORTHO05D008890 1.7e-86 323.2 229 74.7
C06p38480 Brassica napus HOM05D001304 ORTHO05D008890 1.7e-86 323.2 229 74.7
MD13G1108600 Malus domestica HOM05D001304 ORTHO05D008890 1.7e-86 323.2 237 70.0
CARHR060290 Cardamine hirsuta HOM05D001304 ORTHO05D008890 2.2e-86 322.8 237 71.3
Actinidia15135 Actinidia chinensis HOM05D001304 ORTHO05D008890 2.9e-86 322.4 233 72.5
Potri.010G053600 Populus trichocarpa HOM05D001304 ORTHO05D008890 2.9e-86 322.4 236 75.4
Carub.0002s1413 Capsella rubella HOM05D001304 ORTHO05D008890 3.7e-86 322.0 231 72.7
arahy.Tifrunner.gnm1.ann1.VHC2JK Arachis hypogaea HOM05D001304 ORTHO05D008890 4.9e-86 321.6 234 71.8
CANSAT01G0179 Cannabis sativa HOM05D001304 ORTHO05D008890 2.4e-85 319.3 237 71.3
Sabra10G0017000 Salix brachista HOM05D001304 ORTHO05D008890 5.4e-85 318.2 227 76.2
SGA_v2.0_scaffold484G52361 Striga asiatica HOM05D001304 ORTHO05D008890 1.6e-84 316.6 237 70.9
Aa31LG4G12100 Aethionema arabicum HOM05D001304 ORTHO05D008890 2.0e-84 316.2 231 72.3
Ca_16494_v3 Cicer arietinum L. HOM05D001304 ORTHO05D008890 3.5e-84 315.5 232 73.3
AUR62005553 Chenopodium quinoa HOM05D001304 ORTHO05D008890 1.7e-83 313.2 232 69.8
Nitab4.5_0000041g0390 Nicotiana tabacum HOM05D001304 ORTHO05D008890 1.7e-83 313.2 231 74.0
SalBow2G0118 Salvia bowleyana HOM05D001304 ORTHO05D008890 6.6e-83 311.2 231 70.1
BolC6t39193H Brassica oleracea HOM05D001304 ORTHO05D007800 1.1e-82 310.5 259 66.0
CiPaw.05G174500 Carya illinoinensis HOM05D001304 ORTHO05D008890 5.6e-82 308.1 184 83.7
Migut.K00680 Erythranthe guttata HOM05D001304 ORTHO05D008890 5.6e-82 308.1 247 67.2
Aqoxy5G03572 Aquilegia oxysepala HOM05D001304 ORTHO05D008890 2.1e-81 306.2 232 69.8
AUR62024180 Chenopodium quinoa HOM05D001304 ORTHO05D008890 2.1e-81 306.2 232 68.1
Gohir.A04G137800 Gossypium hirsutum HOM05D001304 ORTHO05D008890 2.8e-81 305.8 238 70.6
PGSC0003DMG400017453 Solanum tuberosum HOM05D001304 ORTHO05D008890 3.6e-81 305.4 237 72.2
EL10As2g23248 Beta vulgaris HOM05D001304 ORTHO05D008890 6.2e-81 304.7 229 68.1
Solyc05g014310.3 Solanum lycopersicum HOM05D001304 ORTHO05D008890 2.3e-80 302.8 232 71.6
Rhsim12G0107100 Rhododendron simsii HOM05D001304 ORTHO05D008890 5.2e-80 301.6 230 70.9
Sopen05g009420 Solanum pennellii HOM05D001304 ORTHO05D008890 5.2e-80 301.6 222 73.9
Atru.chr11.2216 Acer truncatum HOM05D001304 ORTHO05D008890 8.9e-80 300.8 200 79.5
Thecc.02G270700 Theobroma cacao HOM05D001304 ORTHO05D008890 8.9e-80 300.8 239 69.0
Duzib251G0230 Durio zibethinus HOM05D001304 ORTHO05D008890 2.0e-79 299.7 239 69.0
unitig_8.g2912 Utricularia gibba HOM05D000468 ORTHO05D008890 2.6e-79 299.3 236 66.9
Gorai.012G174200 Gossypium raimondii HOM05D001304 ORTHO05D008890 7.5e-79 297.7 238 69.3
Peaxi162Scf00128g00729 Petunia axillaris HOM05D001304 ORTHO05D008890 1.7e-78 296.6 230 70.0
Ah.02g130500 Amaranthus hybridus HOM05D001304 ORTHO05D008890 6.4e-78 294.7 214 68.7
Sc04g0009800 Simmondsia chinensis HOM05D001304 ORTHO05D008890 6.4e-78 294.7 234 67.5
Lalb_Chr08g0230761 Lupinus albus HOM05D001304 ORTHO05D008890 1.4e-77 293.5 234 67.5
PSO063G7645 Papaver somniferum HOM05D001304 ORTHO05D008890 5.4e-77 291.6 234 65.4
Lj6g0017703 Lotus japonicus HOM05D001304 ORTHO05D008890 1.6e-76 290.0 235 66.4
PSO782G0777 Papaver somniferum HOM05D001304 ORTHO05D008890 1.6e-76 290.0 234 65.0
CDE02G1129 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 6.0e-76 288.1 228 66.2
Cpa.g.c30628.2 Carica papaya HOM05D001304 ORTHO05D008890 2.3e-75 286.2 228 67.1
Hund06057 Selenicereus undatus HOM05D001304 ORTHO05D008890 2.3e-75 286.2 233 63.9
Nitab4.5_0001318g0090 Nicotiana tabacum HOM05D001304 ORTHO05D008890 3.9e-75 285.4 230 70.9
ATR0824G252 Amborella trichopoda HOM05D001304 ORTHO05D008890 1.6e-73 280.0 181 76.2
Lj6C819T3 Lonicera japonica HOM05D001304 ORTHO05D008890 8.1e-73 277.7 240 65.0
CDE09G0600 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 3.1e-72 275.8 228 65.4
ECA233G5962 Erigeron canadensis HOM05D000468 ORTHO05D000548 3.5e-68 262.3 211 65.4
CDE04G1632 Ceratophyllum demersum HOM05D001304 ORTHO05D008890 6.0e-68 261.5 228 61.4
HanXRQChr08g0207321 Helianthus annuus HOM05D001304 ORTHO05D008890 7.8e-68 261.2 240 61.7
MELO3C010716.2 Cucumis melo HOM05D001304 ORTHO05D008890 6.6e-67 258.1 135 94.1
Actinidia24567 Actinidia chinensis HOM05D001304 ORTHO05D008890 1.5e-66 256.9 233 60.5
TPR.G33410 Trifolium pratense HOM05D001304 ORTHO05D008890 1.4e-64 250.4 225 59.6
HPP92_004594 Vanilla planifolia HOM05D001304 ORTHO05D008890 1.4e-64 250.4 167 75.4
Lsat_1_v5_gn_8_150960 Lactuca sativa HOM05D001304 ORTHO05D008890 3.1e-64 249.2 239 59.4
Medtr3g086040 Medicago truncatula HOM05D001304 ORTHO05D008890 2.2e-62 243.0 230 58.7
Hma1.2p1_0079F.1_g041530 Hydrangea macrophylla HOM05D001304 ORTHO05D008890 4.1e-61 238.8 231 59.3
Os02g0600200 Oryza sativa ssp. japonica HOM05D001304 ORTHO05D008890 7.1e-61 238.0 191 66.0
GSVIVG01010306001 Vitis vinifera HOM05D001304 ORTHO05D008890 3.5e-60 235.7 144 82.6
Zm00001eb246340 Zea mays HOM05D001304 ORTHO05D008890 1.0e-59 234.2 188 64.9
CSS0032412 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D008721 8.7e-59 231.1 142 81.0
vmacro16148 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 1.7e-54 216.9 139 77.7
TAR629G1650 Trochodendron aralioides HOM05D001304 ORTHO05D008890 6.4e-54 214.9 139 77.7
arahy.Tifrunner.gnm1.ann1.Q18UTF Arachis hypogaea HOM05D001304 ORTHO05D008890 4.3e-50 202.2 227 54.2
BolC6t38945H Brassica oleracea HOM05D001304 ORTHO05D008890 1.8e-48 196.8 125 81.6
Psat5g093920 Pisum sativum HOM05D001304 ORTHO05D008890 1.8e-43 180.3 95 87.4
AagrBONN_evm.TU.Sc2ySwM_368.469 Anthoceros agrestis HOM05D001304 ORTHO05D008890 6.7e-43 178.3 195 48.2
Duzib248G0877 Durio zibethinus HOM05D001304 ORTHO05D008890 8.7e-43 177.9 229 49.3
SEGI_40444 Sequoiadendron giganteum HOM05D001304 ORTHO05D008890 9.6e-42 174.5 191 49.2
Pp3c14_9580 Physcomitrium patens HOM05D001304 ORTHO05D008890 4.8e-41 172.2 190 46.3
Mapoly0101s0039 Marchantia polymorpha HOM05D001304 ORTHO05D008890 2.4e-40 169.9 183 47.0
Cfa021197 Carpinus fangiana HOM05D001304 ORTHO05D008890 1.3e-38 164.1 140 65.0
DCAR_026486 Daucus carota HOM05D000468 ORTHO05D008890 1.2e-36 157.5 140 58.6
CBR_g28672 Chara braunii HOM05D001304 ORTHO05D008890 1.1e-34 151.0 172 45.3
ClCG08G017440 Citrullus lanatus HOM05D001304 ORTHO05D008890 6.9e-32 141.7 89 80.9
MBI06_g05241_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D008890 1.4e-29 134.0 228 43.0
SMO367G0665 Selaginella moellendorffii HOM05D001304 ORTHO05D008890 2.5e-29 133.3 163 42.3
Oeu009356.1 Olea europaea HOM05D001304 ORTHO05D008890 6.1e-20 102.1 57 87.7
vmacro16147 Vaccinium macrocarpon HOM05D001304 ORTHO05D008890 1.3e-17 94.4 91 60.4
MCO01G115 Micromonas commoda HOM05D001304 ORTHO05D008890 1.6e-12 77.4 167 28.7
PRCOL_00000361 Prasinoderma coloniale HOM05D001304 ORTHO05D008890 2.7e-12 76.6 129 27.9
Ah.03g133980 Amaranthus hybridus HOM05D007778 ORTHO05D009819 3.7e-09 66.2 230 29.6
Cre03.g146167 Chlamydomonas reinhardtii HOM05D001304 ORTHO05D008890 1.2e-07 61.2 178 27.5


User provided reference genes

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