Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 0.0e+00 1080.5 554 100.0
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 6.0e-268 927.2 562 86.8
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 4.1e-232 808.1 594 73.7
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 6.0e-167 591.7 570 59.3
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 1.1e-72 278.5 600 34.5
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.5e-72 278.1 628 35.5
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 1.5e-69 268.1 608 35.4
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 5.8e-69 266.2 613 34.3
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 2.9e-68 263.8 660 33.3
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 2.9e-68 263.8 628 34.7
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.4e-67 261.5 634 34.1
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 1.4e-67 261.5 623 33.5
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 1.9e-67 261.2 613 35.6
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 2.4e-67 260.8 614 35.0
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 5.4e-67 259.6 623 34.0
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 1.3e-65 255.0 629 33.2
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 8.7e-65 252.3 629 34.0
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 5.6e-64 249.6 635 34.0
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 9.6e-64 248.8 525 35.6
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 6.2e-63 246.1 628 33.3
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 8.1e-63 245.7 646 33.6
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 8.1e-63 245.7 667 32.5
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 6.9e-62 242.7 620 32.6
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 3.4e-61 240.4 633 32.1
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 4.4e-61 240.0 651 32.9
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 5.8e-61 239.6 638 33.2
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 9.9e-61 238.8 599 33.2
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 4.9e-60 236.5 647 30.9
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 4.9e-60 236.5 628 33.4
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 4.9e-60 236.5 692 31.8
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 6.4e-60 236.1 625 33.4
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 1.1e-59 235.3 658 32.7
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 1.4e-59 235.0 631 32.5
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 2.4e-59 234.2 631 33.0
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.5e-58 230.3 642 33.0
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 1.3e-57 228.4 660 32.0
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.3e-57 227.6 646 32.2
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 5.1e-57 226.5 646 32.4
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 6.6e-57 226.1 645 31.3
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.1e-56 225.3 697 30.8
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 7.3e-56 222.6 617 33.4
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 2.1e-55 221.1 545 34.1
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 1.1e-54 218.8 607 31.3
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.8e-54 218.0 686 31.6
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 3.4e-53 213.8 627 31.9
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 4.5e-53 213.4 590 32.9
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 9.9e-53 212.2 663 29.1
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 2.2e-52 211.1 560 33.4
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 2.2e-52 211.1 615 31.9
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 2.2e-52 211.1 663 32.3
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 3.8e-52 210.3 637 30.1
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 6.4e-52 209.5 628 31.5
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 8.4e-52 209.1 607 31.6
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 2.4e-51 207.6 662 28.7
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 2.4e-51 207.6 703 29.3
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 2.4e-51 207.6 703 29.4
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 7.1e-51 206.1 539 33.2
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.1e-50 204.5 674 29.7
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 4.6e-50 203.4 602 31.7
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 1.0e-49 202.2 675 30.2
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 3.9e-49 200.3 651 29.0
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.9e-49 200.3 650 30.9
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 3.9e-49 200.3 614 28.7
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 5.1e-49 199.9 666 30.0
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 8.7e-49 199.1 620 31.3
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 7.4e-48 196.1 622 29.3
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 2.8e-47 194.1 683 29.6
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 4.8e-47 193.4 685 29.1
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 3.1e-46 190.7 728 28.4
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 1.2e-45 188.7 605 29.6
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 2.6e-45 187.6 680 29.0
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 1.3e-44 185.3 634 29.2
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 6.5e-44 183.0 584 27.6
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 8.4e-44 182.6 561 31.0
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 1.4e-43 181.8 602 29.7
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 1.4e-43 181.8 602 29.7
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 1.9e-43 181.4 600 29.3
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 1.9e-43 181.4 600 29.3
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 2.5e-43 181.0 596 29.5
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 3.2e-43 180.6 489 33.1
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 3.2e-43 180.6 765 27.7
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 2.1e-42 177.9 507 33.9
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 2.7e-42 177.6 720 28.5
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 2.7e-42 177.6 719 26.7
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 4.6e-42 176.8 662 28.2
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 6.0e-42 176.4 729 25.9
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 1.0e-41 175.6 597 28.3
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 1.3e-41 175.3 594 29.1
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 2.3e-41 174.5 629 29.1
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 5.1e-41 173.3 558 29.6
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 1.1e-40 172.2 603 28.5
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.9e-40 171.4 649 29.6
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 2.5e-40 171.0 600 28.3
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 3.3e-40 170.6 582 29.9
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 4.3e-40 170.2 559 29.9
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 7.4e-40 169.5 606 28.2
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 2.1e-39 167.9 688 27.6
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 1.8e-38 164.9 642 27.6
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 1.2e-37 162.2 566 28.3
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 2.0e-37 161.4 494 29.6
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 5.8e-37 159.8 607 27.2
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 1.0e-36 159.1 597 26.8
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 1.0e-36 159.1 550 28.5
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 1.3e-36 158.7 534 29.0
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 3.8e-36 157.1 607 27.8
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 7.2e-35 152.9 619 27.9
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 1.8e-33 148.3 605 26.8
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 2.3e-33 147.9 379 32.2
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 7.4e-32 142.9 520 28.1
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 7.4e-32 142.9 339 35.1
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 4.8e-31 140.2 617 28.7
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 9.0e-30 136.0 830 23.3
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 1.5e-29 135.2 590 28.8
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 5.9e-29 133.3 788 24.1
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 3.6e-26 124.0 698 23.8
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 6.1e-26 123.2 329 34.0
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 1.4e-25 122.1 705 24.5
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 3.0e-25 120.9 258 33.3
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 4.3e-24 117.1 586 26.1
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 4.3e-24 117.1 810 22.2
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.3e-23 115.5 178 43.8
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 3.7e-23 114.0 197 35.0
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 4.1e-22 110.5 806 21.8
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 8.5e-20 102.8 643 22.4
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.9e-19 101.7 492 27.6
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 4.2e-19 100.5 147 40.8
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 4.2e-19 100.5 233 35.2
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 5.5e-19 100.1 368 28.3
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 1.2e-18 99.0 354 32.5
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.6e-18 98.6 147 42.2
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 3.6e-18 97.4 407 27.3
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 3.0e-17 94.4 160 41.9
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 1.1e-16 92.4 308 32.1
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 2.6e-16 91.3 178 38.8
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 5.7e-16 90.1 82 50.0
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 5.7e-16 90.1 441 27.9
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.3e-15 89.0 85 56.5
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 2.8e-15 87.8 264 33.7
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 3.7e-15 87.4 210 32.9
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 3.7e-15 87.4 281 33.8
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 8.2e-15 86.3 265 33.2
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 1.1e-14 85.9 283 31.8
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 2.4e-14 84.7 287 31.0
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 1.5e-13 82.0 278 30.6
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 1.5e-13 82.0 264 31.1
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 1.7e-12 78.6 99 39.4
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.8e-12 77.4 286 27.6
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.2e-11 74.3 63 60.3
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.2e-10 72.4 95 42.1
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 2.1e-10 71.6 88 40.9
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 8.0e-10 69.7 82 41.5
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.0e-09 69.3 172 32.0
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.0e-09 69.3 172 32.0
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 5.7e-08 63.5 57 52.6
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 5.7e-08 63.5 84 39.3
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 3.7e-07 60.8 448 24.3


User provided reference genes

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